UFGI Publication Round-Up: Week of 8/26/24

Bringing the Genomic Revolution to Comparative Oncology: Human and Dog Cancers.

Cahill JA, Smith LA, Gottipati S, Torabi TS, Graim K.

Annu Rev Biomed Data Sci. 2024 Aug;7(1):107-129. doi: 10.1146/annurev-biodatasci-102423-111936. Epub 2024 Jul 24.

PMID: 38648188

Severe trauma leads to sustained muscle loss, induced frailty, and distinct temporal changes in myokine and chemokine profiles of older patients.

Polcz VE, Barrios EL, Cox MC, Rocha I, Liang M, Hawkins RB, Darden D, Ungaro R, Dirain M, Mankowski R, Mohr AM, Moore FA, Moldawer LL, Efron PA, Brakenridge SC, Loftus TJ.

Surgery. 2024 Aug 22:S0039-6060(24)00550-6. doi: 10.1016/j.surg.2024.07.031. Online ahead of print.

PMID: 39179433

Community-engaged artificial intelligence research: A scoping review.

Loftus TJ, Balch JA, Abbott KL, Hu D, Ruppert MM, Shickel B, Ozrazgat-Baslanti T, Efron PA, Tighe PJ, Hogan WR, Rashidi P, Cardel MI, Upchurch GR Jr, Bihorac A.

PLOS Digit Health. 2024 Aug 23;3(8):e0000561. doi: 10.1371/journal.pdig.0000561. eCollection 2024 Aug.

PMID: 39178307

Multimodal Nuclear Factor-Erythroid-2-Related Factor (NRF2) Therapy in the Context of Mammalian Target of Rapamycin (mTOR) Inhibition Reprograms the Acute Systemic and Pulmonary Immune Response after Combined Burn and Inhalation Injury.

Alves MD, Clark RA, Hernandez DA, Bucci MP, Chen D, Efron PA, Wallet SM, Keselowsky BG, Maile R.

Shock. 2024 Aug 21. doi: 10.1097/SHK.0000000000002466. Online ahead of print.

PMID: 39178221

Postinjury Pneumonia Induces a Unique Blood Microbiome Signature.

Munley JA, Kelly LS, Park G, Pons EE, Kannan KB, Bible LE, Efron PA, Nagpal R, Mohr AM.

Shock. 2024 Aug 8. doi: 10.1097/SHK.0000000000002428. Online ahead of print.

PMID: 39178199

MerTK-dependent efferocytosis by monocytic-MDSCs mediates resolution of post-lung transplant ischemia-reperfusion injury.

Leroy V, Manual Kollareth DJ, Tu Z, Valisno JAC, Woolet-Stockton M, Saha BK, Emtiazjoo AM, Rackauskas M, Moldawer LL, Efron PA, Cai G, Atkinson C, Upchurch GR Jr, Sharma AK.

JCI Insight. 2024 Aug 22:e179876. doi: 10.1172/jci.insight.179876. Online ahead of print.

PMID: 39172530

Proteomic Profiling of Hindlimb Skeletal Muscle Disuse in a Murine Model of Sepsis.

Boeno FP, Roesch LFW, Efron PA, Laitano O.

Crit Care Explor. 2024 Aug 20;6(8):e1144. doi: 10.1097/CCE.0000000000001144. eCollection 2024 Aug 1.

PMID: 39162648

Structures of LIG1 uncover the mechanism of sugar discrimination against 5′-RNA-DNA junctions during ribonucleotide excision repair.

Balu KE, Tang Q, Almohdar D, Ratcliffe J, Kalaycioğlu M, Çağlayan M.

J Biol Chem. 2024 Aug 17:107688. doi: 10.1016/j.jbc.2024.107688. Online ahead of print.

PMID: 39159820

FAM210A: An emerging regulator of mitochondrial homeostasis.

Wang Y, Yue F.

Bioessays. 2024 Aug 19:e2400090. doi: 10.1002/bies.202400090. Online ahead of print.

PMID: 39159484

The clockwork of champions: Influence of circadian biology on exercise performance.

Hesketh SJ, Esser KA.

Free Radic Biol Med. 2024 Aug 19;224:78-87. doi: 10.1016/j.freeradbiomed.2024.08.020. Online ahead of print.

PMID: 39168419

Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer.

Yin R, Zhao H, Li L, Yang Q, Zeng M, Yang C, Bian J, Xie M.

Comput Struct Biotechnol J. 2024 Jul 18;23:3020-3029. doi: 10.1016/j.csbj.2024.07.014. eCollection 2024 Dec.

PMID: 39171252

Clopidogrel-Mediated P2Y₁₂ Inhibition According to Renal Function in Patients With Diabetes Mellitus and CAD.

Ortega-Paz L, Franchi F, Rollini F, Galli M, Been L, Ghanem G, Shalhoub A, Ossi T, Rivas A, Zhou X, Pineda AM, Suryadevara S, Soffer D, Zenni MM, Mahowald MK, Langaee T, Jakubowski JA, Cavallari LH, Angiolillo DJ.

JACC Basic Transl Sci. 2024 Mar 25;9(7):865-876. doi: 10.1016/j.jacbts.2024.03.003. eCollection 2024 Jul.

PMID: 39170956

Meta-analysis of genome-wide association studies of stable warfarin dose in patients of African ancestry.

Asiimwe IG, Blockman M, Cavallari LH, Cohen K, Cupido CS, Dandara C, Davis BH, Jacobson B, Johnson JA, Lamorde M, Limdi NA, Morgan J, Mouton JP, Muyambo S, Nakagaayi D, Ndadza A, Okello E, Perera MA, Schapkaitz E, Sekaggya-Wiltshire C, Semakula JR, Tatz G, Waitt C, Yang G, Zhang EJ, Jorgensen AL, Pirmohamed M.

Blood Adv. 2024 Aug 20:bloodadvances.2024014227. doi: 10.1182/bloodadvances.2024014227. Online ahead of print.

PMID: 39163621

Leveraging QSP Models for MIPD: A Case Study for Warfarin/INR.

Falkenhagen U, Cavallari LH, Duarte JD, Kloft C, Schmidt S, Huisinga W.

Clin Pharmacol Ther. 2024 Sep;116(3):795-806. doi: 10.1002/cpt.3274. Epub 2024 Apr 24.

PMID: 38655898

Get to know your neighbors with a SNAQ^™: A framework for single cell spatial neighborhood analysis in immunohistochemical images.

Silver A, Chakraborty A, Pittu A, Feier D, Anica M, West I, Sarkisian MR, Deleyrolle LP.

bioRxiv [Preprint]. 2024 Aug 7:2024.08.04.606539. doi: 10.1101/2024.08.04.606539.

PMID: 39149345

The neuropathology of Self-Injurious Behavior: Studies using animal models.

Devine DP.

Brain Res. 2024 Aug 18:149172. doi: 10.1016/j.brainres.2024.149172. Online ahead of print.

PMID: 39163896

Implementing a pragmatic clinical trial to tailor opioids for chronic pain on behalf of the IGNITE ADOPT PGx investigators.

Skaar TC, Myers RA, Fillingim RB, Callaghan JT, Cicali E, Eadon MT, Elwood EN, Ginsburg GS, Lynch S, Nguyen KA, Obeng AO, Park H, Pratt VM, Rosenman M, Sadeghpour A, Shuman S, Singh R, Tillman EM, Volpi S, Wiisanen K, Winterstein AG, Horowitz CR, Voora D, Orlando L, Chakraborty H, Van Driest S, Peterson JF, Cavallari LA, Johnson JA, Dexter PR; IGNITE Pragmatic Trials Network.

Clin Transl Sci. 2024 Aug;17(8):e70005. doi: 10.1111/cts.70005.

PMID: 39177194

All tangled up: Unraveling phylogenetics and reticulate evolution in the vining ferns, Lygodium (Schizaeales).

Pelosi JA, Zumwalde BA, Testo WL, Kim EH, Burleigh JG, Sessa EB.

Am J Bot. 2024 Aug 20:e16389. doi: 10.1002/ajb2.16389. Online ahead of print.

PMID: 39162392

Phylogenetic evidence clarifies the history of the extrusion of Indochina.

Li XQ, Peng HW, Xiang KL, Xiang XG, Jabbour F, Ortiz RDC, Soltis PS, Soltis DE, Wang W.

Proc Natl Acad Sci U S A. 2024 Aug 27;121(35):e2322527121. doi: 10.1073/pnas.2322527121. Epub 2024 Aug 19.

PMID: 39159371

Prediction of A. Baumannii Amikacin Resistance in Clinical Metagenomics.

Sy MA, Prosperi M, Serajian M, Boucher C, Benos PT, Marini S.

Stud Health Technol Inform. 2024 Aug 22;316:212-213. doi: 10.3233/SHTI240381.

PMID: 39176710

Polystyrene nanoplastics alter intestinal toxicity of 2,4-DTBP in a sex-dependent manner in zebrafish (Danio rerio).

Liu R, Gao H, Liang X, Zhang J, Meng Q, Wang Y, Guo W, Martyniuk CJ, Zha J.

J Hazard Mater. 2024 Aug 22;478:135585. doi: 10.1016/j.jhazmat.2024.135585. Online ahead of print.

PMID: 39178772

Transcriptome networks and physiology related to cardiac function and motor activity are perturbed in larval zebrafish (Danio rerio) following exposure to the antidepressant citalopram.

Kazi KJ, English CD, Ivantsova E, Souders Ii CL, Martyniuk CJ.

Environ Pollut. 2024 Aug 19:124767. doi: 10.1016/j.envpol.2024.124767. Online ahead of print.

PMID: 39168440

Digital video analysis reveals gait parameters that predict performance in the jumping test phase of three-day eventing.

Johns LT, Smythe MP, Dewberry S, Staiger EA, Allen K, Brooks SA.

J Equine Vet Sci. 2024 Aug 17:105166. doi: 10.1016/j.jevs.2024.105166. Online ahead of print.

PMID: 39159896

Monocyte NLRP3 inflammasome and interleukin-1β activation modulated by alpha-1 antitrypsin therapy in deficient individuals.

Gogoi D, Yu H, Casey M, Baird R, Yusuf A, Forde L, O’ Brien ME, West JR, Flagg T, McElvaney NG, Eden E, Mueller C, Brantly ML, Geraghty P, Reeves EP.

Thorax. 2024 Aug 19;79(9):822-833. doi: 10.1136/thorax-2023-221071.

PMID: 38418195