UFGI Publication Round-Up: Week of 9/2/24

Baker RL, Brock GL, Newsome EL, Zhao M.

Appl Plant Sci. 2024 Jul 16;12(4):e11605. doi: 10.1002/aps3.11605. eCollection 2024 Jul-Aug.

PMID: 39184197

Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning model.

Ma X, Thela SR, Zhao F, Yao B, Wen Z, Jin P, Zhao J, Chen L.

Bioinformatics. 2024 Aug 28:btae528. doi: 10.1093/bioinformatics/btae528. Online ahead of print.

PMID: 39196755

Genome-Wide Methylation Profiling of Peripheral T-Cell Lymphomas Identifies TRIP13 as a Critical Driver of Tumor Proliferation and Survival.

Nowialis P, Tobon J, Lopusna K, Opavska J, Badar A, Chen D, Abdelghany R, Pozas G, Fingeret J, Noel E, Riva A, Fujiwara H, Ishov A, Opavsky R.

Epigenomes. 2024 Aug 21;8(3):32. doi: 10.3390/epigenomes8030032.

PMID: 39189258

Novel insights on unraveling dynamics of transmission clusters in outbreaks using phylogeny-based methods.

Magalis BR, Riva A, Marini S, Salemi M, Prosperi M.

Infect Genet Evol. 2024 Aug 24:105661. doi: 10.1016/j.meegid.2024.105661. Online ahead of print.

PMID: 39186995

Day-night gene expression reveals circadian gene disco as a candidate for diel-niche evolution in moths.

Sondhi Y, Messcher RL, Bellantuono AJ, Storer CG, Cinel SD, Godfrey RK, Mongue AJ, Weng YM, Glass D, St Laurent RA, Hamilton CA, Earl C, Brislawn CJ, Kitching IJ, Bybee SM, Theobald JC, Kawahara AY.

Proc Biol Sci. 2024 Aug;291(2029):20240591. doi: 10.1098/rspb.2024.0591. Epub 2024 Aug 28.

PMID: 39194299

Elemental and isotopic analysis of leaves predicts nitrogen-fixing phenotypes.

Doby JR, Siniscalchi CM, Pajuelo M, Krigbaum J, Soltis DE, Guralnick RP, Folk RA.

Sci Rep. 2024 Aug 29;14(1):20065. doi: 10.1038/s41598-024-70412-8.

PMID: 39209870

A molecular phylogeny of the Petaluridae (Odonata: Anisoptera): A 160-Million-Year-Old story of drift and extinction.

Tolman ER, Beatty CD, Kohli MK, Abbott J, Bybee SM, Frandsen PB, Stephen Gosnell J, Guralnick R, Kalkman VJ, Newton LG, Suvorov A, Ware JL.

Mol Phylogenet Evol. 2024 Aug 27:108185. doi: 10.1016/j.ympev.2024.108185. Online ahead of print.

PMID: 39209047

Dual-RNA-sequencing to elucidate the interactions between sorghum and Colletotrichum sublineola.

Vela S, Wolf ESA, Rollins JA, Cuevas HE, Vermerris W.

Front Fungal Biol. 2024 Aug 16;5:1437344. doi: 10.3389/ffunb.2024.1437344. eCollection 2024.

PMID: 39220294

Genotype-Guided De-Escalation of DAPT: Switching to Real-World Practice.

Cavallari LH, Franchi F.

JACC Cardiovasc Interv. 2024 Aug 5:S1936-8798(24)00978-6. doi: 10.1016/j.jcin.2024.07.014. Online ahead of print.

PMID: 39217532

nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity.

Gaynor ML, Landis JB, O’Connor TK, Laport RG, Doyle JJ, Soltis DE, Ponciano JM, Soltis PS.

Appl Plant Sci. 2024 Jul 14;12(4):e11606. doi: 10.1002/aps3.11606. eCollection 2024 Jul-Aug.

PMID: 39184199

Characterization of commercially available murine fibrosarcoma NCTC-2472 cells both in vitro and as a model of bone cancer pain in vivo.

Ortiz YT, Shamir LG, McMahon LR, Wilkerson JL.

PLoS One. 2024 Aug 29;19(8):e0309398. doi: 10.1371/journal.pone.0309398. eCollection 2024.

PMID: 39208033

Angiotensin II Alters Mitochondrial Membrane Potential and Lipid Metabolism in Rat Colonic Epithelial Cells.

Toth DD, Souder CL 2nd, Patuel S, English CD, Konig I, Ivantsova E, Malphurs W, Watkins J, Anne Costa K, Bowden JA, Zubcevic J, Martyniuk CJ.

Biomolecules. 2024 Aug 9;14(8):974. doi: 10.3390/biom14080974.

PMID: 39199363