UFGI Publication Round-up: Week of 2/13/23

Nicholas Muzyczka, PhD.

Berns KI, Byrne BJ, Flotte TR, Samulski RJ, Srivastava A.

Mol Ther. 2023 Feb 9:S1525-0016(23)00059-X. doi: 10.1016/j.ymthe.2023.01.027. Online ahead of print.

PMID: 36764298

Challenges and opportunities for using natural history collections to estimate insect population trends.

Davis CL, Guralnick RP, Zipkin EF.

J Anim Ecol. 2023 Feb;92(2):237-249. doi: 10.1111/1365-2656.13763. Epub 2022 Jun 27.

PMID: 35716080

Structure and Functional Properties of Bacterial Communities in Surface Sediments of the Recently Declared Nutrient-Saturated Lake Villarrica in Southern Chile.

Campos MA, Zhang Q, Acuña JJ, Rilling JI, Ruiz T, Carrazana E, Reyno C, Hollenback A, Gray K, Jaisi DP, Ogram A, Bai J, Zhang L, Xiao R, Elias M, Sadowsky MJ, Hu J, Jorquera MA.

Microb Ecol. 2023 Feb 8. doi: 10.1007/s00248-023-02173-2. Online ahead of print.

PMID: 36752910

Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of Serianthes and its relationship with Falcataria and Wallaceodendron in the wider ingoid clade (Leguminosae, Caesalpinioideae).

Demeulenaere E, Schils T, Burleigh JG, Ringelberg JJ, Koenen EJM, Ickert-Bond SM.

PhytoKeys. 2022 Aug 22;205:335-361. doi: 10.3897/phytokeys.205.79144. eCollection 2022.

PMID: 36762011

Towards a global perspective for Salvia L.: Phylogeny, diversification and floral evolution.

Moein F, Jamzad Z, Rahiminejad M, Landis JB, Mirtadzadini M, Soltis DE, Soltis PS.

J Evol Biol. 2023 Feb 9. doi: 10.1111/jeb.14149. Online ahead of print.

PMID: 36759951

Review of the current and potential use of biological and molecular methods for the estimation of the postmortem interval in animals and humans.

Wenzlow N, Mills D, Byrd J, Warren M, Long MT.

J Vet Diagn Invest. 2023 Feb 6:10406387231153930. doi: 10.1177/10406387231153930. Online ahead of print.

PMID: 36744749

Machine-learning methods applied to integrated transcriptomic data from bovine blastocysts and elongating conceptuses to identify genes predictive of embryonic competence.

Rabaglino MB, Salilew-Wondim D, Zolini A, Tesfaye D, Hoelker M, Lonergan P, Hansen PJ.

FASEB J. 2023 Mar;37(3):e22809. doi: 10.1096/fj.202201977R.

PMID: 36753406

Virology under the Microscope-a Call for Rational Discourse.

Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O’Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A.

mSphere. 2023 Jan 26:e0003423. doi: 10.1128/msphere.00034-23. Online ahead of print.

PMID: 36700653

Virology under the Microscope-a Call for Rational Discourse.

Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O’Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A.

mBio. 2023 Jan 26:e0018823. doi: 10.1128/mbio.00188-23. Online ahead of print.

PMID: 36700642

Virology under the Microscope-a Call for Rational Discourse.

Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O’Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A.

J Virol. 2023 Jan 26:e0008923. doi: 10.1128/jvi.00089-23. Online ahead of print.

PMID: 36700640

Binocular benefit following monocular subretinal AAV injection in a mouse model of autosomal dominant retinitis pigmentosa (adRP).

Ahmed CM, Massengill MT, Ildefonso CJ, Jalligampala A, Zhu P, Li H, Patel AP, McCall MA, Lewin AS.

Vision Res. 2023 Feb 9;206:108189. doi: 10.1016/j.visres.2023.108189. Online ahead of print.

PMID: 36773475

Piperlongumine conjugates induce targeted protein degradation.

Pei J, Xiao Y, Liu X, Hu W, Sobh A, Yuan Y, Zhou S, Hua N, Mackintosh SG, Zhang X, Basso KB, Kamat M, Yang Q, Licht JD, Zheng G, Zhou D, Lv D.

Cell Chem Biol. 2023 Feb 1:S2451-9456(23)00027-2. doi: 10.1016/j.chembiol.2023.01.004. Online ahead of print.

PMID: 36750097

The Study of Muscle, Mobility and Aging (SOMMA). A Unique Cohort Study about the Cellular Biology of Aging and Age-related Loss of Mobility.

Cummings SR, Newman AB, Coen PM, Hepple RT, Collins R, Kennedy K, Danielson M, Peters K, Blackwell T, Johnson E, Mau T, Shankland EG, Lui LY, Patel S, Young D, Glynn NW, Strotmeyer ES, Esser KA, Marcinek DJ, Goodpaster BH, Kritchevsky S, Cawthon PM.

J Gerontol A Biol Sci Med Sci. 2023 Feb 9:glad052. doi: 10.1093/gerona/glad052. Online ahead of print.

PMID: 36754371

Multi-task deep autoencoder to predict Alzheimer’s disease progression using temporal DNA methylation data in peripheral blood.

Chen L, Saykin AJ, Yao B, Zhao F; Alzheimer’s Disease Neuroimaging Initiative (ADNI).

Comput Struct Biotechnol J. 2022 Oct 23;20:5761-5774. doi: 10.1016/j.csbj.2022.10.016. eCollection 2022.

PMID: 36756173

Effects of Trauma Plasma-Derived Exosomes on Hematopoietic Progenitor Cells.

Munley JA, Kelly LS, Gillies GS, Kannan KB, Pons EE, Bible LE, Efron PA, Mohr AM.

Shock. 2023 Feb 13. doi: 10.1097/SHK.0000000000002094. Online ahead of print.

PMID: 36772985

Surgical resident experience with common bile duct exploration and assessment of performance and autonomy with formative feedback.

Nyren MQ, Filiberto AC, Underwood PW, Abbott KL, Balch JA, Mas FD, Cobianchi L, Efron PA, George BC, Shickel B, Upchurch GR Jr, Sarosi GA Jr, Loftus TJ.

World J Emerg Surg. 2023 Feb 6;18(1):13. doi: 10.1186/s13017-023-00480-0.

PMID: 36747289

Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics.

Li Y, Zhu W, Xiang Q, Kim J, Dufresne C, Liu Y, Li T, Chen S.

Int J Mol Sci. 2023 Jan 23;24(3):2249. doi: 10.3390/ijms24032249.

PMID: 36768571

Branched mannan and xyloglucan as a dynamic duo in plant cell walls.

Grieß-Osowski A, Voiniciuc C.

Cell Surf. 2023 Jan 25;9:100098. doi: 10.1016/j.tcsw.2023.100098. eCollection 2023 Dec.

PMID: 36756196