UFGI Publication Round-up: Week of 2/6/23

Shan S, Yang B, Hauser BA, Soltis PS, Soltis DE.

Methods Mol Biol. 2023;2545:475-490. doi: 10.1007/978-1-0716-2561-3_25.

PMID: 36720829

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.

Marini S, Mavian C, Riva A, Prosperi M, Salemi M, Rife Magalis B.

Bioinformatics. 2022 Jan 12;38(3):856-860. doi: 10.1093/bioinformatics/btab725.

PMID: 34672334

Lung Inflammation in alpha-1-antitrypsin deficient individuals with normal lung function.

Kokturk N, Khodayari N, Lascano J, Riley EL, Brantly ML.

Respir Res. 2023 Feb 2;24(1):40. doi: 10.1186/s12931-023-02343-3.

PMID: 36732772

HSV-1 LAT Promoter Deletion Viruses Exhibit Strain-Specific and LAT-Dependent Epigenetic Regulation of Latent Viral Genomes in Human Neurons.

Grams TR, Edwards TG, Bloom DC.

J Virol. 2023 Feb 1:e0193522. doi: 10.1128/jvi.01935-22. Online ahead of print.

PMID: 36722973

Truncated ring-A amaryllidaceae alkaloid modulates the host cell integrated stress response, exhibiting antiviral activity to HSV-1 and SARSCoV-2.

McNulty J, Babu-Dokuburra C, Scattolon J, Zepeda-Velazquez C, Wesesky MA, Caldwell JK, Zheng W, Milosevic J, Kinchington PR, Bloom DC, Nimgaonkar VL, D’Aiuto L.

Sci Rep. 2023 Jan 30;13(1):1639. doi: 10.1038/s41598-023-28691-0.

PMID: 36717567

Independent innexin radiation shaped signaling in ctenophores.

Ortiz J, Bobkov YV, DeBiasse MB, Mitchell DG, Edgar A, Martindale MQ, Moss AG, Babonis LS, Ryan JF.

Mol Biol Evol. 2023 Feb 6:msad025. doi: 10.1093/molbev/msad025. Online ahead of print.

PMID: 36740225

Exploring perceptions, knowledge, and attitudes regarding pharmacogenetic testing in the medically underserved.

Gawronski BE, Cicali EJ, McDonough CW, Cottler LB, Duarte JD.

Front Genet. 2023 Jan 13;13:1085994. doi: 10.3389/fgene.2022.1085994. eCollection 2022.

PMID: 36712853

CGM Metrics Identify Dysglycemic States in Participants From the TrialNet Pathway to Prevention Study.

Wilson DM, Pietropaolo SL, Acevedo-Calado M, Huang S, Anyaiwe D, Scheinker D, Steck AK, Vasudevan MM, McKay SV, Sherr JL, Herold KC, Dunne JL, Greenbaum CJ, Lord SM, Haller MJ, Schatz DA, Atkinson MA, Nelson PW, Pietropaolo M; Type 1 Diabetes TrialNet Study Group.

Diabetes Care. 2023 Feb 2:dc221297. doi: 10.2337/dc22-1297. Online ahead of print.

PMID: 36730530

Testing bird-driven diurnal trade-offs of the moon moth’s anti-bat tail.

Rubin JJ, Martin NW, Sieving KE, Kawahara AY.

Biol Lett. 2023 Feb;19(2):20220428. doi: 10.1098/rsbl.2022.0428. Epub 2023 Feb 1.

PMID: 36722145

Protocol for a pilot and feasibility randomized-controlled trial of four weeks of oral γ-aminobutyric acid (GABA) intake and its effect on pain and sleep in middle-to-older aged adults.

Montesino-Goicolea S, Nin O, Gonzalez BM, Sawczuk NJ, Nodarse CL, Valdes-Hernandez PA, Jackson E, Huo Z, Somerville JET, Porges EC, Smith C, Fillingim RB, Cruz-Almeida Y.

Contemp Clin Trials Commun. 2023 Jan 20;32:101066. doi: 10.1016/j.conctc.2023.101066. eCollection 2023 Apr.

PMID: 36712186

Fat enough for the winter? Does nutritional status affect diapause?

Short CA, Hahn DA.

J Insect Physiol. 2023 Jan 27;145:104488. doi: 10.1016/j.jinsphys.2023.104488. Online ahead of print.

PMID: 36717056

Physician scheduling problem in Mobile Cabin Hospitals of China during Covid-19 outbreak.

Lan S, Fan W, Yang S, Pardalos PM.

Ann Math Artif Intell. 2023 Jan 27:1-24. doi: 10.1007/s10472-023-09834-5. Online ahead of print.

PMID: 36721866

Pyridoxal 5′-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes.

Denise R, Babor J, Gerlt JA, de Crécy-Lagard V.

Microb Genom. 2023 Feb;9(2). doi: 10.1099/mgen.0.000926.

PMID: 36729913

Hemocompatibility of all-trans retinoic acid-loaded citrate polymer coatings for vascular stents.

Ursino H, Zhang B, Ludtka C, Webb A, Allen JB.

Regen Eng Transl Med. 2022 Dec;8(4):579-592. doi: 10.1007/s40883-022-00257-y. Epub 2022 May 2.

PMID: 36714809

Variables Influencing the Differential Host Response to Burns in Pediatric and Adult Patients.

Barrios EL, Polcz VE, Moldawer LL, Rincon JC, Efron PA, Larson SD.

Shock. 2022 Nov 3. doi: 10.1097/SHK.0000000000002042. Online ahead of print.

PMID: 36730790

Retrospective Value Assessment of a Dedicated, Trauma Hybrid Operating Room.

Balch JA, Loftus TJ, Ruppert MM, Rosenthal MD, Mohr AM, Efron PA, Upchurch GR Jr, Smith RS.

J Trauma Acute Care Surg. 2023 Jan 23. doi: 10.1097/TA.0000000000003873. Online ahead of print.

PMID: 36727772

Early Wnt Signaling Activation Promotes Inner Ear Differentiation via Cell Caudalization in Mouse Stem Cell-Derived Organoids.

Tang PC, Chen L, Singh S, Groves AK, Koehler KR, Liu XZ, Nelson RF.

Stem Cells. 2023 Jan 30;41(1):26-38. doi: 10.1093/stmcls/sxac071.

PMID: 36153788

Metabolism and exercise: the skeletal muscle clock takes centre stage.

Martin RA, Viggars MR, Esser KA.

Nat Rev Endocrinol. 2023 Feb 1. doi: 10.1038/s41574-023-00805-8. Online ahead of print.

PMID: 36726017