UFGI Publication round-up week 5/6- 5/13

Recommendations for Clinical CYP2C9 Genotyping Allele Selection: A Joint Recommendation of the Association for Molecular Pathology and College of American Pathologists.

Pratt VM, Cavallari LH, Del Tredici AL, Hachad H, Ji Y, Moyer AM, Scott SA, Whirl-Carrillo M, Weck KE.

J Mol Diagn. 2019 May 7. pii: S1525-1578(18)30594-4. doi: 10.1016/j.jmoldx.2019.04.003. [Epub ahead of print] Review.

PMID: 31075510

Evidence for hormonal control of heart regenerative capacity during endothermy acquisition.

Hirose K, Payumo AY, Cutie S, Hoang A, Zhang H, Guyot R, Lunn D, Bigley RB, Yu H, Wang J, Smith M, Gillett E, Muroy SE, Schmid T, Wilson E, Field KA, Reeder DM, Maden M, Yartsev MM, Wolfgang MJ, Grützner F, Scanlan TS, Szweda LI, Buffenstein R, Hu G, Flamant F, Olgin JE, Huang GN.

Science. 2019 Apr 12;364(6436):184-188. doi: 10.1126/science.aar2038. Epub 2019 Mar 7.

PMID: 30846611

PMP22 regulates cholesterol trafficking and ABCA1-mediated cholesterol efflux.

Zhou Y, Miles JR, Tavori H, Lin M, Khoshbouei H, Borchelt D, Bazick H, Landreth GE, Lee S, Fazio S, Notterpek L.

J Neurosci. 2019 May 6. pii: 2942-18. doi: 10.1523/JNEUROSCI.2942-18.2019. [Epub ahead of print]

PMID: 31061090

HSP90 Inhibitor, NVP-AUY922, Improves Myelination in Vitro and Supports the Maintenance of Myelinated Axons in Neuropathic Mice.

Chittoor-Vinod VG, Bazick H, Todd AG, Falk D, Morelli KH, Burgess RW, Foster TC, Notterpek L.

ACS Chem Neurosci. 2019 May 3. doi: 10.1021/acschemneuro.9b00105. [Epub ahead of print]

PMID: 31017387

Transport and retention of perfluorooctanoic acid (PFOA) in natural soils: Importance of soil organic matter and mineral contents, and solution ionic strength.

Lyu X, Liu X, Sun Y, Ji R, Gao B, Wu J.

J Contam Hydrol. 2019 Apr 1;225:103477. doi: 10.1016/j.jconhyd.2019.03.009. [Epub ahead of print]

PMID: 31077878

Use of Plasmid pVMG to Make Transcriptional ß-Glucuronidase Reporter Gene Fusions in the Rhizobium Genome for Monitoring the Expression of Rhizobial Genes In Vivo.

Gao M, Benge A, Wu TJ, Javier R.

Biol Proced Online. 2019 May 3;21:8. doi: 10.1186/s12575-019-0096-y. eCollection 2019.

PMID: 31073281

Intracellular MLCK1 diversion reverses barrier loss to restore mucosal homeostasis.

Graham WV, He W, Marchiando AM, Zha J, Singh G, Li HS, Biswas A, Ong MLDM, Jiang ZH, Choi W, Zuccola H, Wang Y, Griffith J, Wu J, Rosenberg HJ, Wang Y, Snapper SB, Ostrov D, Meredith SC, Miller LW, Turner JR.

Nat Med. 2019 Apr;25(4):690-700. doi: 10.1038/s41591-019-0393-7. Epub 2019 Apr 1.

PMID: 30936544

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land.

Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, Tyerman S, Nevo E, Wu F, Zhang G, Wong GK, Leebens-Mack JH, Melkonian M, Blatt MR, Soltis PS, Soltis DE, Pogson BJ, Chen ZH.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5015-5020. doi: 10.1073/pnas.1812092116. Epub 2019 Feb 25.

PMID: 30804180

CRISPR/Cas9 mediated knockout of the abdominal-A homeotic gene in fall armyworm moth (Spodoptera frugiperda).

Wu K, Shirk PD, Taylor CE, Furlong RB, Shirk BD, Pinheiro DH, Siegfried BD.

PLoS One. 2018 Dec 6;13(12):e0208647. doi: 10.1371/journal.pone.0208647. eCollection 2018.

PMID: 30521608

Change in dominance determines herbivore effects on plant biodiversity.

Koerner SE, Smith MD, Burkepile DE, Hanan NP, Avolio ML, Collins SL, Knapp AK, Lemoine NP, Forrestel EJ, Eby S, Thompson DI, Aguado-Santacruz GA, Anderson JP, Anderson TM, Angassa A, Bagchi S, Bakker ES, Bastin G, Baur LE, Beard KH, Beever EA, Bohlen PJ, Boughton EH, Canestro D, Cesa A, Chaneton E, Cheng J, D’Antonio CM, Deleglise C, Dembélé F, Dorrough J, Eldridge DJ, Fernandez-Going B, Fernández-Lugo S, Fraser LH, Freedman B, García-Salgado G, Goheen JR, Guo L, Husheer S, Karembé M, Knops JMH, Kraaij T, Kulmatiski A, Kytöviita MM, Lezama F, Loucougaray G, Loydi A, Milchunas DG, Milton SJ, Morgan JW, Moxham C, Nehring KC, Olff H, Palmer TM, Rebollo S, Riginos C, Risch AC, Rueda M, Sankaran M, Sasaki T, Schoenecker KA, Schultz NL, Schütz M, Schwabe A, Siebert F, Smit C, Stahlheber KA, Storm C, Strong DJ, Su J, Tiruvaimozhi YV, Tyler C, Val J, Vandegehuchte ML, Veblen KE, Vermeire LT, Ward D, Wu J, Young TP, Yu Q, Zelikova TJ.

Nat Ecol Evol. 2018 Dec;2(12):1925-1932. doi: 10.1038/s41559-018-0696-y. Epub 2018 Oct 29.

PMID: 30374174

Origin of angiosperms and the puzzle of the Jurassic gap.

Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, Zhang ZR, Fu CN, Yang J, Hollingsworth PM, Chase MW, Soltis DE, Soltis PS, Li DZ.

Nat Plants. 2019 May;5(5):461-470. doi: 10.1038/s41477-019-0421-0. Epub 2019 May 6.

PMID: 31061536

A non-catalytic function of carbonic anhydrase IX contributes to the glycolytic phenotype and pH regulation in human breast cancer cells.

Mboge MY, Chen Z, Khokhar D, Wolff A, Ai L, Heldermon CD, Bozdag M, Carta F, Supuran CT, Brown KD, McKenna R, Frost CJ, Frost SC.

Biochem J. 2019 May 9. pii: BCJ20190177. doi: 10.1042/BCJ20190177.

PMID: 31072911

Clinical features, biochemistry and HLA-DRB1 status in youth-onset type 1 diabetes in Pakistan.

Fawwad A, Govender D, Ahmedani MY, Basit A, Lane JA, Mack SJ, Atkinson MA, Henry Wasserfall C, Ogle GD, Noble JA.

Diabetes Res Clin Pract. 2019 Mar;149:9-17. doi: 10.1016/j.diabres.2019.01.023. Epub 2019 Jan 30.

PMID: 30710658

Genome-Wide CRISPR Screening Identifies the Tumor Suppressor Candidate OVCA2 As a Determinant of Tolerance to Acetaldehyde.

Sobh A, Loguinov A, Stornetta A, Balbo S, Tagmount A, Zhang L, Vulpe CD.

Toxicol Sci. 2019 May 1;169(1):235-245. doi: 10.1093/toxsci/kfz037.

PMID: 31059574

A 42-Year-Old Man With Shortness of Breath, Fever, and Pleural Effusions.

Millar JK, Benninger LA, Li Y, Ataya A.

Chest. 2019 May;155(5):e141-e144. doi: 10.1016/j.chest.2018.10.035.

PMID: 31060711

Identification of a pathogenic mutation in ATP2A1 via in silico analysis of exome data for cryptic aberrant splice sites.

Bruels CC, Li C, Mendoza T, Khan J, Reddy HM, Estrella EA, Ghosh PS, Darras BT, Lidov HGW, Pacak CA, Kunkel LM, Modave F, Draper I, Kang PB.

Mol Genet Genomic Med. 2019 Mar;7(3):e552. doi: 10.1002/mgg3.552. Epub 2019 Jan 28.

PMID: 30688039

Genomic Comparison Reveals Natural Occurrence of Clinically Relevant Multi-Drug Resistant Extended-Spectrum β-lactamase producing Escherichia coli.

Teng L, Lee S, Ginn A, Markland SM, Mir R, DiLorenzo N, Boucher C, Prosperi M, Johnson J, Morris JG Jr, Jeong KC.

Appl Environ Microbiol. 2019 May 3. pii: AEM.03030-18. doi: 10.1128/AEM.03030-18. [Epub ahead of print]

PMID: 31053578

Sonic Hedgehog Signaling Is Required for Cyp26 Expression during Embryonic Development.

El Shahawy M, Reibring CG, Hallberg K, Neben CL, Marangoni P, Harfe BD, Klein OD, Linde A, Gritli-Linde A.

Int J Mol Sci. 2019 May 8;20(9). pii: E2275. doi: 10.3390/ijms20092275.

PMID: 31072004

HSP90 Inhibitor, NVP-AUY922, Improves Myelination in Vitro and Supports the Maintenance of Myelinated Axons in Neuropathic Mice.

Chittoor-Vinod VG, Bazick H, Todd AG, Falk D, Morelli KH, Burgess RW, Foster TC, Notterpek L.

ACS Chem Neurosci. 2019 May 3. doi: 10.1021/acschemneuro.9b00105.

PMID: 31017387

Developmental Pleiotropy Shaped the Roots of the Domesticated Common Bean Phaseolus vulgaris L.

Singh J, Gezan S, Vallejos CE.

Plant Physiol. 2019 May 6. pii: pp.01509.2018. doi: 10.1104/pp.18.01509.

PMID: 31061105

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication.

Zhuang W, Chen H, Yang M, Wang J, Pandey MK, Zhang C, Chang WC, Zhang L, Zhang X, Tang R, Garg V, Wang X, Tang H, Chow CN, Wang J, Deng Y, Wang D, Khan AW, Yang Q, Cai T, Bajaj P, Wu K, Guo B, Zhang X, Li J, Liang F, Hu J, Liao B, Liu S, Chitikineni A, Yan H, Zheng Y, Shan S, Liu Q, Xie D, Wang Z, Khan SA, Ali N, Zhao C, Li X, Luo Z, Zhang S, Zhuang R, Peng Z, Wang S, Mamadou G, Zhuang Y, Zhao Z, Yu W, Xiong F, Quan W, Yuan M, Li Y, Zou H, Xia H, Zha L, Fan J, Yu J, Xie W, Yuan J, Chen K, Zhao S, Chu W, Chen Y, Sun P, Meng F, Zhuo T, Zhao Y, Li C, He G, Zhao Y, Wang C, Kavikishor PB, Pan RL, Paterson AH, Wang X, Ming R, Varshney RK.

Nat Genet. 2019 May 1. doi: 10.1038/s41588-019-0402-2. [Epub ahead of print]

PMID: 31043757

Phenotypic and Genetic Diversity of Xanthomonas perforans Populations from Tomato in North Carolina.

Adhikari P, Adhikari T, Timilsina S, Meadows I, Jones JB, Panthee D, Louws F.

Phytopathology. 2019 Apr 30. doi: 10.1094/PHYTO-01-19-0019-R. [Epub ahead of print]

PMID: 31038016

Mitochondrial oxidative stress in the retinal pigment epithelium (RPE) led to metabolic dysfunction in both the RPE and retinal photoreceptors.

Brown EE, DeWeerd AJ, Ildefonso CJ, Lewin AS, Ash JD.

Redox Biol. 2019 Apr 20;24:101201. doi: 10.1016/j.redox.2019.101201.

PMID: 31039480

Next Generation of Adeno-Associated Virus Vectors for Gene Therapy for Human Liver Diseases.

Berns KI, Srivastava A.

Gastroenterol Clin North Am. 2019 Jun;48(2):319-330. doi: 10.1016/j.gtc.2019.02.005. Epub 2019 Apr 1. Review.

PMID: 31046978

Genomic Association Analysis Reveals Variants Associated with Blood Pressure Response to Beta-Blockers in European Americans.

Singh S, El Rouby N, McDonough CW, Gong Y, Bailey KR, Boerwinkle E, Chapman AB, Gums JG, Turner ST, Cooper-DeHoff RM, Johnson JA.

Clin Transl Sci. 2019 Apr 29. doi: 10.1111/cts.12643.

PMID: 31033190

Oncolytic virotherapy for small-cell lung cancer induces immune infiltration and prolongs survival.

Kellish P, Shabashvili D, Rahman MM, Nawab A, Guijarro MV, Zhang M, Cao C, Moussatche N, Boyle T, Antonia S, Reinhard M, Hartzell C, Jantz M, Mehta HJ, McFadden G, Kaye FJ, Zajac-Kaye M.

J Clin Invest. 2019 Apr 29;130. pii: 121323. doi: 10.1172/JCI121323. eCollection 2019 Apr 29.

PMID: 31033480

Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor.

Zhao J, Sauvage C, Zhao J, Bitton F, Bauchet G, Liu D, Huang S, Tieman DM, Klee HJ, Causse M.

Nat Commun. 2019 Apr 4;10(1):1534. doi: 10.1038/s41467-019-09462-w.

PMID: 30948717

Genetic diversity of Fusarium mexicanum, causal agent of mango and big-leaf mahogany malformation in Mexico.

Santillán-Mendoza R, Pineda-Vaca D, Fernández-Pavía SP, Montero-Castro JC, Goss EM, Benítez-Malvido J, Rodríguez-Alvarado G.

Mol Biol Rep. 2019 Apr 29. doi: 10.1007/s11033-019-04832-5. [Epub ahead of print]

PMID: 31037546

No borders during the post-glacial assembly of European bryophytes.

Ledent A, Désamoré A, Laenen B, Mardulyn P, McDaniel SF, Zanatta F, Patiño J, Vanderpoorten A.

Ecol Lett. 2019 Jun;22(6):973-986. doi: 10.1111/ele.13254. Epub 2019 Mar 22.

PMID: 30900805

Adeno-Associated Virus VP1u Exhibits Protease Activity.

Kurian JJ, Lakshmanan R, Chmely WM, Hull JA, Yu JC, Bennett A, McKenna R, Agbandje-McKenna M.

Viruses. 2019 Apr 29;11(5). pii: E399. doi: 10.3390/v11050399.

PMID: 31035643

DNA Methylation of Five Core Circadian Genes Jointly Contributes to Glucose Metabolism: A Gene-Set Analysis in Monozygotic Twins.

Peng H, Zhu Y, Goldberg J, Vaccarino V, Zhao J.

Front Genet. 2019 Apr 12;10:329. doi: 10.3389/fgene.2019.00329. eCollection 2019.

PMID: 31031806

Genomic merit for reproductive traits. II: Physiological responses of Holstein heifers.

Veronese A, Marques O, Peñagaricano F, Bisinotto RS, Pohler KG, Bilby TR, Chebel RC.

J Dairy Sci. 2019 Apr 25. pii: S0022-0302(19)30371-6. doi: 10.3168/jds.2018-15245. [Epub ahead of print]

PMID: 31030930

Genomic merit for reproductive traits. I: Estrous characteristics and fertility in Holstein heifers.

Veronese A, Marques O, Moreira R, Belli AL, Bisinotto RS, Bilby TR, Peñagaricano F, Chebel RC.

J Dairy Sci. 2019 Apr 25. pii: S0022-0302(19)30370-4. doi: 10.3168/jds.2018-15205. [Epub ahead of print]

PMID: 31030916

Linking mitochondrial dysfunction to organismal and population health in context of environmental pollutants: Progress and considerations for mitochondrial adverse outcome pathways.

Dreier DA, Mello D, Meyer J, Martyniuk CJ.

Environ Toxicol Chem. 2019 Apr 29. doi: 10.1002/etc.4453. [Epub ahead of print]

PMID: 31034624

HSFA2 Functions in the Physiological Adaptation of Undifferentiated Plant Cells to Spaceflight.

Zupanska AK, LeFrois C, Ferl RJ, Paul AL.

Int J Mol Sci. 2019 Jan 17;20(2). pii: E390. doi: 10.3390/ijms20020390.

PMID: 30658467

TMEM16A calcium-activated chloride currents in supporting cells of the mouse olfactory epithelium.

Henriques T, Agostinelli E, Hernandez-Clavijo A, Maurya DK, Rock JR, Harfe BD, Menini A, Pifferi S.

J Gen Physiol. 2019 May 2. pii: jgp.201812310. doi: 10.1085/jgp.201812310.

PMID: 31048412