UFGI Publication round-up week 5/20

28 May 2019

Reclassification of Xanthomonas gardneri (ex Šutič 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trébaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses.

Timilsina S, Kara S, Jacques MA, Potnis N, Minsavage GV, Vallad GE, Jones JB, Fischer-Le Saux M.

Int J Syst Evol Microbiol. 2019 Feb;69(2):343-349. doi: 10.1099/ijsem.0.003104. Epub 2018 Nov 20.

PMID: 30457512

Rates of niche and phenotype evolution lag behind diversification in a temperate radiation.

Folk RA, Stubbs RL, Mort ME, Cellinese N, Allen JM, Soltis PS, Soltis DE, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 May 13. pii: 201817999. doi: 10.1073/pnas.1817999116.

PMID: 31085636

Nuclear genomes of two magnoliids.

Soltis DE, Soltis PS.

Nat Plants. 2019 Jan;5(1):6-7. doi: 10.1038/s41477-018-0344-1. No abstract available.

PMID: 30626927

Lack of Association Between CTLA-4 Genetic Polymorphisms and Noncardiac Gastric Cancer in a Chinese Population.

Liu J, Tang W, Lin W, Wang Y, Chen Y, Wang J, Liu M, Xu W, Lin J, Zhang L.

DNA Cell Biol. 2019 May;38(5):443-448. doi: 10.1089/dna.2018.4555. Epub 2019 Mar 19.

PMID: 30888206

β₂ -Adrenergic Receptor Gene Affects the Heart Rate Response of β-Blockers: Evidence From 3 Clinical Studies.

Shahin MH, Rouby NE, Conrado DJ, Gonzalez D, Gong Y, Lobmeyer MT, Beitelshees AL, Boerwinkle E, Gums JG, Chapman A, Turner ST, Pepine CJ, Cooper-DeHoff RM, Johnson JA.

J Clin Pharmacol. 2019 May 14. doi: 10.1002/jcph.1443.

PMID: 31090079

Perillyl alcohol and perillic acid exert efficient action upon HSV-1 maturation and release of infective virus.

Mello CP, Quirico-Santos T, Amorim LF, Silva VG, Fragel LM, Bloom DC, Paixão IP.

Antivir Ther. 2019 May 16. doi: 10.3851/IMP3315.

PMID: 31099756

Kratom policy: The challenge of balancing therapeutic potential with public safety.

Prozialeck WC, Avery BA, Boyer EW, Grundmann O, Henningfield JE, Kruegel AC, McMahon LR, McCurdy CR, Swogger MT, Veltri CA, Singh D.

Int J Drug Policy. 2019 May 16;70:70-77. doi: 10.1016/j.drugpo.2019.05.003.

PMID: 31103778

The effects of mitragynine and morphine on schedule-controlled responding and antinociception in rats.

Hiranita T, Leon F, Felix JS, Restrepo LF, Reeves ME, Pennington AE, Obeng S, Avery BA, McCurdy CR, McMahon LR, Wilkerson JL.

Psychopharmacology (Berl). 2019 May 17. doi: 10.1007/s00213-019-05247-7.

PMID: 31098655

High-Throughput Reconstruction of Ancestral Protein Sequence, Structure, and Molecular Function.

Aadland K, Pugh C, Kolaczkowski B.

Methods Mol Biol. 2019;1851:135-170. doi: 10.1007/978-1-4939-8736-8_8.

PMID: 30298396

Targeting EIF4E signaling with ribavirin in infant acute lymphoblastic leukemia.

Urtishak KA, Wang LS, Culjkovic-Kraljacic B, Davenport JW, Porazzi P, Vincent TL, Teachey DT, Tasian SK, Moore JS, Seif AE, Jin S, Barrett JS, Robinson BW, Chen IL, Harvey RC, Carroll MP, Carroll AJ, Heerema NA, Devidas M, Dreyer ZE, Hilden JM, Hunger SP, Willman CL, Borden KLB, Felix CA.

Oncogene. 2019 Mar;38(13):2241-2262. doi: 10.1038/s41388-018-0567-7. Epub 2018 Nov 26.

PMID: 30478448

An Electrothermal Cu/W Bimorph Tip-Tilt-Piston MEMS Mirror with High Reliability.

Zhou L, Zhang X, Xie H.

Micromachines (Basel). 2019 May 14;10(5). pii: E323. doi: 10.3390/mi10050323.

PMID: 31091696

Monitorable Mitochondria-Targeting DNAtrain for Image-Guided Synergistic Cancer Therapy.

Jiang T, Zhou L, Liu H, Zhang P, Liu G, Gong P, Li C, Tan W, Chen J, Cai L.

Anal Chem. 2019 May 17. doi: 10.1021/acs.analchem.9b01777. [Epub ahead of print]

PMID: 31088071

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z.

Nat Genet. 2019 May 13. doi: 10.1038/s41588-019-0410-2. [Epub ahead of print]

PMID: 31086351

Posttranscription Initiation Control of Gene Expression Mediated by Bacterial RNA-Binding Proteins.

Babitzke P, Lai YJ, Renda A, Romeo T.

Annu Rev Microbiol. 2019 May 17. doi: 10.1146/annurev-micro-020518-115907. [Epub ahead of print]

PMID: 31100987

Islet amyloidosis in a child with type 1 diabetes.

Beery ML, Jacobsen LM, Atkinson MA, Butler AE, Campbell-Thompson M.

Islets. 2019 May 14:1-6. doi: 10.1080/19382014.2019.1599707. [Epub ahead of print]

PMID: 31084520

Erratum for Shen et al., “Identification of a Novel Enhancer/Chromatin Opening Element Associated with High-Level γ-Globin Gene Expression”.

Shen Y, Bassett MA, Gurumurthy A, Nar R, Knudson IJ, Guy CR, Perez A, Mellen RW, Ikeda M, Hossain MA, Huang S, Igarashi K, Bungert J.

Mol Cell Biol. 2019 May 14;39(11). pii: e00168-19. doi: 10.1128/MCB.00168-19. Print 2019 Jun 1. No abstract available.

PMID: 31088916

Rhodanese-like domain protein UbaC and its role in ubiquitin-like protein modification and sulfur mobilization in Archaea.

Hepowit NL, Maupin-Furlow JA.

J Bacteriol. 2019 May 13. pii: JB.00254-19. doi: 10.1128/JB.00254-19. [Epub ahead of print]

PMID: 31085691

Effects of intrauterine infusion of seminal plasma at artificial insemination on fertility of lactating Holstein cows.

Ortiz WG, Rizo JA, Carvalheira LR, Ahmed BMS, Estrada-Cortes E, Harstine BR, Bromfield JJ, Hansen PJ.

J Dairy Sci. 2019 May 15. pii: S0022-0302(19)30441-2. doi: 10.3168/jds.2019-16251.

PMID: 31103294

Effect of addition of l-carnitine to media for oocyte maturation and embryo culture on development and cryotolerance of bovine embryos produced in vitro.

Zolini AM, Carrascal-Triana E, Ruiz de King A, Hansen PJ, Alves Torres CA, Block J.

Theriogenology. 2019 May 7;133:135-143. doi: 10.1016/j.theriogenology.2019.05.005.

PMID: 31091484

Quality Improvement Goals for Acute Kidney Injury.

Kashani K, Rosner MH, Haase M, Lewington AJP, O’Donoghue DJ, Wilson FP, Nadim MK, Silver SA, Zarbock A, Ostermann M, Mehta RL, Kane-Gill SL, Ding X, Pickkers P, Bihorac A, Siew ED, Barreto EF, Macedo E, Kellum JA, Palevsky PM, Tolwani AJ, Ronco C, Juncos LA, Rewa OG, Bagshaw SM, Mottes TA, Koyner JL, Liu KD, Forni LG, Heung M, Wu VC.

Clin J Am Soc Nephrol . 2019 May 17. pii: CJN.01250119. doi: 10.2215/CJN.01250119.

PMID: 31101671

A Digital Acoustofluidic Pump Powered by Localized Fluid-Substrate Interactions.

Wu Z, Cai H, Ao Z, Nunez A, Liu H, Bondesson M, Guo S, Guo F.

Anal Chem. 2019 May 14. doi: 10.1021/acs.analchem.9b00069.

PMID: 31083981

Electrophysiologic Features of Radial Neuropathy in Childhood and Adolescence.

Karakis I, Georghiou S, Jones HR, Darras BT, Kang PB.

Pediatr Neurol. 2018 Apr;81:14-18. doi: 10.1016/j.pediatrneurol.2018.01.003. Epub 2018 Jan 31.

PMID: 29506771

Nicotinamide adenine dinucleotide induced resistance against root-knot nematode Meloidogyne hapla is based on increased tomato basal defense.

Abdelsamad N, Regmi H, Desaeger J, DiGennaro P.