UFGI Publication Round-Up: Week of 9/9/2024

Dzialas V, Doering E, Eich H, Strafella AP, Vaillancourt DE, Simonyan K, van Eimeren T; International Parkinson Movement Disorders Society‐Neuroimaging Study Group.

Mov Disord. 2024 Sep 5. doi: 10.1002/mds.30002. Online ahead of print.

PMID: 39235364

SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model.

Liu W, Zhong W, Giusti-Rodríguez P, Jiang Z, Wang GW, Sun H, Hu M, Li Y.

Brief Bioinform. 2024 Jul 25;25(5):bbae426. doi: 10.1093/bib/bbae426.

PMID: 39222061

Exploring Circadian Changes in Muscle Physiology: Methodological Considerations.

Viggars MR, Esser KA.

Function (Oxf). 2024 Sep 3:zqae038. doi: 10.1093/function/zqae038. Online ahead of print.

PMID: 39227174

Detecting altered hepatic lipid oxidation by MRI in an animal model of MASLD.

McLeod M, Chang MC, Rushin A, Ragavan M, Mahar R, Sharma G, Badar A, Giacalone A, Glanz ME, Malut VR, Graham D, Sunny NE, Bankson JA, Cusi K, Merritt ME.

Cell Rep Med. 2024 Aug 29:101714. doi: 10.1016/j.xcrm.2024.101714. Online ahead of print.

PMID: 39241774

Selection indices for residual feed intake derived from milk spectra.

Toledo-Alvarado HO, Tempelman RJ, Lopez-Cruz M, VandeHaar MJ, Santos JEP, Peñagaricano F, Khanal P, de Los Campos G.

J Dairy Sci. 2024 Aug 30:S0022-0302(24)01091-9. doi: 10.3168/jds.2023-24425. Online ahead of print.

PMID: 39218062

Deep graph representation learning influence maximization with accelerated inference.

Chowdhury T, Ling C, Jiang J, Wang J, Thai MT, Zhao L.

Neural Netw. 2024 Aug 31;180:106649. doi: 10.1016/j.neunet.2024.106649. Online ahead of print.

PMID: 39236410

Impact of diet and bacterial supplementation regimes on Orius strigicollis microbiota and life history performance.

Hung YT, Wong AC, Tang CK, Wu MC, Tuan SJ.

Sci Rep. 2024 Sep 5;14(1):20727. doi: 10.1038/s41598-024-70755-2.

PMID: 39237643

Optimization of self- or parent-reported psychiatric phenotypes in longitudinal studies.

Ivankovic F, Johnson S, Shen J, Scharf JM, Mathews CA.

J Child Psychol Psychiatry. 2024 Sep 9. doi: 10.1111/jcpp.14054. Online ahead of print.

PMID: 39246252

Integrating the Study of Polyploidy Across Organisms, Tissues, and Disease.

Morris JP, Baslan T, Soltis DE, Soltis PS, Fox DT.

Annu Rev Genet. 2024 Sep 3. doi: 10.1146/annurev-genet-111523-102124. Online ahead of print.

PMID: 39227132

Genomic resources of aquatic Lepidoptera, Elophila obliteralis and Hyposmocoma kahamanoa, reveal similarities with Trichoptera in amino acid composition of major silk genes.

Heckenhauer J, Plotkin D, Martinez JI, Bethin J, Pauls SU, Frandsen PB, Kawahara AY.

G3 (Bethesda). 2024 Sep 4;14(9):jkae093. doi: 10.1093/g3journal/jkae093.

PMID: 38722626

A sucrose ferulate cycle linchpin for ferulyolation of arabinoxylans in plant commelinids.

Yang D, Liu H, Li X, Zhang Y, Zhang X, Yang H, Liu M, Koch KE, McCarty DR, Li S, Tan BC.

Nat Plants. 2024 Sep 4. doi: 10.1038/s41477-024-01781-1. Online ahead of print.

PMID: 39232219

Correction to: Consensus guidance for monitoring individuals with islet autoantibody‑positive pre‑stage 3 type 1 diabetes.

Phillip M, Achenbach P, Addala A, Albanese-O’Neill A, Battelino T, Bell KJ, Besser REJ, Bonifacio E, Colhoun HM, Couper JJ, Craig ME, Danne T, de Beaufort C, Dovc K, Driscoll KA, Dutta S, Ebekozien O, Larsson HE, Feiten DJ, Frohnert BI, Gabbay RA, Gallagher MP, Greenbaum CJ, Griffin KJ, Hagopian W, Haller MJ, Hendrieckx C, Hendriks E, Holt RIG, Hughes L, Ismail HM, Jacobsen LM, Johnson SB, Kolb LE, Kordonouri O, Lange K, Lash RW, Lernmark Å, Libman I, Lundgren M, Maahs DM, Marcovecchio ML, Mathieu C, Miller KM, O’Donnell HK, Oron T, Patil SP, Pop-Busui R, Rewers MJ, Rich SS, Schatz DA, Schulman-Rosenbaum R, Simmons KM, Sims EK, Skyler JS, Smith LB, Speake C, Steck AK, Thomas NPB, Tonyushkina KN, Veijola R, Wentworth JM, Wherrett DK, Wood JR, Ziegler AG, DiMeglio LA.

Diabetologia. 2024 Sep 4. doi: 10.1007/s00125-024-06266-6. Online ahead of print.

PMID: 39230637

TYPE III COLLAGEN REGULATES MATRIX ARCHITECTURE AND MECHANOSENSING DURING WOUND HEALING.

Stewart DC, Brisson BK, Yen WK, Liu Y, Wang C, Ruthel G, Gullberg D, Mauck RL, Maden M, Han L, Volk SW.

J Invest Dermatol. 2024 Sep 3:S0022-202X(24)02078-5. doi: 10.1016/j.jid.2024.08.013. Online ahead of print.

PMID: 39236902

Continuing ECMO with no possible transition to recovery or transplant.

Supady A, Allen WL, Pope TM.

Lancet Respir Med. 2024 Sep 4:S2213-2600(24)00260-1. doi: 10.1016/S2213-2600(24)00260-1. Online ahead of print.

PMID: 39243789

Queuosine salvage in Bartonella henselae Houston 1: a unique evolutionary path.

Quaiyum S, Yuan Y, Sun G, Ratnayake RMMN, Hutinet G, Dedon PC, Minnick MF, de Crécy-Lagard V.

Microbiology (Reading). 2024 Sep;170(9). doi: 10.1099/mic.0.001490.

PMID: 39234940

Cerebrospinal fluid flow extends to peripheral nerves further unifying the nervous system.

Ligocki AP, Vinson AV, Yachnis AT, Dunn WA Jr, Smith DE, Scott EA, Alvarez-Castanon JV, Baez Montalvo DE, Frisone OG, Brown GAJ, Pessa JE, Scott EW.

Sci Adv. 2024 Sep 6;10(36):eadn3259. doi: 10.1126/sciadv.adn3259. Epub 2024 Sep 4.

PMID: 39231237

RNA-Seq time-course analysis of neural precursor cell transcriptome in response to herpes simplex Virus-1 infection.

Wood JA, Chaparala S, Bantang C, Chattopadhyay A, Wesesky MA, Kinchington PR, Nimgaonkar VL, Bloom DC, D’Aiuto L.

J Neurovirol. 2024 Apr;30(2):131-145. doi: 10.1007/s13365-024-01198-8. Epub 2024 Mar 13.

PMID: 38478163

SQANTI-reads: a tool for the quality assessment of long read data in multi-sample lrRNA-seq experiments.

Keil N, Monzó C, McIntyre L, Conesa A.

bioRxiv [Preprint]. 2024 Aug 25:2024.08.23.609463. doi: 10.1101/2024.08.23.609463.

PMID: 39229095

Genetic Determinants of Response to P2Y₁₂ Inhibitors and Clinical Implications.

Cavallari LH, Coons JC.

Interv Cardiol Clin. 2024 Oct;13(4):469-481. doi: 10.1016/j.iccl.2024.06.002. Epub 2024 Aug 1.

PMID: 39245547