UFGI Publication Round-up: Week of 5/6/24

Poukalov KK, Valero MC, Muscato DR, Adams LM, Chun H, Lee YI, Andrade NS, Zeier Z, Sweeney HL, Wang ET.

Proc Natl Acad Sci U S A. 2024 May 7;121(19):e2321438121. doi: 10.1073/pnas.2321438121. Epub 2024 Apr 30.

PMID: 38687782

Advances in genomics and genome editing for improving strawberry (Fragaria ×ananassa).

Vondracek K, Altpeter F, Liu T, Lee S.

Front Genet. 2024 Apr 19;15:1382445. doi: 10.3389/fgene.2024.1382445. eCollection 2024.

PMID: 38706796

An optimized approach to study nanoscale sarcomere structure utilizing super-resolution microscopy with nanobodies.

Douglas CM, Bird JE, Kopinke D, Esser KA.

PLoS One. 2024 Apr 30;19(4):e0300348. doi: 10.1371/journal.pone.0300348. eCollection 2024.

PMID: 38687705

Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer.

Yin R, Zhao H, Li L, Yang Q, Zeng M, Yang C, Bian J, Xie M.

bioRxiv [Preprint]. 2024 Apr 20:2024.04.15.589599. doi: 10.1101/2024.04.15.589599.

PMID: 38659732

Single-molecule long-read methylation profiling reveals regional DNA methylation regulated by Elongator Complex Subunit 2 in Arabidopsis roots experiencing spaceflight.

Zhou M, Riva A, Gauthier ML, Kladde MP, Ferl RJ, Paul AL.

Biol Direct. 2024 Apr 30;19(1):33. doi: 10.1186/s13062-024-00476-z.

PMID: 38689301

Reproductive and endocrine-disrupting toxicity of Pyrogallol in catfish (Clarias gariepinus).

Hamed M, Said REM, Martyniuk CJ, Soliman HAM, Sayed AEH, Osman AGM.

Environ Pollut. 2024 May 2:124104. doi: 10.1016/j.envpol.2024.124104. Online ahead of print.

PMID: 38703978

New role for cardiomyocyte Bmal1 in the regulation of sex-specific heart transcriptomes.

Zhang X, Procopio SB, Ding H, Semel MG, Schroder EA, Seward TS, Du P, Wu K, Johnson SR, Prabhat A, Schneider DJ, Stumpf IG, Rozmus ER, Huo Z, Delisle BP, Esser KA.

bioRxiv [Preprint]. 2024 Apr 21:2024.04.18.590181. doi: 10.1101/2024.04.18.590181.

PMID: 38659967

Pegvaliase for the treatment of phenylketonuria: Final results of a long-term phase 3 clinical trial program.

Harding CO, Longo N, Northrup H, Sacharow S, Singh R, Thomas JA, Vockley J, Zori RT, Bulloch Whitehall K, Lilienstein J, Lindstrom K, Levy DG, Jones S, Burton BK.

Mol Genet Metab Rep. 2024 Apr 23;39:101084. doi: 10.1016/j.ymgmr.2024.101084. eCollection 2024 Jun.

PMID: 38694233

RNA aggregates harness the danger response for potent cancer immunotherapy.

Mendez-Gomez HR, DeVries A, Castillo P, von Roemeling C, Qdaisat S, Stover BD, Xie C, Weidert F, Zhao C, Moor R, Liu R, Soni D, Ogando-Rivas E, Chardon-Robles J, McGuiness J, Zhang D, Chung MC, Marconi C, Michel S, Barpujari A, Jobin GW, Thomas N, Ma X, Campaneria Y, Grippin A, Karachi A, Li D, Sahay B, Elliott L, Foster TP, Coleman KE, Milner RJ, Sawyer WG, Ligon JA, Simon E, Cleaver B, Wynne K, Hodik M, Molinaro AM, Guan J, Kellish P, Doty A, Lee JH, Massini T, Kresak JL, Huang J, Hwang EI, Kline C, Carrera-Justiz S, Rahman M, Gatica S, Mueller S, Prados M, Ghiaseddin AP, Silver NL, Mitchell DA, Sayour EJ.

Cell. 2024 Apr 26:S0092-8674(24)00398-2. doi: 10.1016/j.cell.2024.04.003. Online ahead of print.

PMID: 38697107

Deficiency of the Deubiquitinase UCHL1 Attenuates Pulmonary Arterial Hypertension.

Tang H, Gupta A, Morrisroe SA, Bao C, Schwantes-An TH, Gupta G, Liang S, Sun Y, Chu A, Luo A, Ramamoorthi Elangovan V, Sangam S, Shi Y, Naidu SR, Jheng JR, Ciftci-Yilmaz S, Warfel NA, Hecker L, Mitra S, Coleman AW, Lutz KA, Pauciulo MW, Lai YC, Javaheri A, Dharmakumar R, Wu WH, Flaherty DP, Karnes JH, Breuils-Bonnet S, Boucherat O, Bonnet S, Yuan JX, Jacobson JR, Duarte JD, Nichols WC, Garcia JGN, Desai AA.

Circulation. 2024 May 2. doi: 10.1161/CIRCULATIONAHA.123.065304. Online ahead of print.

PMID: 38695173

Assessment of soil bacterial communities in integrated crop production systems within the Amazon Biome, Brazil: a comparative study.

do Carmo KB, Dias R, de Quadros PD, Berber GCM, Bourscheidt MLB, de Farias Neto AL, Dos Santos Weber OL, Triplett EW, Ferreira A.

Braz J Microbiol. 2024 May 2. doi: 10.1007/s42770-024-01352-8. Online ahead of print.

PMID: 38696039

Functional redundancy in tRNA dihydrouridylation.

Sudol C, Kilz LM, Marchand V, Thullier Q, Guérineau V, Goyenvalle C, Faivre B, Toubdji S, Lombard M, Jean-Jean O, de Crécy-Lagard V, Helm M, Motorin Y, Brégeon D, Hamdane D.

Nucleic Acids Res. 2024 Apr 29:gkae325. doi: 10.1093/nar/gkae325. Online ahead of print.

PMID: 38682613

Redox signaling and oxidative stress in systemic acquired resistance.

Liu C, Liu Q, Mou Z.

J Exp Bot. 2024 May 2:erae193. doi: 10.1093/jxb/erae193. Online ahead of print.

PMID: 38693779

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures.

Nair VD, Pincas H, Smith GR, Zaslavsky E, Ge Y, Amper MAS, Vasoya M, Chikina M, Sun Y, Raja AN, Mao W, Gay NR, Esser KA, Smith KS, Zhao B, Wiel L, Singh A, Lindholm ME, Amar D, Montgomery S, Snyder MP, Walsh MJ, Sealfon SC; MoTrPAC Study Group.

Cell Genom. 2024 Apr 29:100421. doi: 10.1016/j.xgen.2023.100421. Online ahead of print.

PMID: 38697122