UFGI Publication Round-up: Week of 5/13/24

Alpert JM, Sharma B, Cenko E, Zapata R, Karnati Y, Fillingim RB, Gill TM, Marsiske M, Ranka S, Manini T.

Educ Gerontol. 2024;50(4):282-295. doi: 10.1080/03601277.2023.2260970. Epub 2023 Sep 22.

PMID: 38737621

Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference.

Dong X, Leary JR, Yang C, Brusko MA, Brusko TM, Bacher R.

Brief Bioinform. 2024 Mar 27;25(3):bbae216. doi: 10.1093/bib/bbae216.

PMID: 38725155

The post-septic peripheral myeloid compartment reveals unexpected diversity in myeloid-derived suppressor cells.

Barrios EL, Leary JR, Darden DB, Rincon JC, Willis M, Polcz VE, Gillies GS, Munley JA, Dirain ML, Ungaro R, Nacionales DC, Gauthier ML, Larson SD, Morel L, Loftus TJ, Mohr AM, Maile R, Kladde MP, Mathews CE, Brusko MA, Brusko TM, Moldawer LL, Bacher R, Efron PA.

Front Immunol. 2024 Apr 24;15:1355405. doi: 10.3389/fimmu.2024.1355405. eCollection 2024.

PMID:

Transcriptomic Differences in Peripheral Monocyte Populations in Septic Patients Based on Outcome.

Barrios EL, Rincon JC, Willis M, Polcz VE, Leary J, Darden DB, Balch JA, Larson SD, Loftus TJ, Mohr AM, Wallet S, Brusko MA, Balzano-Nogueira L, Cai G, Sharma A, Upchurch GR Jr, Kladde MP, Mathews CE, Maile R, Moldawer LL, Bacher R, Efron PA.

Shock. 2024 May 2. doi: 10.1097/SHK.0000000000002379. Online ahead of print.

PMID: 38713581

Genomic resources of two aquatic Lepidoptera, Elophila obliteralis and Hyposmocoma kahamanoa, reveal similarities with Trichoptera in amino acid composition of major silk genes.

Heckenhauer J, Plotkin D, Martinez JI, Bethin J, Pauls SU, Frandsen PB, Kawahara AY.

G3 (Bethesda). 2024 May 9:jkae093. doi: 10.1093/g3journal/jkae093. Online ahead of print.

PMID: 38722626

The beta pore-forming bacterial pesticidal protein Tpp78Aa1 is toxic to the Asian citrus psyllid vector of the citrus greening bacterium.

Tavares CS, Mishra R, Kishk A, Wang X, Ghobrial PN, Killiny N, Bonning BC.

J Invertebr Pathol. 2024 May 4:108122. doi: 10.1016/j.jip.2024.108122. Online ahead of print.

PMID: 38710321

Antibiotic-Induced Gut Microbiota Dysbiosis Modulates Host Transcriptome and m⁶A Epitranscriptome via Bile Acid Metabolism.

Yang M, Zheng X, Fan J, Cheng W, Yan TM, Lai Y, Zhang N, Lu Y, Qi J, Huo Z, Xu Z, Huang J, Jiao Y, Liu B, Pang R, Zhong X, Huang S, Luo GZ, Lee G, Jobin C, Eren AM, Chang EB, Wei H, Pan T, Wang X.

Adv Sci (Weinh). 2024 May 7:e2307981. doi: 10.1002/advs.202307981. Online ahead of print.

PMID: 38713722

Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes.

Tiley GP, Crowl AA, Manos PS, Sessa EB, Solís-Lemus C, Yoder AD, Burleigh JG.

Syst Biol. 2024 May 11:syae024. doi: 10.1093/sysbio/syae024. Online ahead of print.

PMID: 38733563

Utilizing genomic prediction to boost hybrid performance in a sweet corn breeding program.

Peixoto MA, Leach KA, Jarquin D, Flannery P, Zystro J, Tracy WF, Bhering L, Resende MFR.

Front Plant Sci. 2024 Apr 25;15:1293307. doi: 10.3389/fpls.2024.1293307. eCollection 2024.

PMID: 38726298

Inactivation of mitochondrial MUL1 E3 ubiquitin ligase deregulates mitophagy and prevents diet-induced obesity in mice.

Cilenti L, Di Gregorio J, Mahar R, Liu F, Ambivero CT, Periasamy M, Merritt ME, Zervos AS.

Front Mol Biosci. 2024 Apr 25;11:1397565. doi: 10.3389/fmolb.2024.1397565. eCollection 2024.

PMID: 38725872

Impact of DNA ligase 1 and IIIα interactions with APE1 and polβ on the efficiency of base excision repair pathway at the downstream steps.

Almohdar D, Murcia D, Tang Q, Ortiz A, Martinez E, Parwal T, Kamble P, Çağlayan M.

J Biol Chem. 2024 May 6:107355. doi: 10.1016/j.jbc.2024.107355. Online ahead of print.

PMID: 38718860