UFGI Weekly Round-Up: Week of 12/30/24

Wu Z, Smith AR, Qian Z, Zheng G.

Expert Opin Ther Pat. 2024 Dec 26:1-16. doi: 10.1080/13543776.2024.2447056. Online ahead of print.

PMID: 39721070

DNA Ligase I Circularises Potato Spindle Tuber Viroid RNA in a Biomolecular Condensate.

Wang Y, Ma J, Hao J, Liu B, Wang Y.

Mol Plant Pathol. 2024 Dec;25(12):e70047. doi: 10.1111/mpp.70047.

PMID: 39715063

Multiomic molecular patterns of lipid dysregulation in a subphenotype of sepsis with higher shock incidence and mortality.

Augustin B, Wu D, Black LP, Bertrand A, Sulaiman D, Hopson C, Jacob V, Shavit JA, Hofmaenner DA, Labilloy G, Smith L, Cagmat E, Graim K, Datta S, Reddy ST, Guirgis FW.

Crit Care. 2024 Dec 24;28(1):431. doi: 10.1186/s13054-024-05216-3.

PMID: 39716214

Enhancing the Integration of Pre-Emptive Pharmacogenetic (PGx) Testing in Primary Care: Prioritizing Underserved Patients’ Preferences in Implementation.

Bryan EG, Lunsford K, Mullis MD, McFarlane A, Elwood E, Gawronski BE, Duarte JD, Fisher CL.

J Pers Med. 2024 Nov 29;14(12):1128. doi: 10.3390/jpm14121128.

PMID: 39728041

Comparison of genotyping assays for detection of targeted CRISPR/Cas mutagenesis in highly polyploid sugarcane.

Brant EJ, May D, Eid A, Altpeter F.

Front Genome Ed. 2024 Dec 12;6:1505844. doi: 10.3389/fgeed.2024.1505844. eCollection 2024.

PMID: 39726635

Leveraging pre-trained machine learning models for islet quantification in type 1 diabetes.

Kang S, Penaloza Aponte JD, Elashkar O, Morales JF, Waddington N, Lamb DG, Ju H, Campbell-Thompson M, Kim S.

J Pathol Inform. 2024 Nov 8;16:100406. doi: 10.1016/j.jpi.2024.100406. eCollection 2025 Jan.

PMID: 39720415

Long-read Transcriptomics of Caviid Gammaherpesvirus 1: Compiling a Comprehensive RNA Atlas.

Torma G, Dörmő Á, Fülöp Á, Tombácz D, Mizik M, Pretory AM, Lee SC, Toth Z, Boldogkői Z.

bioRxiv [Preprint]. 2024 Dec 13:2024.12.11.627975. doi: 10.1101/2024.12.11.627975.

PMID: 39713410

Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing.

Chen A, Paredes D, Yu Z, Lou X, Brunson R, Thomas JN, Martinez KA, Lucero RJ, Magoc T, Solberg LM, Snigurska UA, Ser SE, Prosperi M, Bian J, Bjarnadottir RI, Wu Y.

Proc (IEEE Int Conf Healthc Inform). 2024 Jun;2024:305-311. doi: 10.1109/ichi61247.2024.00046. Epub 2024 Aug 22.

PMID: 39726986

The Sdp-SH3b2 domain contained in Lactobacillus johnsonii N6.2-derived extracellular vesicles inhibit murine norovirus replication.

da Silva DR, Sharjeel AB, Beliakoff R, Teixeira LD, Kima PE, Jones MK, Gonzalez CF, Lorca GL.

Front Immunol. 2024 Dec 5;15:1490755. doi: 10.3389/fimmu.2024.1490755. eCollection 2024.

PMID: 39712028

Genome-wide CRISPR screen identifies AraC-Dauno-Eto (ADE) response modulators that predicts outcome in pediatric AML.

Nguyen NH, Rafiee R, Parcha PK, Tagmount A, Rubnitz J, Ribeiro RC, Cao X, Pounds SB, Vulpe CD, Lamba JK.

Blood Adv. 2024 Dec 23:bloodadvances.2024014157. doi: 10.1182/bloodadvances.2024014157. Online ahead of print.

PMID: 39715471

Environmental Control of Queuosine Levels in Streptococcus mutans tRNAs.

Jaroch M, Savage K, Kuipers P, Bacusmo JM, Hu J, Sun J, Dedon PC, Rice KC, de Crécy-Lagard V.

Mol Microbiol. 2024 Dec 25. doi: 10.1111/mmi.15336. Online ahead of print.

PMID: 39719891

Evolution of NAC transcription factors from early land plants to domesticated crops.

Kim T, Alvarez JC, Rana D, Preciado J, Liu T, Begcy K.

Plant Cell Physiol. 2024 Nov 12:pcae133. doi: 10.1093/pcp/pcae133. Online ahead of print.

PMID: 39720999