UFGI Weekly Round-Up: Week of 11/18/24

Sun C, Li Y, Marini S, Riva A, Wu DO, Fang R, Salemi M, Rife Magalis B.

Bioinform Adv. 2024 Nov 7;4(1):vbae158. doi: 10.1093/bioadv/vbae158. eCollection 2024.

PMID: 39529841

Antibiotic Prophylaxis for Elective Pediatric Laparoscopic Cholecystectomies.

Rodhouse C, Raymond R, Neal D, Loftus TJ, Khan FA, Do AR, Taylor JA, Efron PA, Larson SD, Raymond SL.

J Pediatr Surg. 2024 Nov 6;60(3):162055. doi: 10.1016/j.jpedsurg.2024.162055. Online ahead of print.

PMID: 39549681

Phylogenetic-informed graph deep learning to classify dynamic transmission clusters in infectious disease epidemics.

Sun C, Li Y, Marini S, Riva A, Wu DO, Fang R, Salemi M, Rife Magalis B.

Bioinform Adv. 2024 Nov 7;4(1):vbae158. doi: 10.1093/bioadv/vbae158. eCollection 2024.

PMID: 39529841

AIGen: an artificial intelligence software for complex genetic data analysis.

Hou T, Shen X, Zhang S, Liang M, Chen L, Lu Q.

Brief Bioinform. 2024 Sep 23;25(6):bbae566. doi: 10.1093/bib/bbae566.

PMID: 39550221

Characterization of Arabidopsis eskimo1 reveals a metabolic link between xylan O-acetylation and aliphatic glucosinolate metabolism.

Singh D, Zhao H, Gupta SK, Kumar Y, Kim J, Pawar PA.

Physiol Plant. 2024 Nov-Dec;176(6):e14618. doi: 10.1111/ppl.14618.

PMID: 39542838

Toxicity of microplastic fibers containing azobenzene disperse dyes to human lung epithelial cells cultured at an air-liquid interface.

O’Connor A, Villalobos Santeli A, Nannu Shankar S, Shirkhani A, Baker TR, Wu CY, Mehrad B, Ferguson PL, Sabo-Attwood T.

J Hazard Mater. 2024 Oct 28;480:136280. doi: 10.1016/j.jhazmat.2024.136280. Online ahead of print.

PMID: 39515142

In vitro impacts of glyphosate on manatee lymphocytes.

De Maria M, Garcia-Reyero N, Stacy NI, Abbott JR, Yu F, Pu R, Kroll KJ, Barboza FR, Walsh MT, Perez-Jimenez JG, Amador DAM, Hunter ME, Denslow ND.

Environ Int. 2024 Oct 16:109054. doi: 10.1016/j.envint.2024.109054. Online ahead of print.

PMID: 39537518

Identification of pathological pathways centered on circRNA dysregulation in association with irreversible progression of Alzheimer’s disease.

Wang F, Li Y, Shen H, Martinez-Feduchi P, Ji X, Teng P, Krishnakumar S, Hu J, Chen L, Feng Y, Yao B.

Genome Med. 2024 Nov 11;16(1):129. doi: 10.1186/s13073-024-01404-6.

PMID: 39529134

Genetic Characterisation of Feeding Patterns in Lactating Holstein Cows and Their Association With Feed Efficiency Traits.

Cavani L, Parker Gaddis KL, Baldwin RL, Santos JEP, Koltes JE, Tempelman RJ, VandeHaar MJ, White HM, Peñagaricano F, Weigel KA.

J Anim Breed Genet. 2024 Nov 11. doi: 10.1111/jbg.12911. Online ahead of print.

PMID: 39526828

Thinking outside the brain: Gut microbiome influence on innate immunity within neurodegenerative disease.

Merchak AR, Bolen ML, Tansey MG, Menees KB.

Neurotherapeutics. 2024 Oct;21(6):e00476. doi: 10.1016/j.neurot.2024.e00476. Epub 2024 Oct 31.

PMID: 39482179

A novel regimen for pancreatic ductal adenocarcinoma targeting MEK, BCL-xL, and EGFR.

Han S, Tushoski-Alemán GW, Zhang P, Zheng G, Zhou D, Huo Z, Licht J, George TJ, Allegra C, Trevino JG, Hughes SJ.

Neoplasia. 2024 Nov 13;59:101070. doi: 10.1016/j.neo.2024.101070. Online ahead of print.

PMID: 39541736

Metabolic and physiological effects of antibiotic-induced dysbiosis in citrus.

Ketehouli T, Goss EM, Ascunce MS, Martins SJ.

Ecotoxicol Environ Saf. 2024 Nov 13;287:117325. doi: 10.1016/j.ecoenv.2024.117325. Online ahead of print.

PMID: 39541699

Osteoblast Growth in Quaternized Silicon Carbon Nitride Coatings for Dental Implants.

Zhu H, Xia X, Chiang CC, Watson Levings RS, Correa J, Rocha FRG, Ghivizzani SC, Ren F, Neal D, Calderon PDS, Esquivel-Upshaw JF.

Materials (Basel). 2024 Nov 4;17(21):5392. doi: 10.3390/ma17215392.

PMID: 39517666

Flavokavains A- and B-Free Kava Enhances Resilience against the Adverse Health Effects of Tobacco Smoke in Mice.

Bian T, Lynch A, Ballas K, Mamallapalli J, Freeman B, Scala A, Wang Y, Traboulsi H, Chellian RK, Fagan A, Tang Z, Ding H, De U, Fredenburg KM, Huo Z, Baglole CJ, Zhang W, Reznikov LR, Bruijnzeel AW, Xing C.

ACS Pharmacol Transl Sci. 2024 Oct 2;7(11):3502-3517. doi: 10.1021/acsptsci.4c00415. eCollection 2024 Nov 8.

PMID: 39539272

A phylogenomic tree of wood-warblers (Aves: Parulidae): Dealing with good, bad, and ugly samples.

Zhao M, Oswald JA, Allen JM, Owens HL, Hosner PA, Guralnick RP, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2024 Nov 12:108235. doi: 10.1016/j.ympev.2024.108235. Online ahead of print.

PMID: 39542406

Evaluating drinking water treatment residuals as an in-situ capping material for metal-contaminated sediments.

Wei J, Zheng Y, Zhou L, Kroll KJ, Wallace SM, Denslow ND, Gaillard JF, Bonzongo JJ.

Chemosphere. 2024 Nov 13;368:143712. doi: 10.1016/j.chemosphere.2024.143712. Online ahead of print.

PMID: 39521291

Switching treatment to cipaglucosidase alfa plus miglustat positively affects patient-reported outcome measures in patients with late-onset Pompe disease.

Kishnani PS, Byrne BJ, Claeys KG, Díaz-Manera J, Dimachkie MM, Kushlaf H, Mozaffar T, Roberts M, Schoser B, Hummel N, Kopiec A, Holdbrook F, Shohet S, Toscano A; PROPEL Study Group.

J Patient Rep Outcomes. 2024 Nov 13;8(1):132. doi: 10.1186/s41687-024-00805-w.

PMID: 39535661

Functional evolution and functional biodiversity: 150 years of déjà vu or new physiology of evolution?

Moroz LL, Romanova DY.

Front Cell Dev Biol. 2024 Oct 24;12:1485089. doi: 10.3389/fcell.2024.1485089. eCollection 2024.

PMID: 39512903

Assessment of the relative cardiotoxicity and behavioral effects of butylated hydroxytoluene and its metabolites in developing zebrafish (Danio rerio).

Hao Q, Shi Z, Liang X, Zhang W, Meng Q, Martyniuk CJ.

Sci Total Environ. 2024 Nov 15:177518. doi: 10.1016/j.scitotenv.2024.177518. Online ahead of print.

PMID: 39551212

Spatial and quantitative gene expression analysis of SREB receptors in the gonads of green-spotted pufferfish (Dichotomyctere nigroviridis).

Breton TS, Oliveira ME, Chillemi T, Harriman W, Korasadowicz J, Saverese E, Bourget E, Murray CA, Martyniuk CJ, DiMaggio MA.

Gen Comp Endocrinol. 2024 Nov 11:114641. doi: 10.1016/j.ygcen.2024.114641. Online ahead of print.

PMID: 39536984