UFGI Publication Round-Up: Week of 9/30/24

Jin W, Xia Y, Nizomov J, Liu Y, Li Z, Lu Q, Chen L.

Bioinformatics. 2024 Sep 26:btae578. doi: 10.1093/bioinformatics/btae578. Online ahead of print.

PMID: 39325859

Phage against the Machine: The SIE-ence of Superinfection Exclusion.

Bucher MJ, Czyż DM.

Viruses. 2024 Aug 23;16(9):1348. doi: 10.3390/v16091348.

PMID: 39339825

Identification of proteotoxic and proteoprotective bacteria that non-specifically affect proteins associated with neurodegenerative diseases.

Walker AC, Bhargava R, Bucher MJ, Argote YM, Brust AS, Czyż DM.

iScience. 2024 Aug 27;27(9):110828. doi: 10.1016/j.isci.2024.110828. eCollection 2024 Sep 20.

PMID: 39310761

Modulation of cannabinoid receptor 2 alters neuroinflammation and reduces formation of alpha-synuclein aggregates in a rat model of nigral synucleinopathy.

Joers V, Murray BC, McLaughlin C, Oliver D, Staley HE, Coronado J, Achat-Mendes C, Golshani S, Kelly SD, Goodson M, Lee D, Manfredsson FP, Moore Ii BM, Tansey MG.

J Neuroinflammation. 2024 Sep 27;21(1):240. doi: 10.1186/s12974-024-03221-5.

PMID: 39334169

Corrigendum to “Assessing feed efficiency in early and mid lactation and its associations with performance and health in Holstein cows” (J. Dairy Sci. 104:5493-5507).

Nehme Marinho M, Zimpel R, Peñagaricano F, Santos JEP.

J Dairy Sci. 2024 Oct;107(10):8746. doi: 10.3168/jds.2024-107-10-8746.

PMID: 39307550

Investigating relationships between the host genome, rumen microbiome, and dairy cow feed efficiency using mediation analysis with structural equation modeling.

Martinez-Boggio G, Monteiro HF, Lima FS, Figueiredo CC, Bisinotto RS, Santos JEP, Mion B, Schenkel FS, Ribeiro ES, Weigel KA, Rosa GJM, Peñagaricano F.

J Dairy Sci. 2024 Oct;107(10):8193-8204. doi: 10.3168/jds.2024-24675. Epub 2024 Jun 20.

PMID: 38908714

Dietary supplementation of rumen native microbes improves lactation performance and feed efficiency in dairy cows.

Nehme Marinho M, Perdomo MC, Souza Simões B, Husnain A, Arshad U, Figueiredo CC, Santos JEP.

J Dairy Sci. 2024 Oct;107(10):7918-7931. doi: 10.3168/jds.2024-24795. Epub 2024 Jun 13.

PMID: 38876222

Assessing different cross-validation schemes for predicting novel traits using sensor data: An application to dry matter intake and residual feed intake using milk spectral data.

Yilmaz Adkinson A, Abouhawwash M, VandeHaar MJ, Parker Gaddis KL, Burchard J, Peñagaricano F, White HM, Weigel KA, Baldwin R, Santos JEP, Koltes JE, Tempelman RJ.

J Dairy Sci. 2024 Oct;107(10):8084-8099. doi: 10.3168/jds.2024-24701. Epub 2024 Jun 13.

PMID: 38876215

Genetic relationships between behavioral traits and feed efficiency traits in lactating Holstein cows.

Nascimento BM, Cavani L, Caputo MJ, Marinho MN, Borchers MR, Wallace RL, Santos JEP, White HM, Peñagaricano F, Weigel KA.

J Dairy Sci. 2024 Oct;107(10):8141-8149. doi: 10.3168/jds.2023-24526. Epub 2024 May 31.

PMID: 38825121

Torque Teno Sus Virus 1: A Potential Surrogate Pathogen to Study Pig-Transmitted Transboundary Animal Diseases.

Li X, Parker BM, Boughton RK, Beasley JC, Smyser TJ, Austin JD, Pepin KM, Miller RS, Vercauteren KC, Wisely SM.

Viruses. 2024 Aug 31;16(9):1397. doi: 10.3390/v16091397.

PMID: 39339873

Evolutionary trajectory of transcription factors and selection of targets for metabolic engineering.

Lee YS, Braun EL, Grotewold E.

Philos Trans R Soc Lond B Biol Sci. 2024 Nov 18;379(1914):20230367. doi: 10.1098/rstb.2023.0367. Epub 2024 Sep 30.

PMID: 39343015

A fungal effector suppresses plant immunity by manipulating DAHPS-mediated metabolic flux in chloroplasts.

Shang S, Liang X, Liu G, Du Y, Zhang S, Meng Y, Zhu J, Rollins JA, Zhang R, Sun G.

New Phytol. 2024 Sep 26. doi: 10.1111/nph.20117. Online ahead of print.

PMID: 39327824

Associations between adolescent perceived loneliness and hair cortisol concentration.

Anderson AM, Sherman J, Fitzpatrick MM, Browning C, Kertes DA, Mackos A, Pickler RH, Smith L, Ford JL.

Psychoneuroendocrinology. 2024 Sep 16;170:107184. doi: 10.1016/j.psyneuen.2024.107184. Online ahead of print.

PMID: 39332136

The sandwich feeding assay for use with first instar nymphs of the Asian citrus psyllid, Diaphorina citri confirms the high susceptibility of this life stage to bacterial pesticidal proteins.

Tavares CS, Stelinski LL, Bonning BC.

J Invertebr Pathol. 2024 Sep 22;207:108208. doi: 10.1016/j.jip.2024.108208. Online ahead of print.

PMID: 39317311

Combined assembloid modeling and 3D whole-organ mapping captures the microanatomy and function of the human fallopian tube.

Crawford AJ, Forjaz A, Bons J, Bhorkar I, Roy T, Schell D, Queiroga V, Ren K, Kramer D, Huang W, Russo GC, Lee MH, Wu PH, Shih IM, Wang TL, Atkinson MA, Schilling B, Kiemen AL, Wirtz D.

Sci Adv. 2024 Sep 27;10(39):eadp6285. doi: 10.1126/sciadv.adp6285. Epub 2024 Sep 27.

PMID: 39331707

One-Year Thermostability of Commercial Glargine and Human Insulin.

Christopher MW, Veigle O, Lloyd S, Mcgrail S, Lee JH, Bazargani SF, Atkinson PM, Haller MJ, Atkinson MA, Garrett TJ.

Diabetes Care. 2024 Sep 24:dc241749. doi: 10.2337/dc24-1749. Online ahead of print.

PMID: 39316384

Electron microscopy evidence of gadolinium toxicity being mediated through cytoplasmic membrane dysregulation.

Arino T, Faulkner D, Bustillo KC, An DD, Jorgens D, Hébert S, McKinley C, Proctor M, Loguinov A, Vulpe C, Abergel RJ.

Metallomics. 2024 Sep 23:mfae042. doi: 10.1093/mtomcs/mfae042. Online ahead of print.

PMID: 39313325

Phenotypic and Genetic Diversity of Xanthomonads Isolated from Pepper (Capsicum spp.) in Taiwan from 1989 to 2019.

Parajuli A, Subedi A, Timilsina S, Minsavage GV, Kenyon L, Chen JR, Goss EM, Paret ML, Jones JB.

Phytopathology. 2024 Sep;114(9):2033-2044. doi: 10.1094/PHYTO-11-23-0449-R. Epub 2024 Sep 16.

PMID: 38809758

Calculation of the effect of pain sensitization on opioid-induced hyperalgesia in knee osteoarthritis: comment on the article by Aoyagi et al.

Bubb MR.

Arthritis Care Res (Hoboken). 2024 Oct;76(10):1444. doi: 10.1002/acr.25379. Epub 2024 Jun 17.

PMID: 38782599

High-resolution methylome analysis uncovers stress-responsive genomic hotspots and drought-sensitive transposable element superfamilies in the clonal Lombardy poplar.

Peña-Ponton C, Diez-Rodriguez B, Perez-Bello P, Becker C, McIntyre LM, van der Putten WH, De Paoli E, Heer K, Opgenoorth L, Verhoeven KJF.

J Exp Bot. 2024 Sep 27;75(18):5839-5856. doi: 10.1093/jxb/erae262.

PMID: 38836523

Pangenomic and biochemical analyses of Helcococcus ovis reveal widespread tetracycline resistance and a novel bacterial species, Helcococcus bovis.

Cunha F, Zhai Y, Casaro S, Jones KL, Hernandez M, Bisinotto RS, Kariyawasam S, Brown MB, Phillips A, Jeong KC, Galvão KN.

Front Microbiol. 2024 Sep 10;15:1456569. doi: 10.3389/fmicb.2024.1456569. eCollection 2024.

PMID: 39318438

The genome sequence of the 6-spot burnet, Zygaena filipendulae (Linnaeus, 1758).

Boyes D, Crowley LM; University of Oxford and Wytham Woods Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; Tree of Life Core Informatics collective; Skojec C, Plotkin D, Kawahara AY; Darwin Tree of Life Consortium.

Wellcome Open Res. 2024 Mar 18;7:197. doi: 10.12688/wellcomeopenres.17924.2. eCollection 2022.

PMID: 39323974

Cell size differences affect photosynthetic capacity in a Mesoamerican and an Andean genotype of Phaseolus vulgaris L.

Egesa AO, Vallejos CE, Begcy K.

Front Plant Sci. 2024 Sep 11;15:1422814. doi: 10.3389/fpls.2024.1422814. eCollection 2024.

PMID: 39328793