UFGI Publication Round-Up: Week of 8/19/24

Manohar-Sindhu S, Merfeld-Clauss S, March KL, Traktuev DO.

Stem Cells Dev. 2024 Aug;33(15-16):399-411. doi: 10.1089/scd.2024.0092. Epub 2024 Jul 5.

PMID: 38877807

Development and optimization of a diluted whole blood ELISpot assay to test immune function.

Ungaro RF, Xu J, Kucaba TA, Rao M, Bergmann CB, Brakenridge SC, Efron PA, Goodman MD, Gould RW, Hotchkiss RS, Liang M, Mazer MB, McGonagill PW, Moldawer LL, Remy KE, Turnbull IR, Caldwell CC, Badovinac VP, Griffith TS.

J Immunol Methods. 2024 Aug 13:113743. doi: 10.1016/j.jim.2024.113743. Online ahead of print.

PMID: 39147231

Incorporating Patient Values in Large Language Model Recommendations for Surrogate and Proxy Decisions.

Nolan VJ, Balch JA, Baskaran NP, Shickel B, Efron PA, Upchurch GR Jr, Bihorac A, Tignanelli CJ, Moseley RE, Loftus TJ.

Crit Care Explor. 2024 Aug 12;6(8):e1131. doi: 10.1097/CCE.0000000000001131. eCollection 2024 Aug 1.

PMID: 39132980

BrainSegFounder: Towards 3D foundation models for neuroimage segmentation.

Cox J, Liu P, Stolte SE, Yang Y, Liu K, See KB, Ju H, Fang R.

Med Image Anal. 2024 Aug 8;97:103301. doi: 10.1016/j.media.2024.103301. Online ahead of print.

PMID: 39146701

DNA methylation analysis reveals local changes in resistant and susceptible soybean lines in response to Phytophthora sansomeana.

DiBiase CN, Cheng X, Lee G, Moore RC, McCoy AG, Chilvers MI, Sun L, Wang D, Lin F, Zhao M.

G3 (Bethesda). 2024 Aug 14:jkae191. doi: 10.1093/g3journal/jkae191. Online ahead of print.

PMID: 39141590

What the trained eye cannot see: Quantitative kinematics and machine learning detect movement deficits in early-stage Parkinson’s disease from videos.

Guarín DL, Wong JK, McFarland NR, Ramirez-Zamora A, Vaillancourt DE.

Parkinsonism Relat Disord. 2024 Aug 14;127:107104. doi: 10.1016/j.parkreldis.2024.107104. Online ahead of print.

PMID: 39153421

Dry matter intake in US Holstein cows: Exploring the genomic and phenotypic impact of milk components and body weight composite.

Toghiani S, VanRaden PM, VandeHaar MJ, Baldwin RL, Weigel KA, White HM, Peñagaricano F, Koltes JE, Santos JEP, Parker Gaddis KL, Tempelman RJ.

J Dairy Sci. 2024 Sep;107(9):7009-7021. doi: 10.3168/jds.2023-24296. Epub 2024 May 15.

PMID: 38754817

Oral Cannabidiol Treatment Is Associated with an Anti-Inflammatory Gene Expression Signature in Myeloid Cells of People Living with HIV.

Marini S, Huber A, Cash MN, Salemi M, Cook RL, Borsa P, Mavian CN.

Cannabis Cannabinoid Res. 2024 Aug;9(4):1028-1037. doi: 10.1089/can.2023.0139. Epub 2024 Jan 22.

PMID: 38252549

Redox signaling and oxidative stress in systemic acquired resistance.

Liu C, Liu Q, Mou Z.

J Exp Bot. 2024 Aug 12;75(15):4535-4548. doi: 10.1093/jxb/erae193.

PMID: 38693779

Assessing inorganic nanoparticle toxicity through omics approaches.

Li Y, Vulpe C, Lammers T, Pallares RM.

Nanoscale. 2024 Aug 15. doi: 10.1039/d4nr02328e. Online ahead of print.

PMID: 39145718

Bootstrap Evaluation of Association Matrices (BEAM) for Integrating Multiple Omics Profiles with Multiple Outcomes.

Seffernick AE, Cao X, Cheng C, Yang W, Autry RJ, Yang JJ, Pui CH, Teachey DT, Lamba JK, Mullighan CG, Pounds SB.

bioRxiv [Preprint]. 2024 Aug 3:2024.07.31.605805. doi: 10.1101/2024.07.31.605805.

PMID: 39131398

Type 1 diabetes prevention clinical trial simulator: Case reports of model-informed drug development tool.

Morales JF, Klose M, Hoffert Y, Podichetty JT, Burton J, Schmidt S, Romero K, O’Doherty I, Martin F, Campbell-Thompson M, Haller MJ, Atkinson MA, Kim S.

CPT Pharmacometrics Syst Pharmacol. 2024 Aug;13(8):1309-1316. doi: 10.1002/psp4.13193. Epub 2024 Jul 3.

PMID: 38961520

Precision Antiplatelet Therapy after Percutaneous Coronary Intervention (Precision PCI) Registry – Informing optimal antiplatelet strategies.

Cavallari LH, Lee CR, Franchi F, Keeley EC, Rossi JS, Thomas CD, Gong Y, McDonough CW, Starostik P, Al Saeed MJ, Been L, Kulick N, Malave J, Mulrenin IR, Nguyen AB, Terrell JN, Tillotson G, Beitelshees AL, Winterstein AG, Stouffer GA, Angiolillo DJ.

Clin Transl Sci. 2024 Aug;17(8):e70004. doi: 10.1111/cts.70004.

PMID: 39150361

Dataset for clinical parameters and disease transcriptome networks associated with exposure to citalopram in zebrafish (Danio rerio) larvae.

Kazi KJ, English CD, Ivantsova E, Souders CL 2nd, Martyniuk CJ.

Data Brief. 2024 Jul 16;55:110756. doi: 10.1016/j.dib.2024.110756. eCollection 2024 Aug.

PMID: 39156672

Mechanisms of mitochondrial resilience in teleostean radial glia under hypoxic stress.

Fu J, Martyniuk CJ, Zhou L, Guo X, Chi W.

Comp Biochem Physiol C Toxicol Pharmacol. 2024 Aug 14:110001. doi: 10.1016/j.cbpc.2024.110001. Online ahead of print.

PMID: 39151815

Increased expression of metabolism and lysosome-associated genes in a C. elegans dpy-7 cuticle furrow mutant.

Fong A, Rodriguez M, Choe KP.

MicroPubl Biol. 2024 Jul 31;2024:10.17912/micropub.biology.001241. doi: 10.17912/micropub.biology.001241. eCollection 2024.

PMID: 39144098

Establishing CRISPR-Cas9 in the sexually dimorphic moss, Ceratodon purpureus.

Tavernier EK, Perroud PF, Lockwood E, Nogué F, McDaniel SF.

Plant J. 2024 Aug 18. doi: 10.1111/tpj.16946. Online ahead of print.

PMID: 39154335

The genome sequence of the Buff Footman, Eilema depressum (Esper, 1787).

Boyes D, Skojec C, Kawahara AY; University of Oxford and Wytham Woods Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; Tree of Life Core Informatics collective; Darwin Tree of Life Consortium.

Wellcome Open Res. 2023 Aug 11;8:342. doi: 10.12688/wellcomeopenres.19808.1. eCollection 2023.

PMID: 39145283

Longitudinal Assessment of Communication with Patient-Reported Outcomes During Lung Cancer Screening.

Slatore CG, Golden SE, Schweiger L, Ilea I, Sullivan DR, Rice SPM, Wiener RS, Datta S, Davis JM, Melzer AC.

Chest. 2024 Aug 10:S0012-3692(24)04907-9. doi: 10.1016/j.chest.2024.06.3817. Online ahead of print.

PMID: 39134143

Deciphering internal and external factors influencing intestinal junctional complexes.

Markovich Z, Abreu A, Sheng Y, Han SM, Xiao R.

Gut Microbes. 2024 Jan-Dec;16(1):2389320. doi: 10.1080/19490976.2024.2389320. Epub 2024 Aug 16.

PMID: 39150987

Therapeutic targeting of RNA for neurological and neuromuscular disease.

Bubenik JL, Scotti MM, Swanson MS.

Genes Dev. 2024 Aug 14. doi: 10.1101/gad.351612.124. Online ahead of print.

PMID: 39142832

Pseudomonas fragariae sp. nov., a novel bacterial species causing leaf spots on strawberry (Fragaria×ananassa).

Marin MV, Carvalho R, Paret ML, Jones JB, Peres NA.

Int J Syst Evol Microbiol. 2024 Aug;74(8):006476. doi: 10.1099/ijsem.0.006476.

PMID: 39141420

Direct inference of the distribution of fitness effects of spontaneous mutations from recombinant inbred C. elegans mutation accumulation lines.

Crombie TA, Rajaei M, Saxena AS, Johnson LM, Saber S, Tanny RE, Ponciano JM, Andersen EC, Zhou J, Baer CF.

Genetics. 2024 Aug 14:iyae136. doi: 10.1093/genetics/iyae136. Online ahead of print.

PMID: 39139098