UFGI Publication Round-up: Week of 4/4/22

Thummuri D, Khan S, Underwood PW, Zhang P, Wiegand J, Zhang X, Budamagunta V, Sobh A, Tagmount A, Loguinov A, Riner AN, Akki AS, Williamson E, Hromas R, Vulpe CD, Zheng G, Trevino JG, Zhou D.

Mol Cancer Ther. 2022 Jan;21(1):184-192. doi: 10.1158/1535-7163.MCT-21-0474. Epub 2021 Oct 19.

PMID: 34667112

Genes affecting ionizing radiation survival identified through combined exome sequencing and functional screening.

Gupta M, Liu X, Teraoka SN, Wright JA, Gatti RA, Quinlan A, Concannon P.

Hum Mutat. 2021 Sep;42(9):1124-1138. doi: 10.1002/humu.24241. Epub 2021 Jul 6.

PMID: 34153142

Suppressing the activation of protein kinase A as a DNA damage-independent mechanistic lead for dihydromethysticin (DHM) prophylaxis of NNK-induced lung carcinogenesis.

Bian T, Ding H, Wang Y, Hu Q, Chen S, Fujioka N, Aly FZ, Lu J, Huo Z, Xing C.

Carcinogenesis. 2022 Mar 30:bgac031. doi: 10.1093/carcin/bgac031. Online ahead of print.

PMID: 35353881

Comparative Transcriptomics of the Northern Quahog Mercenaria mercenaria and Southern Quahog Mercenaria campechiensis in Response to Chronic Heat Stress.

Song J, Austin JD, Yang H.

Mar Biotechnol (NY). 2022 Mar 31. doi: 10.1007/s10126-022-10101-7. Online ahead of print.

PMID: 35357634

A synthetic ‘essentialome’ for axenic culturing of ‘Candidatus Liberibacter asiaticus’.

Cai L, Jain M, Munoz-Bodnar A, Huguet-Tapia JC, Gabriel DW.

BMC Res Notes. 2022 Apr 1;15(1):125. doi: 10.1186/s13104-022-05986-5.

PMID: 35365194

Time to reconsider CD33 single nucleotide polymorphism in the response to gemtuzumab ozogamicin.

Lamba JK, Meshinchi S.

Haematologica. 2021 Nov 1;106(11):2796-2798. doi: 10.3324/haematol.2021.279043.

PMID: 34092060

Simple, efficient and open-source CRISPR/Cas9 strategy for multi-site genome editing in Populus tremula × alba.

Triozzi PM, Schmidt HW, Dervinis C, Kirst M, Conde D.

Tree Physiol. 2021 Nov 8;41(11):2216-2227. doi: 10.1093/treephys/tpab066.

PMID: 33960379

Temporally Regulated Plant-Nematode Gene Networks Implicate Metabolic Pathways.

Mishra S, Salichs O, DiGennaro P.

Mol Plant Microbe Interact. 2022 Mar 26. doi: 10.1094/MPMI-10-21-0256-FI. Online ahead of print.

PMID: 35343249

Acute and Chronic Toxicity Testing of Drinking Water Treatment Residuals in Freshwater Systems.

Zhou L, Wallace SM, Kroll KJ, Denslow ND, Gaillard JF, Meyer P, Bonzongo JJ.

Environ Toxicol Chem. 2021 Jul;40(7):2005-2014. doi: 10.1002/etc.5061. Epub 2021 May 25.

PMID: 33818832

Longitudinal trajectories of HIV care engagement since diagnosis among persons with HIV in the Florida Ryan White program.

Liu Y, Rich SN, Siddiqi KA, Chen Z, Prosperi M, Spencer E, Cook RL.

AIDS Behav. 2022 Apr 1. doi: 10.1007/s10461-022-03659-9. Online ahead of print.

PMID: 35362911

The TP53 Database: transition from the International Agency for Research on Cancer to the US National Cancer Institute.

de Andrade KC, Lee EE, Tookmanian EM, Kesserwan CA, Manfredi JJ, Hatton JN, Loukissas JK, Zavadil J, Zhou L, Olivier M, Frone MN, Shahzada O, Longabaugh WJR, Kratz CP, Malkin D, Hainaut P, Savage SA.

Cell Death Differ. 2022 Mar 29. doi: 10.1038/s41418-022-00976-3. Online ahead of print.

PMID: 35352025

Tumor Treating Fields Suppression of Ciliogenesis Enhances Temozolomide Toxicity.

Shi P, Tian J, Ulm BS, Mallinger JC, Khoshbouei H, Deleyrolle LP, Sarkisian MR.

Front Oncol. 2022 Mar 11;12:837589. doi: 10.3389/fonc.2022.837589. eCollection 2022.

PMID: 35359402

Application of machine learning to predict the inhibitory activity of organic chemicals on thyroid stimulating hormone receptor.

Xu X, Wang C, Gui B, Yuan X, Li C, Zhao Y, Martyniuk CJ, Su L.

Environ Res. 2022 Mar 26;212(Pt A):113175. doi: 10.1016/j.envres.2022.113175. Online ahead of print.

PMID: 35351457

Tumor Necrosis Factor Alpha and the Gastrointestinal Epithelium: Implications for the Gut-Brain Axis and Hypertension.

Souders CL 2nd, Zubcevic J, Martyniuk CJ.

Cell Mol Neurobiol. 2022 Mar;42(2):419-437. doi: 10.1007/s10571-021-01044-z. Epub 2021 Feb 16.

PMID: 33594519

Phylogenetic position of Bopyroides hippolytes, with comments on the rearrangement of the mitochondrial genome in isopods (Isopoda: Epicaridea: Bopyridae).

Wu R, Guo R, Xi Q, Paulay G, An J.

BMC Genomics. 2022 Apr 2;23(1):253. doi: 10.1186/s12864-022-08513-9.

PMID: 35366795

Stasis and diversity in living fossils: species delimitation and evolution of lingulid brachiopods.

Goto R, Takano T, Seike K, Yamashita M, Paulay G, Rodgers KS, Hunter CL, Tongkerd P, Sato S, Hong JS, Endo K.

Mol Phylogenet Evol. 2022 Mar 28:107460. doi: 10.1016/j.ympev.2022.107460. Online ahead of print.

PMID: 35358691

Paleozoic origins of cheilostome bryozoans and their parental care inferred by a new genome-skimmed phylogeny.

Orr RJS, Di Martino E, Ramsfjell MH, Gordon DP, Berning B, Chowdhury I, Craig S, Cumming RL, Figuerola B, Florence W, Harmelin JG, Hirose M, Huang D, Jain SS, Jenkins HL, Kotenko ON, Kuklinski P, Lee HE, Madurell T, McCann L, Mello HL, Obst M, Ostrovsky AN, Paulay G, Porter JS, Shunatova NN, Smith AM, Souto-Derungs J, Vieira LM, Voje KL, Waeschenbach A, Zágoršek K, Warnock RCM, Liow LH.

Sci Adv. 2022 Apr;8(13):eabm7452. doi: 10.1126/sciadv.abm7452. Epub 2022 Mar 30.

PMID: 35353568

Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean.

Carlson MCG, Ribalet F, Maidanik I, Durham BP, Hulata Y, Ferrón S, Weissenbach J, Shamir N, Goldin S, Baran N, Cael BB, Karl DM, White AE, Armbrust EV, Lindell D.

Nat Microbiol. 2022 Apr;7(4):570-580. doi: 10.1038/s41564-022-01088-x. Epub 2022 Apr 1.

PMID: 35365792