UFGI Publication Round-up: Week of 3/25/24

UFGI Publication Round-up: Week of 3/25/24


SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.

Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A.

Nat Methods. 2024 Mar 20. doi: 10.1038/s41592-024-02229-2. Online ahead of print.

PMID: 38509328

Parallel evolution of gravity sensing.

Romanova DY, Moroz LL.

Front Cell Dev Biol. 2024 Mar 7;12:1346032. doi: 10.3389/fcell.2024.1346032. eCollection 2024.

PMID: 38516131

Research summary of poster presentations at the 2023 Florida cardio-oncology symposium.

Bruno KA, O’Dell WG, Tantawy M, Casson CL, Ferrall-Fairbanks MC, DeRemer DL, Dungan JR, Nguyen BL, Roumi NH, Shabnaz S, Smuder AJ, Vilaro MJ, Norton N, Fairweather D, Gong Y.

Am Heart J Plus. 2023 Nov 25;37:100348. doi: 10.1016/j.ahjo.2023.100348. eCollection 2024 Jan.

PMID: 38510509

Examining preharvest genetic and morphological factors contributing to lettuce (Lactuca sativa L.) shelf-life.

Chase K, Belisle C, Ahlawat Y, Yu F, Sargent S, Sandoya G, Begcy K, Liu T.

Sci Rep. 2024 Mar 19;14(1):6618. doi: 10.1038/s41598-024-55037-1.

PMID: 38503783

Multiplexed Immunofluorescence and Single-Molecule RNA Fluorescence In Situ Hybridization in Mouse Skeletal Myofibers.

Denes LT, Kelley CP, Wang ET.

Methods Mol Biol. 2024;2784:163-176. doi: 10.1007/978-1-0716-3766-1_11.

PMID: 38502485

Kenneth I. Berns, MD, PhD [1938-2024].

Byrne BJ, Flotte TR, Herzog RW, Srivastava A.

Hum Gene Ther. 2024 Mar;35(5-6):133-134. doi: 10.1089/hum.2024.29266.kib.

PMID: 38497910

Proteome-scale tissue mapping using mass spectrometry based on label-free and multiplexed workflows.

Kwon Y, Woo J, Yu F, Williams SM, Markillie LM, Moore RJ, Nakayasu ES, Chen J, Campbell-Thompson M, Mathews CE, Nesvizhskii AI, Qia WJ, Zhu Y.

bioRxiv [Preprint]. 2024 Mar 4:2024.03.04.583367. doi: 10.1101/2024.03.04.583367.

PMID: 38496682

Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature.

Carvalho APS, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT, Hoshizaki S, Hsu YF, Kizhakke AG, Kunte K, Martins DJ, Mega NO, Morinaka S, Peggie D, Romanowski HP, Sáfián S, Vila R, Wang H, Braby MF, Espeland M, Breinholt JW, Pierce NE, Kawahara AY, Lohman DJ.

iScience. 2024 Feb 28;27(4):109336. doi: 10.1016/j.isci.2024.109336. eCollection 2024 Apr 19.

PMID: 38500827

Genomic diversity in the endosymbiotic bacteria of human head lice.

Boyd BM, House N, Carduck CW, Reed DL.

Mol Biol Evol. 2024 Mar 21:msae064. doi: 10.1093/molbev/msae064. Online ahead of print.

PMID: 38513084


An antigen-specific immunotherapeutic, AKS-107, deletes insulin-specific B cells and prevents murine autoimmune diabetes.

Alleva DG, Delpero AR, Sathiyaseelan T, Murikipudi S, Lancaster TM, Atkinson MA, Wasserfall CH, Yu L, Ragupathy R, Bonami RH, Zion TC.

Front Immunol. 2024 Mar 7;15:1367514. doi: 10.3389/fimmu.2024.1367514. eCollection 2024.

PMID: 38515750

Molecular editing of NSC-666719 enabling discovery of benzodithiazinedioxide-guanidines as anticancer agents.

Krishna Rao V, Paul S, Gulkis M, Shen Z, Nair H, Singh A, Li C, Sharma AK, Çağlayan M, Das C, Das B, Kundu CN, Narayan S, Guchhait SK.

RSC Med Chem. 2024 Jan 30;15(3):937-962. doi: 10.1039/d3md00648d. eCollection 2024 Mar 20.

PMID: 38516586

Diet-induced metabolic and immune impairments are sex-specifically modulated by soluble TNF signaling in the 5xFAD mouse model of Alzheimer’s disease.

De Sousa Rodrigues ME, Bolen ML, Blackmer-Raynolds L, Schwartz N, Chang J, Tansey MG, Sampson TR.

bioRxiv [Preprint]. 2024 Feb 28:2024.02.28.582516. doi: 10.1101/2024.02.28.582516.

PMID: 38464096

SOCS3 regulates pathological retinal angiogenesis through modulating SPP1 expression in microglia and macrophages.

Wang T, Kaneko S, Kriukov E, Alvarez D, Lam E, Wang Y, La Manna S, Marasco D, Fernandez-Gonzalez A, Mitsialis SA, Kourembanas S, Stahl A, Chen M, Xu H, Baranov P, Cai G, von Andrian UH, Sun Y.

Mol Ther. 2024 Mar 18:S1525-0016(24)00166-7. doi: 10.1016/j.ymthe.2024.03.025. Online ahead of print.

PMID: 38504518

 

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