UFGI Publication Round-up: Week of 12/4/23

Nguyen DT, Liu R, Ogando-Rivas E, Pepe A, Pedro D, Qdaisat S, Nguyen NTY, Lavrador JM, Golde GR, Smolchek RA, Ligon J, Jin L, Tao H, Webber A, Phillpot S, Mitchell DA, Sayour EJ, Huang J, Castillo P, Gregory Sawyer W.

Acta Biomater. 2023 Dec;172:466-479. doi: 10.1016/j.actbio.2023.09.042. Epub 2023 Oct 1.

PMID: 37788737

Identifying locally actionable strategies to increase participant acceptability and feasibility to participate in Phase I cancer clinical trials.

Staras SAS, Wollney EN, Emerson LE, Silver N, Dziegielewski PT, Hansen MD, Sanchez G, D’Ingeo D, Johnson-Mallard V, Renne R, Fredenburg K, Gutter M, Zamojski K, Vandeweerd C, Bylund CL.

Health Expect. 2023 Dec 2. doi: 10.1111/hex.13920. Online ahead of print.

PMID: 38041447

Chemical cognition: chemoconnectomics and convergent evolution of integrative systems in animals.

Moroz LL, Romanova DY.

Anim Cogn. 2023 Nov 28. doi: 10.1007/s10071-023-01833-7. Online ahead of print.

PMID: 38015282

Development of capsid- and genome-modified optimized AAVrh74 vectors for muscle gene therapy.

Shoti J, Qing K, Keeler GD, Duan D, Byrne BJ, Srivastava A.

Mol Ther Methods Clin Dev. 2023 Nov 2;31:101147. doi: 10.1016/j.omtm.2023.101147. eCollection 2023 Dec 14.

PMID: 38046199

Longitudinal lipidomic signatures of all-cause and CVD mortality in American Indians: findings from the Strong Heart Study.

Miao G, Fiehn O, Malloy KM, Zhang Y, Lee ET, Howard BV, Zhao J.

Geroscience. 2023 Aug;45(4):2669-2687. doi: 10.1007/s11357-023-00793-7. Epub 2023 Apr 13.

PMID: 37055600

Reduced Sensitivity to Fluopyram in Meloidogyne graminis following Long-Term Exposure in Golf Turf.

Kammerer CL, Harmon PF, Crow WT.

J Nematol. 2023 Nov 15;55(1):20230048. doi: 10.2478/jofnem-2023-0048. eCollection 2023 Feb.

PMID: 38026550

Occurrence and toxicity mechanisms of perfluorobutanoic acid (PFBA) and perfluorobutane sulfonic acid (PFBS) in fish.

Ivantsova E, Lu A, Martyniuk CJ.

Chemosphere. 2023 Nov 29:140815. doi: 10.1016/j.chemosphere.2023.140815. Online ahead of print.

PMID: 38040261

Immunotoxicological, histopathological, and ultrastructural effects of waterborne pyrogallol exposure on African catfish (Clariasgariepinus).

Hamed M, Said REM, Soliman HAM, Osman AGM, Martyniuk CJ.

Chemosphere. 2023 Nov 26;349:140792. doi: 10.1016/j.chemosphere.2023.140792. Online ahead of print.

PMID: 38016523

Feasibility of preemptive pharmacogenetic testing and improvement of medication treatment satisfaction among medically underserved patients.

Lteif C, Eddy E, Terrell J, Cavallari LH, Malaty J, Duarte JD.

Clin Transl Sci. 2023 Nov 27. doi: 10.1111/cts.13692. Online ahead of print.

PMID: 38013396

Transcriptome profiling of type VI secretion system core gene tssM mutant of Xanthomonas perforans highlights regulators controlling diverse functions ranging from virulence to metabolism.

Ramamoorthy S, Pena M, Ghosh P, Liao Y-Y, Paret M, Jones JB, Potnis N.

Microbiol Spectr. 2023 Nov 29:e0285223. doi: 10.1128/spectrum.02852-23. Online ahead of print.

PMID: 38018859

Exertional heat stroke causes long-term skeletal muscle epigenetic reprogramming, altered gene expression and impaired satellite cell function in mice.

Murray KO, Brant JO, Spradlin RA, Thome T, Laitano O, Ryan TE, Riva A, Kladde MP, Clanton TL.

Am J Physiol Regul Integr Comp Physiol. 2023 Dec 4. doi: 10.1152/ajpregu.00226.2023. Online ahead of print.

PMID: 38047316

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders.

Rancati S, Nicora G, Prosperi M, Bellazzi R, Marini S, Salemi M.

bioRxiv. 2023 Oct 24:2023.10.24.563721. doi: 10.1101/2023.10.24.563721. Preprint.

PMID: 37961168

HDAC8-mediated inhibition of EP300 drives a transcriptional state that increases melanoma brain metastasis.

Emmons MF, Bennett RL, Riva A, Gupta K, Carvalho LADC, Zhang C, Macaulay R, Dupéré-Richér D, Fang B, Seto E, Koomen JM, Li J, Chen YA, Forsyth PA, Licht JD, Smalley KSM.

Nat Commun. 2023 Nov 29;14(1):7759. doi: 10.1038/s41467-023-43519-1.

PMID: 38030596

GENERALIST: A latent space based generative model for protein sequence families.

Akl H, Emison B, Zhao X, Mondal A, Perez A, Dixit PD.

PLoS Comput Biol. 2023 Nov 27;19(11):e1011655. doi: 10.1371/journal.pcbi.1011655. Online ahead of print.

PMID: 38011273

Progranulin and GPNMB: interactions in endo-lysosome function and inflammation in neurodegenerative disease.

Gillett DA, Wallings RL, Uriarte Huarte O, Tansey MG.

J Neuroinflammation. 2023 Nov 30;20(1):286. doi: 10.1186/s12974-023-02965-w.

PMID: 38037070

ASO-mediated knockdown or kinase inhibition of G2019S-Lrrk2 modulates lysosomal tubule-associated antigen presentation in macrophages.

Wallings RL, Mark JR, Staley HA, Gillett DA, Neighbarger N, Kordasiewicz H, Hirst WD, Tansey MG.

Mol Ther Nucleic Acids. 2023 Oct 20;34:102064. doi: 10.1016/j.omtn.2023.102064. eCollection 2023 Dec 12.

PMID: 38028198

Postpartum Chylothorax: A Case Report and Review of the Literature.

Moguillansky N, Ataya A.

Cureus. 2023 Oct 27;15(10):e47839. doi: 10.7759/cureus.47839. eCollection 2023 Oct.

PMID: 38021837

Migraine and major depression: localizing shared genetic susceptibility in different cell types of the nervous systems.

Androulakis XM, Yu X, Zhu X, Thiam MA, Cai G.

Front Neurol. 2023 Nov 15;14:1254290. doi: 10.3389/fneur.2023.1254290. eCollection 2023.

PMID: 38033772

Experimental procedures for flow cytometry of wild-type mouse brain: a systematic review.

Sharp RC, Guenther DT, Farrer MJ.

Front Immunol. 2023 Oct 30;14:1281705. doi: 10.3389/fimmu.2023.1281705. eCollection 2023.

PMID: 38022545

DNAJC12 in Monoamine Metabolism, Neurodevelopment, and Neurodegeneration.

Deng IB, Follett J, Bu M, Farrer MJ.

Mov Disord. 2023 Nov 28. doi: 10.1002/mds.29677. Online ahead of print.

PMID: 38014588

Longitudinal single-cell transcriptional dynamics throughout neurodegeneration in SCA1.

Tejwani L, Ravindra NG, Lee C, Cheng Y, Nguyen B, Luttik K, Ni L, Zhang S, Morrison LM, Gionco J, Xiang Y, Yoon J, Ro H, Haidery F, Grijalva RM, Bae E, Kim K, Martuscello RT, Orr HT, Zoghbi HY, McLoughlin HS, Ranum LPW, Shakkottai VG, Faust PL, Wang S, van Dijk D, Lim J.

Neuron. 2023 Nov 16:S0896-6273(23)00844-9. doi: 10.1016/j.neuron.2023.10.039. Online ahead of print.

PMID: 38016472