UFGI Publication Round-up: Week of 11/27/23

Martinez Pastor M, Sakrikar S, Hwang S, Hackley RK, Soborowski AL, Maupin-Furlow JA, Schmid AK.

Nucleic Acids Res. 2023 Nov 22:gkad997. doi: 10.1093/nar/gkad997. Online ahead of print.

PMID: 37994787

In vivo and in silico toxicity assessment of four common liquid crystal monomers to Daphnia magna: Novel endocrine disrupting chemicals in crustaceans?

He S, He J, Wu F, Zhao Y, Jin X, Martyniuk CJ.

Sci Total Environ. 2023 Nov 24:168757. doi: 10.1016/j.scitotenv.2023.168757. Online ahead of print.

PMID: 38008309

Neurotoxicity of the Cu(OH)₂ Nanopesticide through Perturbing Multiple Neurotransmitter Pathways in Developing Zebrafish.

Chen S, Qin Y, Ye X, Liu J, Yan X, Zhou L, Wang X, Martyniuk CJ, Yan B.

Environ Sci Technol. 2023 Nov 21. doi: 10.1021/acs.est.3c06284. Online ahead of print.

PMID: 37988762

Evidence for neurotoxicity and oxidative stress in zebrafish embryos/larvae treated with HFPO-DA ammonium salt (GenX).

Ivantsova E, Lopez-Scarim V, Sultan A, English C, Biju A, Souders CL 2nd, Padillo-Anthemides NE, Konig I, Martyniuk CJ.

Environ Toxicol Pharmacol. 2023 Nov 18:104315. doi: 10.1016/j.etap.2023.104315. Online ahead of print.

PMID: 37984673

A viral lncRNA tethers HSV-1 genomes at the nuclear periphery to establish viral latency.

Grams TR, Edwards TG, Bloom DC.

J Virol. 2023 Nov 22:e0143823. doi: 10.1128/jvi.01438-23. Online ahead of print.

PMID: 37991364

author Correction: A global biodiversity observing system to unite monitoring and guide action.

Gonzalez A, Vihervaara P, Balvanera P, Bates AE, Bayraktarov E, Bellingham PJ, Bruder A, Campbell J, Catchen MD, Cavender-Bares J, Chase J, Coops N, Costello MJ, Czúcz B, Delavaud A, Dornelas M, Dubois G, Duffy EJ, Eggermont H, Fernandez M, Fernandez N, Ferrier S, Geller GN, Gill M, Gravel D, Guerra CA, Guralnick R, Harfoot M, Hirsch T, Hoban S, Hughes AC, Hugo W, Hunter ME, Isbell F, Jetz W, Juergens N, Kissling WD, Krug CB, Kullberg P, Le Bras Y, Leung B, Londoño-Murcia MC, Lord JM, Loreau M, Luers A, Ma K, MacDonald AJ, Maes J, McGeoch M, Mihoub JB, Millette KL, Molnar Z, Montes E, Mori AS, Muller-Karger FE, Muraoka H, Nakaoka M, Navarro L, Newbold T, Niamir A, Obura D, O’Connor M, Paganini M, Pelletier D, Pereira H, Poisot T, Pollock LJ, Purvis A, Radulovici A, Rocchini D, Roeoesli C, Schaepman M, Schaepman-Strub G, Schmeller DS, Schmiedel U, Schneider FD, Shakya MM, Skidmore A, Skowno AL, Takeuchi Y, Tuanmu MN, Turak E, Turner W, Urban MC, Urbina-Cardona N, Valbuena R, Van de Putte A, van Havre B, Wingate VR, Wright E, Torrelio CZ.

Nat Ecol Evol. 2023 Nov 20. doi: 10.1038/s41559-023-02263-x. Online ahead of print.

PMID: 37985899

Hybkit: a Python API and command-line toolkit for hybrid sequence data from chimeric RNA methods.

Stribling D, Gay LA, Renne R.

Bioinformatics. 2023 Nov 25:btad721. doi: 10.1093/bioinformatics/btad721. Online ahead of print.

PMID: 38006335

Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty.

Howerton E, Contamin L, Mullany LC, Qin M, Reich NG, Bents S, Borchering RK, Jung SM, Loo SL, Smith CP, Levander J, Kerr J, Espino J, van Panhuis WG, Hochheiser H, Galanti M, Yamana T, Pei S, Shaman J, Rainwater-Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Kaminsky J, Hulse JD, Lee EC, McKee CD, Hill A, Karlen D, Chinazzi M, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Rosenstrom ET, Ivy JS, Mayorga ME, Swann JL, España G, Cavany S, Moore S, Perkins A, Hladish T, Pillai A, Ben Toh K, Longini I Jr, Chen S, Paul R, Janies D, Thill JC, Bouchnita A, Bi K, Lachmann M, Fox SJ, Meyers LA, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Cadwell BL, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Truelove S, Runge MC, Shea K, Viboud C, Lessler J.

Nat Commun. 2023 Nov 20;14(1):7260. doi: 10.1038/s41467-023-42680-x.

PMID: 37985664

Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae).

Yoo MJ, Koh J, Boatwright JL, Soltis DE, Soltis PS, Barbazuk WB, Chen S.

Plant J. 2023 Nov 23. doi: 10.1111/tpj.16553. Online ahead of print.

PMID: 37997015

Bringing CAM photosynthesis to the table: paving the way for resilient and productive agricultural systems in a changing climate.

Perron N, Kirst M, Chen S.

Plant Commun. 2023 Nov 20:100772. doi: 10.1016/j.xplc.2023.100772. Online ahead of print.

PMID: 37990498

Two Putative Pheromone Receptors, but Not Their Cognate Pheromones, Regulate Female Fertility in the Atypical Mating Fungus Colletotrichum fructicola.

Yao L, Kong Y, Yang W, Tian H, Meng X, Zhao X, Zhang R, Sun G, Rollins JA, Liang X.

Phytopathology. 2023 Oct;113(10):1934-1945. doi: 10.1094/PHYTO-11-22-0436-R. Epub 2023 Nov 10.

PMID: 37141175

Rational Design of AAV-rh74, AAV3B, and AAV8 with Limited Liver Targeting.

Chan C, Harris KK, Zolotukhin S, Keeler GD.

Viruses. 2023 Oct 28;15(11):2168. doi: 10.3390/v15112168.

PMID: 38005848

Novel magnesium-copper hybrid nanomaterials for management of bacterial spot of tomato.

Choudhary M, Liao YY, Huang Z, Pereira J, Santra S, Parajuli A, Da Silva S, Jones JB, Freeman JH, Paret ML.

Plant Dis. 2023 Nov 21. doi: 10.1094/PDIS-09-23-1776-RE. Online ahead of print.

PMID: 37990522

Digital Phenotyping Reveals Phenotype Diversity and Epistasis among White Spotting Alleles in the American Paint Horse.

Gossett CL, Guyer D, Hein J, Brooks SA.

Genes (Basel). 2023 Oct 27;14(11):2011. doi: 10.3390/genes14112011.

PMID: 38002953

Thrombotic microangiopathy following systemic AAV administration is dependent on anti-capsid antibodies.

Salabarria SM, Corti M, Coleman KE, Wichman MB, Berthy JA, D’Souza P, Tifft CJ, Herzog RW, Elder ME, Shoemaker LR, Leon-Astudillo C, Tavakkoli F, Kirn DH, Schwartz JD, Byrne BJ.

J Clin Invest. 2023 Nov 21:e173510. doi: 10.1172/JCI173510. Online ahead of print.

PMID: 37988172

Fiber type traps: revisiting common misconceptions about skeletal muscle fiber types with application to motor control, biomechanics, physiology, and biology.

Blemker SS, Brooks SV, Esser KA, Saul KR.

J Appl Physiol (1985). 2023 Nov 23. doi: 10.1152/japplphysiol.00337.2023. Online ahead of print.

PMID: 37994416