UFGI Publication Round-Up: Week of 1/20/2025

Harvey C, Nowak A, Zhang S, Moll T, Weimer AK, Barcons AM, Souza CDS, Ferraiuolo L, Kenna K, Zaitlen N, Caggiano C, Shaw PJ, Snyder MP, Mill J, Hannon E, Cooper-Knock J.

BMC Med Genomics. 2025 Jan 14;18(1):10. doi: 10.1186/s12920-025-02084-w.

PMID: 39810183

Phylogenomics, reticulation, and biogeographical history of Elaeagnaceae.

Gu W, Zhang T, Liu SY, Tian Q, Yang CX, Lu Q, Fu XG, Kates HR, Stull GW, Soltis PS, Soltis DE, Folk RA, Guralnick RP, Li DZ, Yi TS.

Plant Divers. 2024 Jul 18;46(6):683-697. doi: 10.1016/j.pld.2024.07.001. eCollection 2024 Nov.

PMID: 39811808

Informing etiological heterogeneity of mild cognitive impairment and risk for progression to dementia with plasma p-tau217.

Asken BM, Cid REC, Crocco EA, Armstrong MJ, Levy SA, Arias F, Rosselli M, Uribe IV, Barker WW, Matusz EF, DeSimone JC, Wang WE, Fiala J, Marsiske MM, DeKosky ST, Vaillancourt DE, Duara R, Loewenstein DA, Smith GE.

J Prev Alzheimers Dis. 2025 Jan;12(1):100011. doi: 10.1016/j.tjpad.2024.100011. Epub 2025 Jan 1.

PMID: 39800468

Nonselective beta blockade enhances gut microbiome diversity in a rodent model of trauma, hemorrhage, and chronic stress.

Munley JA, Kelly LS, Park G, Pons EE, Apple CG, Kannan KB, Bible LE, Efron PA, Nagpal R, Mohr AM; Gainesville, Florida.

J Trauma Acute Care Surg. 2024 Nov 13. doi: 10.1097/TA.0000000000004461. Online ahead of print.

PMID: 39813154

Medicaid and the Promise for Cure.

Miller SC, Dar MH, Finnell SME, Fish DG, Cogle CR.

JAMA Pediatr. 2025 Jan 13. doi: 10.1001/jamapediatrics.2024.5100. Online ahead of print.

PMID: 39804636

Peripheral blood immune cells from individuals with Parkinson’s disease or inflammatory bowel disease share deficits in iron storage and transport that are modulated by non-steroidal anti-inflammatory drugs.

Bolen ML, Gomes BN, Gill B, Menees KB, Staley H, Jernigan J, McFarland NR, Zimmermann EM, Forsmark CE, Tansey MG.

Neurobiol Dis. 2025 Jan 11:106794. doi: 10.1016/j.nbd.2025.106794. Online ahead of print.

PMID: 39805368

Peripherally administered TNF inhibitor is not protective against α-synuclein-induced dopaminergic neuronal death in rats.

Christiansen JR, Ferreira SA, Szymkowski DE, Jakobsson J, Tansey MG, Romero-Ramos M.

Neurobiol Dis. 2025 Jan 10:106803. doi: 10.1016/j.nbd.2025.106803. Online ahead of print.

PMID: 39800228

METTL7A improves bovine IVF embryo competence by attenuating oxidative stress.

Zhu L, Ming H, Scatolin GN, Xiao A, Jiang Z.

bioRxiv [Preprint]. 2024 Dec 17:2024.12.17.628915. doi: 10.1101/2024.12.17.628915.

PMID: 39763908

Establishment of bovine extraembryonic endoderm cells.

Ming H, Scatolin GN, Ojeda A, Jiang Z.

bioRxiv [Preprint]. 2024 Dec 17:2024.12.17.628911. doi: 10.1101/2024.12.17.628911.

PMID: 39763779

Replication stress increases de novo CNVs across the malaria parasite genome.

Brown N, Luniewski A, Yu X, Warthan M, Liu S, Zulawinska J, Ahmad S, Congdon M, Santos W, Xiao F, Guler JL.

bioRxiv [Preprint]. 2024 Dec 31:2024.12.19.629492. doi: 10.1101/2024.12.19.629492.

PMID: 39803504

Phosphorylated-tau associates with HSV-1 chromatin and correlates with nuclear speckles decondensation in low-density host chromatin regions.

D’Aiuto L, Caldwell JK, Edwards TG, Zhou C, McDonald ML, Di Maio R, Joel WA, Hyde VR, Wallace CT, Watkins SC, Wesesky MA, Shemesh OA, Nimgaonkar VL, Bloom DC.

Neurobiol Dis. 2025 Jan 14:106804. doi: 10.1016/j.nbd.2025.106804. Online ahead of print.

PMID: 39818277

Rapid radiation of a plant lineage sheds light on the assembly of dry valley biomes.

Chen YP, Sunojkumar P, Spicer RA, Hodel RGJ, Soltis DE, Soltis PS, Paton AJ, Sun M, Drew BT, Xiang CL.

Mol Biol Evol. 2025 Jan 17:msaf011. doi: 10.1093/molbev/msaf011. Online ahead of print.

PMID: 39823311

Disparities in Clinical Outcomes Observed Within Electronic Health Record Data From a Statewide Cohort of Pulmonary Arterial Hypertension Patients.

Dalton R, Desai AA, Jiao T, Duarte JD.

Pulm Circ. 2025 Jan 13;15(1):e70041. doi: 10.1002/pul2.70041. eCollection 2025 Jan.

PMID: 39811577

Outcome-guided Bayesian clustering for disease subtype discovery using high-dimensional transcriptomic data.

Meng L, Huo Z.

J Appl Stat. 2024 Jun 7;52(1):183-207. doi: 10.1080/02664763.2024.2362275. eCollection 2025.

PMID: 39811087

Polyphenols as a strategy for improving male reproductive system.

Zubair M, Partyka A, Martyniuk CJ.

Mol Biol Rep. 2025 Jan 17;52(1):132. doi: 10.1007/s11033-025-10240-9.

PMID: 39825186

A Senescent Cluster in Aged Human Hematopoietic Stem Cell Compartment as Target for Senotherapy.

Poisa-Beiro L, Landry JJM, Yan B, Kardorff M, Eckstein V, Villacorta L, Krammer PH, Zaugg J, Gavin AC, Benes V, Zhou D, Raffel S, Ho AD.

Int J Mol Sci. 2025 Jan 17;26(2):787. doi: 10.3390/ijms26020787.

PMID: 39859500

Sex dimorphism in the mouse bone marrow niche regulates hematopoietic engraftment via sex-specific Kdm5c/Cxcl12 signaling.

Cui X, Hou L, Yan B, Liu J, Zhang C, Sui P, Tong S, Luchsinger L, Mendelson A, Zhou D, Yang FC, Zhong H, Liang Y.

J Clin Invest. 2025 Jan 21:e182125. doi: 10.1172/JCI182125. Online ahead of print.

PMID: 39836478

Exploring the Intersection of Gender Diversity and Intellectual Disability: A Scoping Review With a Focus on Clinical Care.

Sternberg KF, Cloutier JG, Ahlers K, Moore C, Koth KA, Soda T, Malhi NK, Verma S, Yeh LC, McLaren JL.

J Appl Res Intellect Disabil. 2025 Jan;38(1):e70010. doi: 10.1111/jar.70010.

PMID: 39844579

Corrigendum to “Functional connectivity within sensorimotor cortical and striatal regions is regulated by sepsis in a sex-dependent manner” [NeuroImage 305 (2025) 120995].

Vo Q, Simon ZD, Park G, Nacionales DC, Gorski C, Barrios EL, Casadesus G, Efron PA, Moldawer LL, Nagpal R, Chakrabarty P, Febo M.

Neuroimage. 2025 Jan 18:121025. doi: 10.1016/j.neuroimage.2025.121025. Online ahead of print.

PMID: 39828487

HapCNV: A Comprehensive Framework for CNV Detection in Low-input DNA Sequencing Data.

Yu X, Qin F, Liu S, Brown NJ, Lu Q, Cai G, Guler JL, Xiao F.

bioRxiv [Preprint]. 2025 Jan 7:2024.12.19.629494. doi: 10.1101/2024.12.19.629494.

PMID: 39763944

The Inhibitory Effects of Alpha 1 Antitrypsin on Endosomal TLR Signaling Pathways.

Elshikha AS, Abboud G, Avdiaj R, Morel L, Song S.

Biomolecules. 2025 Jan 1;15(1):43. doi: 10.3390/biom15010043.

PMID: 39858436

Corrigendum: Cipaglucosidase alfa plus miglustat: linking mechanism of action to clinical outcomes in late-onset Pompe disease.

Byrne BJ, Parenti G, Schoser B, van der Ploeg AT, Do H, Fox B, Goldman M, Johnson FK, Kang J, Mehta N, Mondick J, Sheikh MO, Sitaraman Das S, Tuske S, Brudvig J, Weimer JM, Mozaffar T.

Front Neurol. 2025 Jan 3;15:1540452. doi: 10.3389/fneur.2024.1540452. eCollection 2024.

PMID: 39830206

Genomics yields biological and phenotypic insights into bipolar disorder.

O’Connell KS, Koromina M, van der Veen T, Boltz T, David FS, Yang JMK, Lin KH, Wang X, Coleman JRI, Mitchell BL, McGrouther CC, Rangan AV, Lind PA, Koch E, Harder A, Parker N, Bendl J, Adorjan K, Agerbo E, Albani D, Alemany S, Alliey-Rodriguez N, Als TD, Andlauer TFM, Antoniou A, Ask H, Bass N, Bauer M, Beins EC, Bigdeli TB, Pedersen CB, Boks MP, Børte S, Bosch R, Brum M, Brumpton BM, Brunkhorst-Kanaan N, Budde M, Bybjerg-Grauholm J, Byerley W, Cabana-Domínguez J, Cairns MJ, Carpiniello B, Casas M, Cervantes P, Chatzinakos C, Chen HC, Clarence T, Clarke TK, Claus I, Coombes B, Corfield EC, Cruceanu C, Cuellar-Barboza A, Czerski PM, Dafnas K, Dale AM, Dalkner N, Degenhardt F, DePaulo JR, Djurovic S, Drange OK, Escott-Price V, Fanous AH, Fellendorf FT, Ferrier IN, Forty L, Frank J, Frei O, Freimer NB, Fullard JF, Garnham J, Gizer IR, Gordon SD, Gordon-Smith K, Greenwood TA, Grove J, Guzman-Parra J, Ha TH, Hahn T, Haraldsson M, Hautzinger M, Havdahl A, Heilbronner U, Hellgren D, Herms S, Hickie IB, Hoffmann P, Holmans PA, Huang MC, Ikeda M, Jamain S, Johnson JS, Jonsson L, Kalman JL, Kamatani Y, Kennedy JL, Kim E, Kim J, Kittel-Schneider S, Knowles JA, Kogevinas M, Kranz TM, Krebs K, Kushner SA, Lavebratt C, Lawrence J, Leber M, Lee HJ, Liao C, Lucae S, Lundberg M, MacIntyre DJ, Maier W, Maihofer AX, Malaspina D, Manchia M, Maratou E, Martinsson L, Mattheisen M, McGregor NW, McInnis MG, McKay JD, Medeiros H, Meyer-Lindenberg A, Millischer V, Morris DW, Moutsatsou P, Mühleisen TW, O’Donovan C, Olsen CM, Panagiotaropoulou G, Papiol S, Pardiñas AF, Park HY, Perry A, Pfennig A, Pisanu C, Potash JB, Quested D, Rapaport MH, Regeer EJ, Rice JP, Rivera M, Schulte EC, Senner F, Shadrin A, Shilling PD, Sigurdsson E, Sindermann L, Sirignano L, Siskind D, Slaney C, Sloofman LG, Smeland OB, Smith DJ, Sobell JL, Soler Artigas M, Stein DJ, Stein F, Su MH, Sung H, Świątkowska B, Terao C, Tesfaye M, Tesli M, Thorgeirsson TE, Thorp JG, Toma C, Tondo L, Tooney PA, Tsai SJ, Tsermpini EE, Vawter MP, Vedder H, Vreeker A, Walters JTR, Winsvold BS, Witt SH, Won HH, Ye R, Young AH, Zandi PP, Zillich L; 23andMe Research Team; Adolfsson R, Alda M, Alfredsson L, Backlund L, Baune BT, Bellivier F, Bengesser S, Berrettini WH, Biernacka JM, Boehnke M, Børglum AD, Breen G, Carr VJ, Catts S, Cichon S, Corvin A, Craddock N, Dannlowski U, Dikeos D, Etain B, Ferentinos P, Frye M, Fullerton JM, Gawlik M, Gershon ES, Goes FS, Green MJ, Grigoroiu-Serbanescu M, Hauser J, Henskens FA, Hjerling-Leffler J, Hougaard DM, Hveem K, Iwata N, Jones I, Jones LA, Kahn RS, Kelsoe JR, Kircher T, Kirov G, Kuo PH, Landén M, Leboyer M, Li QS, Lissowska J, Lochner C, Loughland C, Luykx JJ, Martin NG, Mathews CA, Mayoral F, McElroy SL, McIntosh AM, McMahon FJ, Medland SE, Melle I, Milani L, Mitchell PB, Morken G, Mors O, Mortensen PB, Müller-Myhsok B, Myers RM, Myung W, Neale BM, Nievergelt CM, Nordentoft M, Nöthen MM, Nurnberger JI, O’Donovan MC, Oedegaard KJ, Olsson T, Owen MJ, Paciga SA, Pantelis C, Pato CN, Pato MT, Patrinos GP, Pawlak JM, Ramos-Quiroga JA, Reif A, Reininghaus EZ, Ribasés M, Rietschel M, Ripke S, Rouleau GA, Roussos P, Saito T, Schall U, Schalling M, Schofield PR, Schulze TG, Scott LJ, Scott RJ, Serretti A, Smoller JW, Squassina A, Stahl EA, Stefansson H, Stefansson K, Stordal E, Streit F, Sullivan PF, Turecki G, Vaaler AE, Vieta E, Vincent JB, Waldman ID, Weickert CS, Weickert TW, Werge T, Whiteman DC, Zwart JA, Edenberg HJ, McQuillin A, Forstner AJ, Mullins N, Di Florio A, Ophoff RA, Andreassen OA; Bipolar Disorder Working Group of the Psychiatric Genomics Consortium.

Nature. 2025 Jan 22. doi: 10.1038/s41586-024-08468-9. Online ahead of print.

PMID: 39843750

TFII-I/GTF2I regulates globin gene expression and stress response in erythroid cells.

Nar R, Gibbons MD, Perez L, Strouboulis J, Qian Z, Bungert J.

J Biol Chem. 2025 Jan 24:108227. doi: 10.1016/j.jbc.2025.108227. Online ahead of print.

PMID: 39864622

What Matters Most for Long-Acting Antiretroviral Therapy? A Best-Worst Scaling Discrete Choice Experiment.

Fisk-Hoffman RJ, Liu Y, Somboonwit C, Widmeyer M, Bilello LA, Cohen C, Leeman RF, Prosperi M, Salloum RG, Cook RL.

J Acquir Immune Defic Syndr. 2025 Jan 21. doi: 10.1097/QAI.0000000000003609. Online ahead of print.

PMID: 39834007

Associations of Concordant and Shared Lung Cancer Screening Decision Making with Decisional Conflict: A Multi-Institution Cross-Sectional Analysis.

Sullivan DR, Golden SE, Schweiger L, Melzer AC, Datta S, Davis JM, Wiener RS, Slatore CG.

MDM Policy Pract. 2025 Jan 17;10(1):23814683241309945. doi: 10.1177/23814683241309945. eCollection 2025 Jan-Jun.

PMID: 39839686

Long-term dynamics of placozoan culture: emerging models for population and space biology.

Romanova DY, Povernov AA, Nikitin MA, Borman SI, Frank YA, Moroz LL.

Front Cell Dev Biol. 2025 Jan 8;12:1514553. doi: 10.3389/fcell.2024.1514553. eCollection 2024.

PMID: 39845085

The ancestral architecture of the immune system in simplest animals.

Romanova DY, Moroz LL.

Front Immunol. 2025 Jan 7;15:1529836. doi: 10.3389/fimmu.2024.1529836. eCollection 2024.

PMID: 39840034

Design and early progress of the Comparison of Anticoagulation and anti-Platelet Therapies for Intracranial Vascular Atherostenosis (CAPTIVA) trial.

Hoh BL, Martin RH, Yeatts SD, Turan TN, Boyette RM, McLaren S, Butler L, Peters KR, Smith J, Cavallari LH, Wabnitz AM, Sabagha N, Unger C, Frasure JS, Broderick JP, Chimowitz MI.

Int J Stroke. 2025 Jan 25:17474930241313301. doi: 10.1177/17474930241313301. Online ahead of print.

PMID: 39862061