UFGI Publication Round-Up: Week of 1/13/2025

Li H, Zeng J, Snyder MP, Zhang S.

Genome Res. 2025 Jan 6. doi: 10.1101/gr.279694.124. Online ahead of print.

PMID: 39562137

Cerebral cortical functional hyperconnectivity in a mouse model of spinocerebellar ataxia type 8 (SCA8).

Nietz AK, Popa LS, Carter RE, Gerhart ML, Manikonda K, Ranum LPW, Ebner TJ.

Neurobiol Dis. 2025 Jan 7:106795. doi: 10.1016/j.nbd.2025.106795. Online ahead of print.

PMID: 39788161

A Sorghum BAK1/SERK4 Homolog Functions in PAMP-Triggered Immunity and Cell Death in Response to Colletotrichum sublineola Infection.

Vela S, Wolf ESA, Zhou M, Davis A, Mou Z, Cuevas HE, Vermerris W.

Phytopathology. 2025 Jan 6. doi: 10.1094/PHYTO-09-24-0283-R. Online ahead of print.

PMID: 39761500

Environmental Exposure to Per- and Polyfluorylalkyl Substances (PFASs) and Reproductive Outcomes in the General Population: A Systematic Review of Epidemiological Studies.

Haimbaugh A, Meyer DN, Connell ML, Blount-Pacheco J, Tolofari D, Gonzalez G, Banerjee D, Norton J, Miller CJ, Baker TR.

Int J Environ Res Public Health. 2024 Dec 2;21(12):1615. doi: 10.3390/ijerph21121615.

PMID: 39767456

A Screen of Traditional Chinese Medicinal Plant Extracts Reveals 17 Species with Antimicrobial Properties.

Ellward GL, Binda ME, Dzurny DI, Bucher MJ, Dees WR, Czyż DM.

Antibiotics (Basel). 2024 Dec 17;13(12):1220. doi: 10.3390/antibiotics13121220.

PMID: 39766610

Deletion of metal transporter Zip14 reduces major histocompatibility complex II expression in murine small intestinal epithelial cells.

Jimenez-Rondan FR, Ruggiero CH, Riva A, Yu F, Stafford LS, Cross TR, Larkin J 3rd, Cousins RJ.

Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2422321121. doi: 10.1073/pnas.2422321121. Epub 2024 Dec 30.

PMID: 39793074

Multi-omics integration and immune profiling identify possible causal networks leading to uterine microbiome dysbiosis in dairy cows that develop metritis.

Casaro S, Prim JG, Gonzalez TD, Cunha F, Silva ACM, Yu H, Bisinotto RS, Chebel RC, Santos JEP, Nelson CD, Jeon SJ, Bicalho RC, Driver JP, Galvão KN.

Anim Microbiome. 2025 Jan 9;7(1):4. doi: 10.1186/s42523-024-00366-9.

PMID: 39789616

AI-assisted Digital Video Analysis Reveals Changes in Gait Among Three-Day Event Horses During Competition.

Smythe MP, Dewberry LS, Staiger EA, Allen K, Brooks SA.

J Equine Vet Sci. 2025 Jan 6:105344. doi: 10.1016/j.jevs.2025.105344. Online ahead of print.

PMID: 39778726

BETA CELL DYSFUNCTION OCCURS INDEPENDENTLY OF INSULITIS IN TYPE 1 DIABETES PATHOGENESIS.

Huber MK, Widener AE, Cuaycal AE, Smurlick D, Butterworth EA, Lenchik NI, Chen J, Beery M, Hiller H, Verney E, Kusmartseva I, Rupnik MS, Campbell-Thompson M, Gerling IC, Atkinson MA, Mathews CE, Phelps EA.

bioRxiv [Preprint]. 2024 Dec 29:2024.12.29.630665. doi: 10.1101/2024.12.29.630665.

PMID: 39763971

Association of Computed Tomography Scan-Assessed Body Composition with Immune and PI3K/AKT Pathway Proteins in Distinct Breast Cancer Tumor Components.

Cheng TD, Fu DA, Falzarano SM, Zhang R, Datta S, Zhang W, Omilian AR, Aduse-Poku L, Bian J, Irianto J, Asirvatham JR, Campbell-Thompson M.

Int J Mol Sci. 2024 Dec 14;25(24):13428. doi: 10.3390/ijms252413428.

PMID: 39769193

QOMIC: quantum optimization for motif identification.

Ngo HM, Khatib T, Thai MT, Kahveci T.

Bioinform Adv. 2024 Dec 24;5(1):vbae208. doi: 10.1093/bioadv/vbae208. eCollection 2025.

PMID: 39801778

QOMIC: quantum optimization for motif identification.

Ngo HM, Khatib T, Thai MT, Kahveci T.

Bioinform Adv. 2024 Dec 24;5(1):vbae208. doi: 10.1093/bioadv/vbae208. eCollection 2025.

PMID: 39801778

QOMIC: quantum optimization for motif identification.

Ngo HM, Khatib T, Thai MT, Kahveci T.

Bioinform Adv. 2024 Dec 24;5(1):vbae208. doi: 10.1093/bioadv/vbae208. eCollection 2025.

PMID: 39801778

Genomic data reveal that the Cuban blue-headed quail-dove (Starnoenas cyanocephala) is a biogeographic relict.

Oswald JA, Boyd BM, Szewczak AR, LeFebvre MJ, Stucky BJ, Guralnick RP, Johnson KP, Allen JM, Steadman DW.

Biol Lett. 2025 Jan;21(1):20240464. doi: 10.1098/rsbl.2024.0464. Epub 2025 Jan 8.

PMID: 39772915

Genomic re-sequencing reveals mutational divergence across genetically engineered strains of model archaea.

Soborowski AL, Hackley RK, Hwang S, Zhou G, Dulmage KA, Schönheit P, Daniels C, Bisson-Filho AW, Marchfelder A, Maupin-Furlow JA, Allers T, Schmid AK.

mSystems. 2025 Jan 10:e0108424. doi: 10.1128/msystems.01084-24. Online ahead of print.

PMID: 39791890

Neonatal systemic gene therapy restores cardiorespiratory function in a rat model of Pompe disease.

Fuller DD, Rana S, Thakre P, Benevides E, Pope M, Todd AG, Jensen VN, Vaught L, Cloutier D, Ribas RA, Larson RC, Gentry MS, Sun RC, Chandran V, Corti M, Falk DJ, Byrne BJ.

bioRxiv [Preprint]. 2024 Dec 16:2024.12.10.627800. doi: 10.1101/2024.12.10.627800.

PMID: 39763722

Low Prevalence of SARS-CoV-2 in Farmed and Free-Ranging White-Tailed Deer in Florida.

Grace SG, Wilson KN, Dorleans R, White ZS, Pu R, Gaudreault NN, Cool K, Campos Krauer JM, Franklin LE, Clemons BC, Subramaniam K, Richt JA, Lednicky JA, Long MT, Wisely SM.

Viruses. 2024 Dec 6;16(12):1886. doi: 10.3390/v16121886.

PMID: 39772194

Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients.

Pickering H, Schaenman J, Phan HV, Maguire C, Tsitsiklis A, Rouphael N, Higuita NIA, Atkinson MA, Brakenridge S, Fung M, Messer W; IMPACC Network; Salehi-Rad R, Altman MC, Becker PM, Bosinger SE, Eckalbar W, Hoch A, Doni Jayavelu N, Kim-Schulze S, Jenkins M, Kleinstein SH, Krammer F, Maecker HT, Ozonoff A, Diray-Arce J, Shaw A, Baden L, Levy O, Reed EF, Langelier CR.

Nat Commun. 2025 Jan 10;16(1):586. doi: 10.1038/s41467-025-55823-z.

PMID: 39794319

Relationships between activity monitoring device data and ovarian, uterine, hormonal, and pregnancy variables in beef cows.

Rocha CC, Montevecchio AB, Bennett A, Waheed A, Mazziotta M, Maia TS, Haimon ML, Hoorn QA, Sagheer M, Cuellar CJ, Ojeda-Rojas OA, Krisher RL, Rubessa M, Pohler KG, Hansen PJ, Moriel P, Chebel RC, Binelli M.

Theriogenology. 2025 Jan 6;235:64-74. doi: 10.1016/j.theriogenology.2025.01.001. Online ahead of print.

PMID: 39793472

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification.

Fruchard L, Babosan A, Carvalho A, Lang M, Li B, Duchateau M, Giai Gianetto Q, Matondo M, Bonhomme F, Hatin I, Arbes H, Fabret C, Corler E, Sanchez G, Marchand V, Motorin Y, Namy O, de Crécy-Lagard V, Mazel D, Baharoglu Z.

Elife. 2025 Jan 6;13:RP96317. doi: 10.7554/eLife.96317.

PMID: 39761105