UFGI Publication Round-up: Week 7/20/20

Beitelshees AL, Stevenson JM, El Rouby N, Dillon C, Empey PE, Fielstein EM, Johnson JA, Limdi NA, Ong HH, Franchi F, Angiolillo DP, Peterson JF, Rosenman MB, Skaar TC, Tuteja S, Cavallari LH; IGNITE Pharmacogenetics Working Group.

Genet Med. 2020 Jul 17. doi: 10.1038/s41436-020-0894-2. [Epub ahead of print]

PMID: 32678355

Na ₂ CO ₃-responsive Photosynthetic and ROS Scavenging Mechanisms in Chloroplasts of Alkaligrass Revealed by Phosphoproteomics

Suo J, Zhang H, Zhao Q, Zhang N, Zhang Y, Li Y, Song B, Yu J, Cao J, Wang T, Luo J, Guo L, Ma J, Zhang X, She Y, Peng L, Ma W, Guo S, Miao Y, Chen S, Qin Z, Dai S.

Genomics Proteomics Bioinformatics. 2020 Jul 16. pii: S1672-0229(20)30090-5. doi: 10.1016/j.gpb.2018.10.011. [Epub ahead of print]

PMID: 32683046

Identification of Unique mRNA and miRNA Expression Patterns in Bone Marrow Hematopoietic Stem and Progenitor Cells After Trauma in Older Adults.

Darden DB, Stortz JA, Hollen MK, Cox MC, Apple CG, Hawkins RB, Rincon JC, Lopez MC, Wang Z, Navarro E, Hagen JE, Parvataneni HK, Brusko MA, Kladde M, Bacher R, Brumback BA, Brakenridge SC, Baker HV, Cogle CR, Mohr AM, Efron PA.

Front Immunol. 2020 Jun 24;11:1289. doi: 10.3389/fimmu.2020.01289. eCollection 2020.

PMID: 32670283

Evaluation of Microbiome-Host Relationships in the Zebrafish Gastrointestinal System Reveals Adaptive Immunity Is a Target of Bis(2-ethylhexyl) Phthalate (DEHP) Exposure.

Adamovsky O, Buerger AN, Vespalcova H, Sohag SR, Hanlon AT, Ginn PE, Craft SL, Smatana S, Budinska E, Persico M, Bisesi JH Jr, Martyniuk CJ.

Environ Sci Technol. 2020 May 5;54(9):5719-5728. doi: 10.1021/acs.est.0c00628. Epub 2020 Apr 21.

PMID: 32255618

Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids.

Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP.

Am J Bot. 2020 Jun;107(6):895-909. doi: 10.1002/ajb2.1479. Epub 2020 Jun 9.

PMID: 32519354
Development of a Clinical Candidate AAV3 Vector for Gene Therapy of Hemophilia B.

Brown HC, Doering CB, Herzog R, Ling C, Markusic DM, Spencer HT, Srivastava A, Srivastava A.

Hum Gene Ther. 2020 Jul 12. doi: 10.1089/hum.2020.099. [Epub ahead of print]

PMID: 32657150

Metabogenomics reveals four candidate regions involved in the pathophysiology of Equine Metabolic Syndrome.

Rosa LP, Mallicote MF, Long MT, Brooks SA.

Mol Cell Probes. 2020 Jul 10:101620. doi: 10.1016/j.mcp.2020.101620. [Epub ahead of print]

PMID: 32659253

Draft Genome Sequences of Plant-Pathogenic Klebsiella variicola Strains Isolated from Plantain in Haiti.

Fulton JC, Klein JM, Bec S, Fayette J, Garrett KA, Jones JB, Timilsina S, Harmon CL.

Microbiol Resour Announc. 2020 Jul 16;9(29). pii: e00336-20. doi: 10.1128/MRA.00336-20.

PMID: 32675179

Attach Me If You Can: Murine Norovirus Binds to Commensal Bacteria and Fungi.

Madrigal JL, Bhar S, Hackett S, Engelken H, Joseph R, Keyhani NO, Jones MK.

Viruses. 2020 Jul 14;12(7). pii: E759. doi: 10.3390/v12070759.

PMID: 32674489

High efficiency transformation and mutant screening of the laurel wilt pathogen, Raffaelea lauricola.

Zhou Y, Lu D, Joseph R, Li T, Keyhani NO.

Appl Microbiol Biotechnol. 2020 Jul 12. doi: 10.1007/s00253-020-10762-1. [Epub ahead of print]

PMID: 32656617

Gel-free genotyping of deletion alleles in Caenorhabditis elegans with real-time PCR

Wimberly K, Choe KP.

MicroPubl Biol. 2020 Jul 11;2020. doi: 10.17912/micropub.biology.000274. No abstract available.

PMID: 32666047

Co-evolution of AAV capsid antigenicity and tropism through a structure-guided approach.

Havlik LP, Simon KE, Smith JK, Klinc KA, Tse LV, Oh DK, Fanous MM, Meganck RM, Mietzsch M, Agbandje-McKenna M, Asokan A.

J Virol. 2020 Jul 15. pii: JVI.00976-20. doi: 10.1128/JVI.00976-20. [Epub ahead of print]

PMID: 32669336

A draft genome of Steinernema diaprepesi

Baniya A, Huguet-Tapia JC, DiGennaro P.

J Nematol. 2020;52:1-4. doi: 10.21307/jofnem-2020-069.

PMID: 32678527

Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research.

Pearson KD, Nelson G, Aronson MFJ, Bonnet P, Brenskelle L, Davis CC, Denny EG, Ellwood ER, Goëau H, Heberling JM, Joly A, Lorieul T, Mazer SJ, Meineke EK, Stucky BJ, Sweeney P, White AE, Soltis PS.

Bioscience. 2020 Jul 1;70(6):610-620. doi: 10.1093/biosci/biaa044. Epub 2020 May 13.

PMID: 32665738

Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases.

Cook JA, Arai S, Armién B, Bates J, Bonilla CAC, Cortez MBS, Dunnum JL, Ferguson AW, Johnson KM, Khan FAA, Paul DL, Reeder DM, Revelez MA, Simmons NB, Thiers BM, Thompson CW, Upham NS, Vanhove MPM, Webala PW, Weksler M, Yanagihara R, Soltis PS.

Bioscience. 2020 Jul 1;70(6):531-534. doi: 10.1093/biosci/biaa064. Epub 2020 Jun 24. No abstract available.

PMID: 32665736

Genetics and Signaling Pathways of Laminitis.

Galantino-Homer H, Brooks SA.

Vet Clin North Am Equine Pract. 2020 Aug;36(2):379-394. doi: 10.1016/j.cveq.2020.04.001. Review.

PMID: 32654786

Precision Health Analytics With Predictive Analytics and Implementation Research: JACC State-of-the-Art Review.

Pearson TA, Califf RM, Roper R, Engelgau MM, Khoury MJ, Alcantara C, Blakely C, Boyce CA, Brown M, Croxton TL, Fenton K, Green Parker MC, Hamilton A, Helmchen L, Hsu LL, Kent DM, Kind A, Kravitz J, Papanicolaou GJ, Prosperi M, Quinn M, Price LN, Shireman PK, Smith SM, Szczesniak R, Goff DC Jr, Mensah GA.

J Am Coll Cardiol. 2020 Jul 21;76(3):306-320. doi: 10.1016/j.jacc.2020.05.043. Review.

PMID: 32674794

Elucidating mechanisms of immunotoxicity by benzotriazole ultraviolet stabilizers in zebrafish (Danio rerio): Implication of the AHR-IL17/IL22 immune pathway.

Li Z, Liang X, Liu W, Zhao Y, Yang H, Li W, Adamovsky O, Martyniuk CJ.

Environ Pollut. 2020 Jul;262:114291. doi: 10.1016/j.envpol.2020.114291. Epub 2020 Feb 28.

PMID: 32146360

Interactive thyroid whole slide image diagnostic system using deep representation.

Chen P, Shi X, Liang Y, Li Y, Yang L, Gader PD.

Comput Methods Programs Biomed. 2020 Jun 27;195:105630. doi: 10.1016/j.cmpb.2020.105630. [Epub ahead of print]

PMID: 32634647

Foxa1 and Foxa2 orchestrate development of the urethral tube and division of the embryonic cloaca through an autoregulatory loop with Shh.

Gredler ML, Patterson SE, Seifert AW, Cohn MJ.

Dev Biol. 2020 Jul 6. pii: S0012-1606(20)30184-6. doi: 10.1016/j.ydbio.2020.06.009. [Epub ahead of print]

PMID: 32645357

PhotoGal4: A Versatile Light-Dependent Switch for Spatiotemporal Control of Gene Expression in Drosophila Explants.

de Mena L, Rincon-Limas DE.

iScience. 2020 Jun 23;23(7):101308. doi: 10.1016/j.isci.2020.101308. [Epub ahead of print]

PMID: 32652492