UFGI Publication Round-up: Week 6/29/20

Persistently increased cell-free DNA concentrations only modestly contribute to outcome and host response in sepsis survivors with chronic critical illness.

Hawkins RB, Stortz JA, Holden DC, Wang Z, Raymond SL, Cox MC, Brakenridge SC, Moore FA, Moldawer LL, Efron PA.

Surgery. 2020 Mar;167(3):646-652. doi: 10.1016/j.surg.2019.11.018. Epub 2019 Dec 31.

PMID: 31898953

 

Delayed interhospital transfer of critically ill patients with surgical sepsis.

Loftus TJ, Wu Q, Wang Z, Lysak N, Moore FA, Bihorac A, Efron PA, Mohr AM, Brakenridge SC.

J Trauma Acute Care Surg. 2020 Jan;88(1):169-175. doi: 10.1097/TA.0000000000002476.

PMID: 31856021

 

CRISPR-dCas9-mediated knockdown of prtR, an essential gene in Pseudomonas aeruginosa.

Xiang L, Qi F, Jiang L, Tan J, Deng C, Wei Z, Jin S, Huang G.

Lett Appl Microbiol. 2020 Jun 7. doi: 10.1111/lam.13337. [Epub ahead of print]

PMID: 32506497

 

Blunted fat oxidation upon submaximal exercise is partially compensated by enhanced glucose metabolism in children, adolescents, and young adults with Barth syndrome.

Cade WT, Bohnert KL, Peterson LR, Patterson BW, Bittel AJ, Okunade AL, de Las Fuentes L, Steger-May K, Bashir A, Schweitzer GG, Chacko SK, Wanders RJ, Pacak CA, Byrne BJ, Reeds DN.

J Inherit Metab Dis. 2019 May;42(3):480-493. doi: 10.1002/jimd.12094. Epub 2019 Apr 11.

PMID: 30924938

 

Adeno-Associated Virus (AAV) Capsid Stability and Liposome Remodeling During Endo/Lysosomal pH Trafficking.

Lins-Austin B, Patel S, Mietzsch M, Brooke D, Bennett A, Venkatakrishnan B, Van Vliet K, Smith AN, Long JR, McKenna R, Potter M, Byrne B, Boye SL, Bothner B, Heilbronn R, Agbandje-McKenna M.

Viruses. 2020 Jun 20;12(6). pii: E668. doi: 10.3390/v12060668.

PMID: 32575696

 

G Protein-Coupled Estrogen Receptor: Rapid Effects on Hippocampal-Dependent Spatial Memory and Synaptic Plasticity.

Kumar A, Foster TC.

Front Endocrinol (Lausanne). 2020 Jun 10;11:385. doi: 10.3389/fendo.2020.00385. eCollection 2020.

PMID: 32587576

 

Canine heartworm and heat treatment: An evaluation using a well based enzyme-linked immunosorbent assay (ELISA) and canine sera with confirmed heartworm infection status.

Gruntmeir JM, Long MT, Blagburn BL, Walden HS.

Vet Parasitol. 2020 Jun 20;283:109169. doi: 10.1016/j.vetpar.2020.109169. [Epub ahead of print]

PMID: 32593059

 

Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life science education.

Ryder EF, Morgan WR, Sierk M, Donovan SS, Robertson SD, Orndorf HC, Rosenwald AG, Triplett EW, Dinsdale E, Pauley MA, Tapprich WE.

Biochem Mol Biol Educ. 2020 Jun 25. doi: 10.1002/bmb.21387. [Epub ahead of print]

PMID: 32585745

 

Multiplexing DNA methylation markers to detect circulating cell-free DNA derived from human pancreatic beta-cells.

Neiman D, Gillis D, Piyanzin S, Cohen D, Fridlich O, Moss J, Zick A, Oron T, Sundberg F, Forsander G, Skog O, Korsgren O, Levy-Khademi F, Arbell D, Hashavya S, Shapiro AMJ, Speake C, Greenbaum C, Hosford J, Posgai A, Atkinson MA, Glaser B, Schatz D, Shemer R, Dor Y.

JCI Insight. 2020 Jun 23. pii: 136579. doi: 10.1172/jci.insight.136579. [Epub ahead of print]

PMID: 32573495

 

Identification of proteins associated with two diverse Caulobacter phicbkvirus particles.

Wilson K, Zhu F, Zheng R, Chen S, Ely B.

Arch Virol. 2020 Jun 25. doi: 10.1007/s00705-020-04707-2. [Epub ahead of print]

PMID: 32588241

 

Adaptive Transcriptional Responses by CRTC Coactivators in Cancer.

Tasoulas J, Rodon L, Kaye FJ, Montminy M, Amelio AL.

Trends Cancer. 2019 Feb;5(2):111-127. doi: 10.1016/j.trecan.2018.12.002. Epub 2019 Jan 29. Review.

PMID: 30755304

 

Wet-chemical etching of FIB lift-out TEM lamellae for damage-free analysis of 3-D nanostructures.

Turner EM, Sapkota KR, Hatem C, Lu P, Wang GT, Jones KS.

Ultramicroscopy. 2020 Jun 17;216:113049. doi: 10.1016/j.ultramic.2020.113049. [Epub ahead of print]

PMID: 32593126

 

Neurotoxicity assessment of triazole fungicides on mitochondrial oxidative respiration and lipids in differentiated human SH-SY5Y neuroblastoma cells.

Sanchez CL, Souders CL 2nd, Delgado CJP, Nguyen KT, Kroyter N, Ahmadie NE, Aristizabal-Henao JJ, Bowden JA, Martyniuk CJ.

Neurotoxicology. 2020 Jun 22. pii: S0161-813X(20)30096-6. doi: 10.1016/j.neuro.2020.06.009. [Epub ahead of print]

PMID: 32585290

 

Prospective Validation of a Transcriptomic Metric in Severe Trauma.

Raymond SL, Hawkins RB, Wang Z, Mira JC, Stortz JA, Han F, Lanz JD, Hennessy LV, Brumback BA, Baker HV, Efron PA, Brakenridge SC, Xiao W, Tompkins RG, Cuschieri J, Moore FA, Maier RV, Moldawer LL.

Ann Surg. 2020 May;271(5):802-810. doi: 10.1097/SLA.0000000000003204. No abstract available.

PMID: 30688688

 

Mechanism of manganese dysregulation of dopamine neuronal activity.

Lin M, Colon-Perez LM, Sambo DO, Miller DR, Lebowitz JJ, Jimenez-Rondan F, Cousins RJ, Horenstein N, Aydemir TB, Febo M, Khoshbouei H.

J Neurosci. 2020 Jun 23. pii: JN-RM-2830-19. doi: 10.1523/JNEUROSCI.2830-19.2020. [Epub ahead of print]

PMID: 32576620

 

Reconstruction of Wassel IV-D radial polydactyly with a boot-shaped neurovascular island flap: A Consecutive series of 91 thumbs.

Shen XF, Yin F, Wang J, Zhang X, Xue MY, Chim H, Rui YJ.

J Plast Reconstr Aesthet Surg. 2020 May 26. pii: S1748-6815(20)30254-0. doi: 10.1016/j.bjps.2020.05.071. [Epub ahead of print]

PMID: 32565137

 

Diabrotica Undecimpunctata Virus 2, a Novel Small RNA Virus Discovered From Southern Corn Rootworm, Diabrotica Undecimpunctata howardiBarber (Coleoptera: Chrysomelidae)

Liu S, Valencia-Jiménez A, Darlington M, Vélez AM, Bonning BC.

Microbiol Resour Announc. 2020 Jun 25;9(26). pii: e00380-20. doi: 10.1128/MRA.00380-20.

PMID: 32586858

 

The Genetic Regulation of Alternative Splicing in Populus deltoides

Noble JD, Balmant KM, Dervinis C, de Los Campos G, Resende MFR Jr, Kirst M, Barbazuk WB.

Front Plant Sci. 2020 Jun 5;11:590. doi: 10.3389/fpls.2020.00590. eCollection 2020.

PMID: 32582229

 

Comparative Genomics of the Genus RoseburiaReveals Divergent Biosynthetic Pathways That May Influence Colonic Competition Among Species

Hillman ET, Kozik AJ, Hooker CA, Burnett JL, Heo Y, Kiesel VA, Nevins CJ, Oshiro JMKI, Robins MM, Thakkar RD, Wu ST, Lindemann SR.

Microb Genom. 2020 Jun 26. doi: 10.1099/mgen.0.000399. [Epub ahead of print]

PMID: 32589566

 

Geometry of the nuclear envelope determines its flexural stiffness.

Agrawal A, Lele TP.

Mol Biol Cell. 2020 Jun 25:mbcE20020163. doi: 10.1091/mbc.E20-02-0163. [Epub ahead of print]

PMID: 32583742