UFGI Publication round-up week 1/14/19

Cavallari LH, Beitelshees AL, Blake KV, Dressler LG, Duarte JD, Elsey A, Eichmeyer JN, Empey PE, Franciosi JP, Hicks JK, Holmes AM, Jeng L, Lee CR, Lima JJ, Limdi NA, Modlin J, Obeng AO, Petry N, Pratt VM, Skaar TC, Tuteja S, Voora D, Wagner M, Weitzel KW, Wilke RA, Peterson JF, Johnson JA.

Clin Transl Sci. 2017 May;10(3):143-146. doi: 10.1111/cts.12456. Epub 2017 Mar 14. Review. No abstract available.

PMID: 28294551

Cetuximab-associated pulmonary toxicity in concurrent chemoradiation for the treatment of a squamous cell carcinoma of the head and neck.

Mayfield JD, Mercado CE, Kaye FJ, Mendenhall WM.

Head Neck. 2019 Jan 5. doi: 10.1002/hed.25528. [Epub ahead of print]

PMID: 30614125

Viral Enrichment Methods Affect the Detection but Not Sequence Variation of West Nile Virus in Equine Brain Tissue.

Prakoso D, Dark MJ, Barbet AF, Salemi M, Barr KL, Liu JJ, Wenzlow N, Waltzek TB, Long MT.

Front Vet Sci. 2018 Dec 18;5:318. doi: 10.3389/fvets.2018.00318. eCollection 2018.

PMID: 30619900

Use of principle component analysis to quantitatively score the equine metabolic syndrome phenotype in an Arabian horse population.

Lewis SL, Holl HM, Long MT, Mallicote MF, Brooks SA.

PLoS One. 2018 Jul 12;13(7):e0200583. doi: 10.1371/journal.pone.0200583. eCollection 2018.

PMID: 30001422

A data-driven and practice-based approach to identify risk factors associated with hospital-acquired falls: Applying manual and semi- and fully-automated methods.

Lucero RJ, Lindberg DS, Fehlberg EA, Bjarnadottir RI, Li Y, Cimiotti JP, Crane M, Prosperi M.

Int J Med Inform. 2019 Feb;122:63-69. doi: 10.1016/j.ijmedinf.2018.11.006. Epub 2018 Nov 27.

PMID: 30623785

Facile approach to prepare HSA-templated MnO2 nanosheets as oxidase mimic for colorimetric detection of glutathione.

Ge J, Cai R, Chen X, Wu Q, Zhang L, Jiang Y, Cui C, Wan S, Tan W.

Talanta. 2019 Apr 1;195:40-45. doi: 10.1016/j.talanta.2018.11.024. Epub 2018 Nov 10.

PMID: 30625560

Enhancement of Heat Stability and Kinetic Parameters of the Maize Endosperm ADP-Glucose Pyrophosphorylase by Mutagenesis of Amino Acids in the Small Subunit With High B Factors.

Boehlein SK, Shaw JR, Hannah LC.

Front Plant Sci. 2018 Dec 12;9:1849. doi: 10.3389/fpls.2018.01849. eCollection 2018.

PMID: 30619417

IL-35 (Interleukin-35) Suppresses Endothelial Cell Activation by Inhibiting Mitochondrial Reactive Oxygen Species-Mediated Site-Specific Acetylation of H3K14 (Histone 3 Lysine 14).

Li X, Shao Y, Sha X, Fang P, Kuo YM, Andrews AJ, Li Y, Yang WY, Maddaloni M, Pascual DW, Luo JJ, Jiang X, Wang H, Yang X.

Arterioscler Thromb Vasc Biol. 2018 Mar;38(3):599-609. doi: 10.1161/ATVBAHA.117.310626. Epub 2018 Jan 25.

PMID: 29371247

Perfluorooctane sulfonate affects intestinal immunity against bacterial infection.

Suo C, Fan Z, Zhou L, Qiu J.

Sci Rep. 2017 Jul 12;7(1):5166. doi: 10.1038/s41598-017-04091-z.

PMID: 28701769

Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq.

Armstrong E, Iriarte A, Nicolini P, De Los Santos J, Ithurralde J, Bielli A, Bianchi G, Peñagaricano F.

PLoS One. 2018 Jul 24;13(7):e0200732. doi: 10.1371/journal.pone.0200732. eCollection 2018.

PMID: 30040835

Intracellular Signaling by the comRS System in Streptococcus mutans Genetic Competence.

Underhill SAM, Shields RC, Kaspar JR, Haider M, Burne RA, Hagen SJ.

mSphere. 2018 Oct 31;3(5). pii: e00444-18. doi: 10.1128/mSphere.00444-18.

PMID: 30381353

The quantitative measure and statistical distribution of fame.

Ramirez ED, Hagen SJ.

PLoS One. 2018 Jul 6;13(7):e0200196. doi: 10.1371/journal.pone.0200196. eCollection 2018.

PMID: 29979792

Near-infrared fluorescent northern blot.

Miller BR, Wei T, Fields CJ, Sheng P, Xie M.

RNA. 2018 Dec;24(12):1871-1877. doi: 10.1261/rna.068213.118. Epub 2018 Sep 10.

PMID: 30201850

Decoding the intensity of sensory input by two glutamate receptors in one C. elegans interneuron.

Zou W, Fu J, Zhang H, Du K, Huang W, Yu J, Li S, Fan Y, Baylis HA, Gao S, Xiao R, Ji W, Kang L, Xu T.

Nat Commun. 2018 Oct 17;9(1):4311. doi: 10.1038/s41467-018-06819-5.

PMID: 30333484

Female C57BL/6J mice lacking the circadian clock protein PER1 are protected from nondipping hypertension.

Douma LG, Solocinski K, Holzworth MR, Crislip GR, Masten SH, Miller AH, Cheng KY, Lynch IJ, Cain BD, Wingo CS, Gumz ML.

Am J Physiol Regul Integr Comp Physiol. 2019 Jan 1;316(1):R50-R58. doi: 10.1152/ajpregu.00381.2017. Epub 2018 Nov 14.

PMID: 30427705

Nuclear genomes of two magnoliids.

Soltis DE, Soltis PS.

Nat Plants. 2019 Jan;5(1):6-7. doi: 10.1038/s41477-018-0344-1. No abstract available.

PMID: 30626927

Neural System and Receptor Diversity in the Ctenophore Beroe abyssicola.

Norekian TP, Moroz LL.

J Comp Neurol. 2019 Jan 11. doi: 10.1002/cne.24633. [Epub ahead of print]

PMID: 30632608

TBX3 and ASIP genotypes reveal discrepancies in officially recorded coat colors of Hucul horses.

Mackowski M, Wodas L, Brooks SA, Cieslak J.

Animal. 2019 Jan 7:1-6. doi: 10.1017/S1751731118003506. [Epub ahead of print]

PMID: 30614426

Transcription alterations of KCNQ1 associated with imprinted methylation defects in the Beckwith-Wiedemann locus.

Valente FM, Sparago A, Freschi A, Hill-Harfe K, Maas SM, Frints SGM, Alders M, Pignata L, Franzese M, Angelini C, Carli D, Mussa A, Gazzin A, Gabbarini F, Acurzio B, Ferrero GB, Bliek J, Williams CA, Riccio A, Cerrato F.

Genet Med. 2019 Jan 12. doi: 10.1038/s41436-018-0416-7. [Epub ahead of print]

PMID: 30635621

Breeding new varieties for controlled environments.

Folta KM.

Plant Biol (Stuttg). 2019 Jan;21 Suppl 1:6-12. doi: 10.1111/plb.12914. Epub 2018 Oct 22. Review.

PMID: 30230154

Shortest path counting in probabilistic biological networks.

Ren Y, Ay A, Kahveci T.

BMC Bioinformatics. 2018 Dec 4;19(1):465. doi: 10.1186/s12859-018-2480-z.

PMID: 30514202

Editorial: Molecular and Cellular Mechanisms of the Legume-Rhizobia Symbiosis.

Wang J, Andersen SU, Ratet P.

Front Plant Sci. 2018 Dec 12;9:1839. doi: 10.3389/fpls.2018.01839. eCollection 2018. No abstract available.

PMID: 30631330

Meta-analysis of the effects of prepartum dietary cation-anion difference on performance and health of dairy cows.

Santos JEP, Lean IJ, Golder H, Block E.

J Dairy Sci. 2019 Jan 3. pii: S0022-0302(19)30003-7. doi: 10.3168/jds.2018-14628. [Epub ahead of print]

PMID: 30612801

Effects of altering the ratio of dietary n-6 to n-3 fatty acids on spontaneous luteolysis in lactating dairy cows.

Greco LF, Neves Neto JT, Pedrico A, Lima FS, Bisinotto RS, Martinez N, Ribeiro ES, Thatcher WW, Staples CR, Santos JEP.

J Dairy Sci. 2018 Nov;101(11):10536-10556. doi: 10.3168/jds.2018-15065. Epub 2018 Sep 7.

PMID: 30197147

Putting phage to work in deubiquitinase ligand discovery.

Maupin-Furlow JA.

J Biol Chem. 2019 Jan 11;294(2):437-438. doi: 10.1074/jbc.H118.006803.

PMID: 30635442

Emergence of Madariaga virus as a cause of acute febrile illness in children, Haiti, 2015-2016.

Lednicky JA, White SK, Mavian CN, El Badry MA, Telisma T, Salemi M, OKech BA, Beau De Rochars VM, Morris JG Jr.

PLoS Negl Trop Dis. 2019 Jan 10;13(1):e0006972. doi: 10.1371/journal.pntd.0006972. eCollection 2019 Jan.

PMID: 30629592

Viral Enrichment Methods Affect the Detection but Not Sequence Variation of West Nile Virus in Equine Brain Tissue.

Prakoso D, Dark MJ, Barbet AF, Salemi M, Barr KL, Liu JJ, Wenzlow N, Waltzek TB, Long MT.

Front Vet Sci. 2018 Dec 18;5:318. doi: 10.3389/fvets.2018.00318. eCollection 2018.

PMID: 30619900

A comparison between whole transcript and 3′ RNA sequencing methods using Kapa and Lexogen library preparation methods.

Ma F, Fuqua BK, Hasin Y, Yukhtman C, Vulpe CD, Lusis AJ, Pellegrini M.

BMC Genomics. 2019 Jan 7;20(1):9. doi: 10.1186/s12864-018-5393-3.

PMID: 30616562

The Epstein Barr virus circRNAome.

Ungerleider N, Concha M, Lin Z, Roberts C, Wang X, Cao S, Baddoo M, Moss WN, Yu Y, Seddon M, Lehman T, Tibbetts S, Renne R, Dong Y, Flemington EK.

PLoS Pathog. 2018 Aug 6;14(8):e1007206. doi: 10.1371/journal.ppat.1007206. eCollection 2018 Aug.

PMID: 30080890

Gammaherpesvirus Readthrough Transcription Generates a Long Non-Coding RNA That Is Regulated by Antisense miRNAs and Correlates with Enhanced Lytic Replication In Vivo.

Kara M, O’Grady T, Feldman ER, Feswick A, Wang Y, Flemington EK, Tibbetts SA.

Noncoding RNA. 2019 Jan 10;5(1). pii: E6. doi: 10.3390/ncrna5010006.

PMID: 30634714

Assembly and disassembly intermediates of maize streak geminivirus.

Bennett A, Rodriguez D, Lister S, Boulton M, McKenna R, Agbandje-McKenna M.

Virology. 2018 Dec;525:224-236. doi: 10.1016/j.virol.2018.09.011. Epub 2018 Oct 6.

PMID: 30300759