UFGI Publication Round-up: Week of 7/15/24

Unraveling the genomic landscape of Campylorhynchus wrens along western Ecuador’s precipitation gradient: Insights into hybridization, isolation by distance, and isolation by the environment.

Montalvo LD, Kimball RT, Austin JD, Robinson SK.

Ecol Evol. 2024 Jul 11;14(7):e11661. doi: 10.1002/ece3.11661. eCollection 2024 Jul.

PMID: 38994212

The distribution and evolutionary dynamics of dopaminergic neurons in molluscs.

Norekian TP, Moroz LL.

bioRxiv [Preprint]. 2024 Jun 30:2024.06.26.600886. doi: 10.1101/2024.06.26.600886.

PMID: 38979169

Identification of candidate single-nucleotide polymorphisms (SNPs) and genes associated with sugarcane leaf scald disease.

Li Y, Lin P, You Q, Huang J, Yao W, Wang J, Zhang M.

Sci Rep. 2024 Jul 13;14(1):16214. doi: 10.1038/s41598-024-67059-w.

PMID: 39003420

Codon-Optimized and de novo-Synthesized E-Selectin/AAV2 Dose-Response Study for Vascular Regeneration Gene Therapy.

Voza FA, Byrne BJ, Ortiz YY, Li Y, Le N, Osafo L, Ribieras AC, Shao H, Huerta CT, Wei Y, Falero-Diaz G, Franco-Bravo A, Lassance-Soares RM, Vazquez-Padron RI, Liu ZJ, Velazquez OC.

Ann Surg. 2024 Jul 8. doi: 10.1097/SLA.0000000000006436. Online ahead of print.

PMID: 38975668

A phylogeny-informed characterisation of global tetrapod traits addresses data gaps and biases.

Moura MR, Ceron K, Guedes JJM, Chen-Zhao R, Sica YV, Hart J, Dorman W, Portmann JM, González-Del-Pliego P, Ranipeta A, Catenazzi A, Werneck FP, Toledo LF, Upham NS, Tonini JFR, Colston TJ, Guralnick R, Bowie RCK, Pyron RA, Jetz W.

PLoS Biol. 2024 Jul 11;22(7):e3002658. doi: 10.1371/journal.pbio.3002658. eCollection 2024 Jul.

PMID: 38991106

Pervasive conservation of intron number and other genetic elements revealed by a chromosome-level genomic assembly of the hyper-polymorphic nematode Caenorhabditis brenneri.

Teterina AA, Willis JH, Baer CF, Phillips PC.

bioRxiv [Preprint]. 2024 Jun 28:2024.06.25.600681. doi: 10.1101/2024.06.25.600681.

PMID: 38979286

Photochemical transformation of liquid crystal monomers in simulated environmental media: Kinetics, mechanism, toxicity variation and QSAR modeling.

Yang Y, Jiang X, Yang Y, Wang J, Zhao Y, Lin S, Qu J, Martyniuk CJ, Zhao Y, Li C.

Water Res. 2024 Jul 8;261:122062. doi: 10.1016/j.watres.2024.122062. Online ahead of print.

PMID: 39002419

A review of the neurobehavioural, physiological, and reproductive toxicity of microplastics in fishes.

Hasan AKMM, Hamed M, Hasan J, Martyniuk CJ, Niyogi S, Chivers DP.

Ecotoxicol Environ Saf. 2024 Jul 12;282:116712. doi: 10.1016/j.ecoenv.2024.116712. Online ahead of print.

PMID: 39002376

Infection and chronic disease activate a systemic brain-muscle signaling axis.

Yang S, Tian M, Dai Y, Wang R, Yamada S, Feng S, Wang Y, Chhangani D, Ou T, Li W, Guo X, McAdow J, Rincon-Limas DE, Yin X, Tai W, Cheng G, Johnson A.

Sci Immunol. 2024 Jul 12;9(97):eadm7908. doi: 10.1126/sciimmunol.adm7908. Epub 2024 Jul 12.

PMID: 38996009

Single-stranded DNA binding protein hitches a ride with the Escherichia coli YoaA-χ helicase.

Weeks-Pollenz SJ, Petrides MJ, Davis R, Harris KK, Bloom LB.

bioRxiv [Preprint]. 2024 Jun 21:2024.06.21.600097. doi: 10.1101/2024.06.21.600097.

PMID: 38948847

CRISPR/Cas9-mediated editing of Bs5 and Bs5L in tomato leads to resistance against Xanthomonas.

Ortega A, Seong K, Schultink A, de Toledo Thomazella DP, Seo E, Zhang E, Pham J, Cho MJ, Dahlbeck D, Warren J, Minsavage GV, Jones JB, Sierra-Orozco E, Hutton SF, Staskawicz B.

Plant Biotechnol J. 2024 Jul 12. doi: 10.1111/pbi.14404. Online ahead of print.

PMID: 39001586

Science is a team sport: citations are how we recognize members of the team.

McIntyre LM.

G3 (Bethesda). 2024 Jul 8;14(7):jkae102. doi: 10.1093/g3journal/jkae102.

PMID: 38975705

Design and Realization of Lung Organoid Cultures for COVID-19 Applications.

Ren B, Chiaravalloti TR, Belony NL, Romero DI, Chai W, Leon C, Wu L, Lamango NS, Offringa IA, Huang Y.

Biodes Manuf. 2023 Nov;6(6):646-660. doi: 10.1007/s42242-023-00255-1. Epub 2023 Oct 3.

PMID: 38993804

One-Week Kava Dietary Supplementation Increases Both Urinary N– and O-Glucuronides of NNAL, a Lung Carcinogen Major Metabolite, among Smokers.

Hu Q, Tang Z, Lynch A, Freeman B, Fujioka N, Salloum RG, Malaty J, Orlando FA, Langaee T, Huo Z, Xing C.

Chem Res Toxicol. 2024 Jul 13. doi: 10.1021/acs.chemrestox.4c00109. Online ahead of print.

PMID: 39001862

SnRK1a1, a new player in the sucrose-Opaque2 network during endosperm filling.

Balmant KM, Resende MFR Jr.

Mol Plant. 2024 Jul 6:S1674-2052(24)00222-3. doi: 10.1016/j.molp.2024.07.003. Online ahead of print.

PMID: 38973160

Association of Body Mass Index and Parkinson Disease: A Bidirectional Mendelian Randomization Study.

Domenighetti C, Sugier PE, Ashok Kumar Sreelatha A, Schulte C, Grover S, Portugal B, Lee PC, May P, Bobbili D, Radivojkov Blagojevic M, Lichtner P, Singleton AB, Hernandez D, Edsall C, Mellick GD, Zimprich AA, Pirker W, Rogaeva EA, Lang AE, Koks S, Taba P, Lesage S, Brice A, Corvol JC, Chartier-Harlin MC, Mutez E, Brockmann K, Deutschlander AB, Hadjigeorgiou GM, Dardiotis E, Stefanis L, Simitsi AM, Valente EM, Petrucci S, Straniero L, Zecchinelli AL, Pezzoli G, Brighina L, Ferrarese C, Annesi G, Quattrone A, Gagliardi M, Matsuo H, Nakayama A, Hattori N, Nishioka K, Chung SJ, Kim YJ, Kolber P, Van De Warrenburg BPC, Bloem BR, Toft M, Pihlstrøm L, Correia Guedes L, Ferreira JJ, Bardien S, Carr J, Tolosa E, Ezquerra M, Pastor P, Diez-Fairen M, Wirdefeldt K, Pedersen NL, Ran C, Belin AC, Puschmann A, Hellberg C, Clarke CE, Morrison KE, Tan MM, Krainc D, Burbulla LF, Farrer M, Kruger R, Gasser T, Sharma M, Elbaz A; Comprehensive Unbiased Risk Factor Assessment for Genetics and Environment in Parkinson’s Disease (COURAGE-PD) Consortium.

Neurology. 2024 Aug 13;103(3):e209620. doi: 10.1212/WNL.0000000000209620. Epub 2024 Jul 10.

PMID: 38986057

Practical management of oral treprostinil in patients with pulmonary arterial hypertension: Lessons from ADAPT, EXPEDITE, and expert consensus.

Brewer J, Wilson M, Coons JC, Schmit A, Whittenhall ME, Kimber A, Broderick M, Lee D, Patzlaff N, Miller C, Ataya A, LaRoy V, King CS, Ravichandran AK, Kingrey JF, Sahay S.

Respir Med. 2024 Jul 8:107734. doi: 10.1016/j.rmed.2024.107734. Online ahead of print.

PMID: 38986791

Cerebral cortical functional hyperconnectivity in a mouse model of spinocerebellar ataxia type 8 (SCA8).

Nietz AK, Popa LS, Carter RE, Gerhart ML, Manikonda K, Ranum LPW, Ebner TJ.

bioRxiv [Preprint]. 2024 Jun 20:2024.06.20.599947. doi: 10.1101/2024.06.20.599947.

PMID: 38948725

Identification of tomato F-box proteins functioning in phenylpropanoid metabolism.

Shin D, Cho KH, Tucker E, Yoo CY, Kim J.

Plant Mol Biol. 2024 Jul 12;114(4):85. doi: 10.1007/s11103-024-01483-4.

PMID: 38995464

Influence of proportion of Brahman genetics on productivity of Brahman-Angus cows at weaning.

Martins T, Rocha CC, Driver JD, Rae O, Elzo MA, Mateescu RG, Santos JEP, Binelli M.

Transl Anim Sci. 2024 Jun 6;8:txae093. doi: 10.1093/tas/txae093. eCollection 2024.

PMID: 38979117

Effect of rumen-protected choline on fat digestibility and lymph metabolome in dairy cows.

Arshad U, Zimpel R, Husnain A, Poindexter MB, Santos JEP.

J Anim Physiol Anim Nutr (Berl). 2024 Jul;108(4):950-964. doi: 10.1111/jpn.13943. Epub 2024 Feb 20.

PMID: 38379267

The timing of pronuclear transfer critically affects the developmental competence and quality of embryos.

Znachorova T, Dudko N, Ming H, Jiang Z, Fulka H.

Mol Hum Reprod. 2024 Jul 11:gaae024. doi: 10.1093/molehr/gaae024. Online ahead of print.

PMID: 38991843

Physiological Adaptations to Progressive Endurance Exercise Training in Adult and Aged Rats: Insights from the Molecular Transducers of Physical Activity Consortium (MoTrPAC).

Schenk S, Sagendorf TJ, Many GM, Lira AK, de Sousa LGO, Bae D, Cicha M, Kramer KS, Muehlbauer M, Hevener AL, Rector RS, Thyfault JP, Williams JP, Goodyear LJ, Esser KA, Newgard CB, Bodine SC; MoTrPAC Study Group.

Function (Oxf). 2024 Jul 11;5(4):zqae014. doi: 10.1093/function/zqae014.

PMID: 38984994

Targeted Protein Degradation: Current and Emerging Approaches for E3 Ligase Deconvolution.

Xiao Y, Yuan Y, Liu Y, Lin Z, Zheng G, Zhou D, Lv D.

J Med Chem. 2024 Jul 9. doi: 10.1021/acs.jmedchem.4c00723. Online ahead of print.

PMID: 38981094

Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana.

Lee G, DiBiase CN, Liu B, Li T, McCoy AG, Chilvers MI, Sun L, Wang D, Lin F, Zhao M.

Plant Genome. 2024 Jul 12:e20487. doi: 10.1002/tpg2.20487. Online ahead of print.

PMID: 39001589

Psychiatric polygenic risk scores: Experience, hope for utility, and concerns among child and adolescent psychiatrists.

Merner AR, Trotter PM, Ginn LA, Bach J, Freedberg KJ, Soda T, Storch EA, Pereira S, Lázaro-Muñoz G.

Psychiatry Res. 2024 Jul 7;339:116080. doi: 10.1016/j.psychres.2024.116080. Online ahead of print.

PMID: 39002500