UFGI Publication Round-up: Week of 10/23/23

Niu S, Alkhuzam KA, Guan D, Jiao T, Shi L, Fonseca V, Laiteerapong N, Ali MK, Schatz DA, Guo J, Shao H.

Diabetes Obes Metab. 2023 Oct 22. doi: 10.1111/dom.15332. Online ahead of print.

PMID: 37867175

Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data.

Jun I, Cohen SA, Ser SE, Marini S, Lucero RJ, Bian J, Prosperi M.

Proc Mach Learn Res. 2023 Aug;218:98-115.

PMID: 37854935

Evaluating the perceptions of pesticide use, safety, and regulation and identifying common pesticide-related topics on Twitter.

Jun I, Feng Z, Avanasi R, Brain RA, Prosperi M, Bian J.

Integr Environ Assess Manag. 2023 Nov;19(6):1581-1599. doi: 10.1002/ieam.4777. Epub 2023 May 12.

PMID: 37070476

Plant Parasitic Nematode Identification in Complex Samples with Deep Learning.

Agarwal S, Curran ZC, Yu G, Mishra S, Baniya A, Bogale M, Hughes K, Salichs O, Zare A, Jiang Z, DiGennaro P.

J Nematol. 2023 Oct 16;55(1):20230045. doi: 10.2478/jofnem-2023-0045. eCollection 2023 Feb.

PMID: 37849469

KSHV 3.0: A State-of-the-Art Annotation of the Kaposi’s Sarcoma-Associated Herpesvirus Transcriptome Using Cross-Platform Sequencing.

Prazsák I, Tombácz D, Fülöp Á, Torma G, Gulyás G, Dörmő Á, Kakuk B, Spires LM, Toth Z, Boldogkői Z.

bioRxiv. 2023 Sep 21:2023.09.21.558842. doi: 10.1101/2023.09.21.558842. Preprint.

PMID: 37790386

Divergent outcomes of genetic conflict on the UV sex chromosomes of Marchantia polymorpha and Ceratodon purpureus.

McDaniel SF.

Curr Opin Genet Dev. 2023 Oct 19;83:102129. doi: 10.1016/j.gde.2023.102129. Online ahead of print.

PMID: 37864936

Biophysics in tumor growth and progression: from single mechano-sensitive molecules to mechanomedicine.

Xin Y, Li K, Huang M, Liang C, Siemann D, Wu L, Tan Y, Tang X.

Oncogene. 2023 Oct 20. doi: 10.1038/s41388-023-02844-x. Online ahead of print.

PMID: 37864030

Structures of LIG1 active site mutants reveal the importance of DNA end rigidity for mismatch discrimination.

Gulkis M, Tang Q, Petrides M, Çağlayan M.

Res Sq. 2023 Apr 12:rs.3.rs-2720903. doi: 10.21203/rs.3.rs-2720903/v1. Preprint.

PMID: 37090517

Equitable machine learning counteracts ancestral bias in precision medicine, improving outcomes for all.

Smith LA, Cahill JA, Graim K.

Res Sq. 2023 Jul 27:rs.3.rs-3168446. doi: 10.21203/rs.3.rs-3168446/v1. Preprint.

PMID: 37546907

Post-Traumatic Pneumonia Exacerbates Bone Marrow Erythropoietic Dysfunction.

Gillies GS, Munley JA, Kelly LS, Kirkpatrick SL, Pons EE, Kannan KB, Bible LE, Efron PA, Mohr AM.

J Trauma Acute Care Surg. 2023 Oct 19. doi: 10.1097/TA.0000000000004157. Online ahead of print.

PMID: 37853556

Loss of Progranulin Results in Increased Pan-Cathepsin Activity and Reduced LAMP1 Lysosomal Protein.

Anderson A, Tansey MG.

bioRxiv. 2023 Jul 16:2023.07.15.549151. doi: 10.1101/2023.07.15.549151. Preprint.

PMID: 37503267

LRRK2 negatively regulates glucose tolerance via regulation of membrane translocation of GLUT4 in adipocytes.

Kawakami F, Imai M, Isaka Y, Cookson MR, Maruyama H, Kubo M, Farrer MJ, Kanzaki M, Kawashima R, Maekawa T, Tamaki S, Kurosaki Y, Kojima F, Ohba K, Ichikawa T.

FEBS Open Bio. 2023 Oct 16. doi: 10.1002/2211-5463.13717. Online ahead of print.

PMID: 37845194

The LRRK2 kinase substrates Rab8a and Rab10 contribute complementary but distinct disease-relevant phenotypes in human neurons.

Mamais A, Sanyal A, Fajfer A, Zykoski CG, Guldin M, Riley-DiPaolo A, Subrahmanian N, Gibbs W, Lin S, LaVoie MJ.

bioRxiv. 2023 Apr 30:2023.04.30.538317. doi: 10.1101/2023.04.30.538317. Preprint.

PMID: 37163109

Access to Prenatal Care Among Patients With Opioid Use Disorder in Florida: Findings From a Secret Shopper Study.

Fryer K, Reid CN, Elmore AL, Mehra S, Carr C, Salemi JL, Cogle CR, Pelletier C, Pacheco Garrillo M, Sappenfield WS, Marshall J.

Obstet Gynecol. 2023 Nov 1;142(5):1162-1168. doi: 10.1097/AOG.0000000000005315. Epub 2023 Aug 10.

PMID: 37856854

Early morning run-training results in enhanced endurance performance adaptations in mice.

Hesketh SJ, Sexton CL, Wolff CA, Viggars MR, Esser KA.

bioRxiv. 2023 Sep 19:2023.09.18.557933. doi: 10.1101/2023.09.18.557933. Preprint.

PMID: 37781623