UFGI Publication Round-Up: 7/6/2026

Ma X, Allison D, Macedo JKA, Bolton KE, Clarke H, Young LEA, Bian J, Neltner JH, Kooi CV, Sun RC, Gentry MS, Chen L.

Comput Struct Biotechnol J. 2026 Jul 9;35(1):0153. doi: 10.34133/csbj.0153. eCollection 2026.

PMID: 42428521

The Vertebrate Genomes Project Phase I: A global reference genome resource.

Formenti G, Absolon DE, Abueg LAL, Ackerman F, Al-Ajli FO, Aleixo A, Antunes A, Arcila D, Audet JN, Balacco JR, Beavan AJS, Belov K, Betancur-R R, Bidwell SL, Biegler MT, Bista I, Blaxter M, Boyer K, Braasch I, Bradbury IR, Brajuka N, Bronikowski AM, Brown T, Butler G, Cao S, Charvel E, Chen Y, Ciofi C, Clawson HM, Collins JC, Correard S, Corrigan S, Couture M, Crawford AJ, D’Alessandre ND, da Conceicao HB, da Fonseca RR, Daigavane M, Dalapicolla J, de Bruyn M, de Jong E, De Panis DN, Detrich HW 3rd, Scott CD, Diekhans M, Duarte E, Durbin R, Escalona M, Eschenbrenner M, Fedrigo O, Fenn J, Flannery P, Forde N, Gable SM, Galante PA, Ganesan R, Gardiner A, Garrison E, Gemmell NJ, Gilbert MTP, Giudicelli F, Gonçalves TM, Guardia GDA, Guarracino A, Gupta A, Haase B, Hays D, Hickey G, Hiller M, Hime PM, Hogg CJ, Horan KM, Howe K, Jackson D, Jain N, Kang L, Kliver S, Ko BJ, Koepfli KP, Komissarov A, Komoroske LM, Koo B, Koren S, Korlach J, Kovacic I, Krasheninnikova K, Kuderna LF, Langlois RA, Lariviere D, Larkin DM, Lee C, Lee YH, Lewin HA, Lim D, Lou RN, Mak SS, Makova KD, Marín-Gual L, Marques-Bonet T, Martin FJ, Mathers TC, Mazzoni CJ, McCaffrey K, McCarthy SA, Medico JA, Mercuri RLV, Meyer A, Michalak P, Mirarab S, Morin PA, Mountcastle J, Murphy RW, Murphy TD, Myers EW, Naylor GJ, Near T, Nekrutenko A, Ning Z, Novak BJ, O’Brien MF, O’Connell MJ, O’Toole BP, Paez S, Paten B, Paulini M, Pelan SE, Pennell M, Pfenning AR, Phillippy AM, Pinto B, Pippel M, Popova M, Prylutskyi M, Rhie A, Crollius HR, Ruiz-Herrera A, Ryder O, Safonova Y, Santos CA, Schatz MC, Secomandi S, Shaffer HB, Shalmiyev L, Shapiro B, Smith JJ, Sollitto M, Sotero-Caio CG, Steiner CC, Sudmant PH, Sweeney DJ, Talbot SC, Taylor CH, Teeling EC, Thibaud-Nissen F, Tilley T, Timoshevskaya N, Traore P, Turakhia Y, Uliano-Silva M, Venditti C, Venkatesh B, Vernes SC, Warren WC, Whelan CV, Wilson MA, Winkler S, Wood JM, Zhang G, Zhao G, Jarvis ED; Vertebrate Genomes Project Consortium Phase I.

bioRxiv [Preprint]. 2026 Jun 25:2026.06.24.732306. doi: 10.64898/2026.06.24.732306.

PMID: 42395566

Adenovirus Infections in Hematologic Malignancy and Hematopoietic Cell Transplant Recipients: Epidemiology, Diagnosis, and Management.

Schoninger S, Jang HM, Lee YJ.

Infect Chemother. 2026 Jun;58(2):137-150. doi: 10.3947/ic.2026.0033.

PMID: 42405537

Genetic divergence in Aedes aegypti mosquitoes potentially associated with enhanced capacity for arbovirus transmission.

Wang X, Bozic J, Tarimo BB, Stenn TMS, McCollum MT, Carrillo J, Buckner EA, Nyasembe VO, Ngasala B, Dinglasan RR, Collier TC, Caragata EP, Lee Y, Mathias DK.

BMC Biol. 2026 Jul 8;24(1):152. doi: 10.1186/s12915-026-02592-w.

PMID: 42415079

Build fair machine learning models to predict adverse outcomes for heart failure patients with preserved ejection fraction and with reduced ejection fraction.

Yeh Y, Lee Y, Huang Y, Huang W, Kimmel SE, Yang C, Jiang Z, Xiao T, Guo Y, Bian J, Guo J.

JAMIA Open. 2026 Jul 10;9(4):ooag136. doi: 10.1093/jamiaopen/ooag136. eCollection 2026 Aug.

PMID: 42434194

Machine Learning With Genetic and Clinical Data to Predict Ischemic Outcomes After PCI.

Grant CW, Ingraham BS, Lennon RJ, Raina A, Tian S, Kowlgi G, Cavallari LH, Lee CR, Beitelshees A, Angiolillo DJ, Franchi F, Duarte JD, Rossi JS, Stouffer GA, Klee E, Gulati R, Rihal C, Farkouh M, Athreya AP, Pereira NL.

Clin Transl Sci. 2026 Jul;19(7):e70655. doi: 10.1111/cts.70655.

PMID: 42427167

PERK deficiency amplifies molecular, structural, and network vulnerability to repetitive mild traumatic brain injury.

Criado-Marrero M, Ravi S, Barroso D, Garza TN, Cuestas Torres DM, Lessard C, Castano JP, Bolen ML, Rubinovich U, Prokop S, Chakrabarty P, Ranum LPW, Febo M, Abisambra JF.

Neurobiol Dis. 2026 Jul 11:107526. doi: 10.1016/j.nbd.2026.107526. Online ahead of print.

PMID: 42435991

New species, hosts, and records of Aporobopyrus Nobili, 1906 (Isopoda: Bopyridae: Pseudioninae).

An J, Zhang Y, Chen X, Paulay G.

Zootaxa. 2026 Apr 8;5787(3):467-484. doi: 10.11646/zootaxa.5787.3.3.

PMID: 42408980

Machine Learning With Genetic and Clinical Data to Predict Ischemic Outcomes After PCI.

Clin Transl Sci. 2026 Jul;19(7):e70655. doi: 10.1111/cts.70655.

PMID: 42427167

Occurrence and toxicity mechanisms of hexafluoropropylene oxide dimer acid (HPFO-DA, GenX) in aquatic species.

Valle EMA, Sultan A, Lu A, Ivantsova E, Martyniuk CJ.

Environ Sci Process Impacts. 2026 Jul 10. doi: 10.1039/d5em00971e. Online ahead of print.

PMID: 42429221

Simulated microgravity with physiological shear reveals endothelial disruption in a dual-stimulus bioreactor.

Pipis N, Garner R, Ludtka C, Allen JB.

NPJ Microgravity. 2026 Jul 11. doi: 10.1038/s41526-026-00627-8. Online ahead of print.

PMID: 42436195

Tissue-specific CTG•CAG expansion rate and disease severity are modified by DNA repair genes expression levels in myotonic dystrophy type 1 patients.

Palma-Jiménez M, Ramirez-Carvajal L, Olafson H, Wang ET, Morales F.

DNA Repair (Amst). 2026 Jul 7;165:103950. doi: 10.1016/j.dnarep.2026.103950. Online ahead of print.

PMID: 42419013

The gut microbiome in early life predicts malaria susceptibility.

Dutton CL, Follis M, Munaweera J, Maisha FM, Mulligan CJ, Moore JM.

Front Cell Infect Microbiol. 2026 Jun 23;16:1769376. doi: 10.3389/fcimb.2026.1769376. eCollection 2026.

PMID: 42416278

Multi-class segmentation of aortic branches and zones in computed tomography angiography: The AortaSeg24 challenge.

Imran M, Krebs JR, Sivaraman VB, Zhang T, Kumar A, Ueland WR, Fassler MJ, Wang C, Huang J, Sun X, Wang L, Shi P, Rokuss M, Baumgartner M, Kirchhof Y, Maier-Hein KH, Isensee F, Liu S, Han B, Nguyen BT, Shin DJ, Ji-Woo P, Choi M, Uhm KH, Ko SJ, Lee C, Chun J, Kim JS, Zhang M, Zhang H, You X, Gu Y, Pan Z, Liu X, Liang X, Tiefenthaler M, Almar-Munoz E, Schwab M, Kotyushev M, Epifanov R, Wodzinski M, Müller H, Qayyum A, Mazher M, Niederer SA, Wang Z, Yang K, Ren J, Korreman SS, Gao Y, Zeng H, Zheng H, Zheng R, Yue J, Zhou F, Liu B, Cosman A, Liang M, Zhao C, Upchurch GR Jr, Zhou Y, Cooper MA, Shao W.

Med Image Anal. 2026 Jul 3;113:104188. doi: 10.1016/j.media.2026.104188. Online ahead of print.

PMID: 42413466

Single-nucleotide RNA m⁶A mapping in bovine preimplantation development reveals site-specific regulation of RPL12 at zygotic genome activation.

Iyyappan R, Niu Y, Li Y, Ming H, Pajdzik K, Rakestraw NR, Jain PK, He C, Zong C, Jiang Z.

Cell Rep. 2026 Jul 6;45(7):117635. doi: 10.1016/j.celrep.2026.117635. Online ahead of print.

PMID: 42406595

Combining genotoxic gut bacterial strains increases tumor burden and accelerates onset in a germ-free mouse model of colon carcinogenesis.

Plitt T, Piessevaux A, Rajpal U, Fischer J, Spindler MP, Ruprecht C, Li Z, Mogno I, Yang Y, Desch AN, Chu G, Jiang Z, Wang J, Gevers D, Pocalyko D, Geis AL, Jobin C, Bachman KE, Sears CL, Britton GJ, San Mateo LR, Faith JJ.

Cell Rep. 2026 Jul 7;45(7):117645. doi: 10.1016/j.celrep.2026.117645. Online ahead of print.

PMID: 42412611

Possible actions of methionine on embryonic development and postnatal phenotype of calves produced after embryo transfer.

Sagheer M, Hoorn QA, Ojeda-Rojas OA, Block J, Sproull AJ, Heredia D, Cuellar CJ, Maia TS, Haimon ML, Maldonado MBC, Bittar JH, Gonella-Diaza AM, Hansen PJ.

Theriogenology. 2026 Jul 1;265:118066. doi: 10.1016/j.theriogenology.2026.118066. Online ahead of print.

PMID: 42407162

Phylogenomics confirm the monophyly of Guzmania (Bromeliaceae: Tillandsioideae) and provide evidence regarding alternative hybridization scenarios involving G. monostachia.

Krupar S, Godden GT, Crowl AA, Patten SR, Cellinese N.

Am J Bot. 2026 Jul 8:e70229. doi: 10.1002/ajb2.70229. Online ahead of print.

PMID: 42417074

Tandem-sgRNA Provides an Effective Reverse Genetic Approach for Suppression of Streptomyces Biosynthetic Gene Clusters and Secondary Metabolism.

Zhang C, Josyula NK, Cornejo-Corona I, Watson R, Cediel-Becerra JD, Chevrette MG, Devarenne TP, Straight PD.

ACS Synth Biol. 2026 Jul 11. doi: 10.1021/acssynbio.6c00274. Online ahead of print.

PMID: 42435068

Anti-HSV-1 Activity and Na+, K+-ATPase Modulation from Extracts and Nanoemulsions of Myrciaria floribunda Leaves.

Souza E Souza KFC, Tietbohl LAC, Machado FP, Rocha L, de Albuquerque CFG, Bloom DC, Paixão ICNP, Burth P.

J Appl Microbiol. 2026 Jul 10:lxag171. doi: 10.1093/jambio/lxag171. Online ahead of print.

PMID: 42429467

Editorial: Clinical prediction models in cancer through bioinformatics.

Yang W, Wang J, Awasthee N, Singh R.

Front Bioinform. 2026 Jun 19;6:1902687. doi: 10.3389/fbinf.2026.1902687. eCollection 2026.

PMID: 42404400

Selective inhibition of respiratory complex I reveals a bioenergetic vulnerability in Francisella.

Khalid N, Van Horn CM, Li D, Ostrov DA, Eshraghi A.

bioRxiv [Preprint]. 2026 Jun 5:2026.06.04.730185. doi: 10.64898/2026.06.04.730185.

PMID: 42282675

Phlag: scalable detection of genomics regions with unexplained phylogenetic heterogeneity.

Şapcı AOB, Arasti S, Braun EL, Mirarab S.

Bioinformatics. 2026 Jul 1;42(Supplement_1):btag273. doi: 10.1093/bioinformatics/btag273.

PMID: 42412820

Factors Influencing Pediatrician Life Satisfaction.

Cull WL, Frintner MP, Marsicek SM, Byrne BJ.

J Pediatr. 2026 Jul 8:115230. doi: 10.1016/j.jpeds.2026.115230. Online ahead of print.

PMID: 42419500

Molecular Epidemiology of Candidozyma auris Within a Case Cluster in North-Central Florida: Diverse Origins and Long-term Persistence of Strains.

Morris JG Jr, Tagliamonte MS, Messcher RL, Revazishvili T, Bourgeois BA, Kaplan ZD, Furat EA, Iovine NM, Cherabuddi K, Lednicky JA, Salemi M.

Open Forum Infect Dis. 2026 Jul 7;13(7):ofag379. doi: 10.1093/ofid/ofag379. eCollection 2026 Jul.

PMID: 42434383

Single-nucleus multiomic atlas of ALS primary motor cortex nominates neuroprotective WDR49-expressing astrocytes.

Bonsall S, Kazu RS, King M, Leung D, Mahiddine FY, Highley JR, Strange A, Chen Y, Sassani M, Cabras S, Bowden KM, Wareing HE, Eldahshoury MK, Boyne JR, Collins M, Monte EM, Harvey C, Gornall SB, Jangid A, Treanor C, Moll T, van Dijk CH, Huang Y, Urban AE, Shaw PJ, West RJH, Kenna KP, Hornstein E, Zhang S, Cooper-Knock J, Zhou J, Snyder MP.

Res Sq [Preprint]. 2026 Jun 1:rs.3.rs-9853460. doi: 10.21203/rs.3.rs-9853460/v1.

PMID: 42281996