UFGI Publication Round-Up: Week of 5/5/2025

Simmons NE, Barnes DKA, Scourse JD, Whitaker JM, Garza TN, Janosik AM.

Mar Pollut Bull. 2025 Mar;212:117503. doi: 10.1016/j.marpolbul.2024.117503. Epub 2025 Jan 8. PMID: 39787906.

Targeted genome mining with GATOR-GC maps the evolutionary landscape of biosynthetic diversity.

Cediel-Becerra JDD, Cumsille A, Guerra S, Ding Y, de Crécy-Lagard V, Chevrette MG.

bioRxiv [Preprint]. 2025 Feb 28:2025.02.24.639861. doi: 10.1101/2025.02.24.639861. PMID: 40060561; PMCID: PMC11888242.

GDP-mannose 4,6-dehydratase is a key driver of MYCN-amplified neuroblastoma core fucosylation and tumorigenesis.

Zhu B, Pitts MG, Buoncristiani MD, Bryant LT, Lopez-Nunez O, Gurria JP, Shedlock C, Ribas R, Keohane S, Liu J, Wang C, Gentry MS, Shelman NR, Allison DB, Evers BM, Sun RC, Rellinger EJ.

Oncogene. 2025 May;44(18):1272-1283. doi: 10.1038/s41388-025-03297-0. Epub 2025 Feb 16.

PMID: 39956863

Protocol for high-power, brain-focused microwave fixation to define rodent metabolism.

Cantrell AR, Hawkinson TR, Juras JA, Webb MB, Medina T, Ribas RA, Collins J, Bunnell AA, Young LEA, Markussen KH, Andres DA, Long JR, Vander Kooi CW, Smith BN, Sun RC, Gentry MS.

STAR Protoc. 2025 Apr 25;6(2):103794. doi: 10.1016/j.xpro.2025.103794. Online ahead of print.

PMID: 40287939

Acceptance of Crop Biotechnology Requires a Change in Communication Strategy.

Folta KM.

Plant Physiol. 2025 May 2:kiaf167. doi: 10.1093/plphys/kiaf167. Online ahead of print.

PMID: 40314159

Integrated Multiomics Analyses of the Molecular Landscape of Sarcopenia in Alcohol-Related Liver Disease.

Welch N, Kannan P, Mishra S, Bellar A, Agrawal V, Kidd G, Benson E, Musich R, Tabbalat R, Li L, Brown JM, Willard B, Esser KA, Nagy LE, Dasarathy S.

J Cachexia Sarcopenia Muscle. 2025 Jun;16(3):e13818. doi: 10.1002/jcsm.13818.

PMID: 40308032

Streamlining Global Germplasm Exchange: Integrating Scientific Rigor and Common Sense to Exclude Phantom Agents from Regulation.

Tzanetakis IE, Aknadibossian V, Špak J, Constable F, Harper SJ, Hammond J, Candresse T, Folimonova SY, Freitas-Astúa J, Fuchs M, Jelkmann W, Maliogka VI, Marais A, Martin RR, Mollov D, Vidalakis G, Aboughanem-Sabanadzovic N, Al Rwahnih M, Alabi OJ, Alioto D, Atanda HY, Bagi F, Baranwal VK, Barbosa C, Bar-Joseph M, Batista Le Riverend L, Belien T, Benítez-Galeano MJ, Bennypaul H, Bertaccini A, Bester R, Blouin AG, Blystad DR, Botermans M, Bozan O, Brakta A, Brans Y, Bulajić A, Caglayan K, Catara A, Choueiri E, Cieślińska M, Cook G, Cui W, da Graça J, Davino S, Delmiglio C, Dewdney MM, Di Serio F, Diaz-Lara A, Digiaro M, Djelouah K, Dong YF, Donovan N, Druciarek TZ, Duran-Vila N, Elçi E, Esquivel-Fariña A, Fall ML, Fan XD, Figueroa J, Fiore N, Fowkes AR, Fox A, Fránová J, Fuchs R, Gaafar YZA, García ML, Ghosh D, Girardi E, Glasa M, Gomez Talquenca S, Gratz A, Gritsenko D, Hajeri S, Hajizadeh M, Hamborg Z, Ho T, Holeva M, Holkar SK, Horner M, Hurtado-Gonzales OP, Ippolito A, Isac V, Iwanami T, Jofre-Y-Garfias AE, Jordan R, Katis N, Koloniuk I, Konings H, Križanac I, Krueger R, Kyrychenko A, Laranjeira F, Lavagi-Craddock I, Levy A, Licciardello G, Lu QY, MacFarlane SA, Marcone C, Maree HJ, Margaria P, Martić A, Massart S, Mathioudakis MM, Matić S, Mavric Plesko I, Meekes ETM, Mehle N, Melzer MJ, Meng B, Menzel W, Miljanić V, Minafra A, Minutolo M, Mitra A, Moreno P, Navarro L, Navarro B, Nerva L, Okić A, Olmos A, Önelge N, Osundahunsi B, Palacios MF, Pallas V, Panno S, Perez-Egusquiza Z, Poudel-Ward B, Radišek S, Ramos-González PL, Ramteke P, Ranabhat NB, Rivarez MPS, Rivas F, Roenhorst A, Roy A, Ruiz-García AB, Sabanadzovic S, Šafářová D, Saldarelli P, Salem N, Sanahuja Solsona G, Schoen R, Sharma SK, Shilts T, Sierra-Mejia A, Singh S, Skelton A, Škorić D, Stainton D, Štajner N, Starović M, Stuchi E, Svoboda P, Tahzima R, Tang J, Tessitori M, Thermoz JP, Thompson E, Thompson J, Trebicki P, Turina M, Ulubas Serce C, Umble J, Valiunas D, Varallyay E, Varma A, Varveri C, Vásquez-Gutiérrez U, Vazquez-Iglesias I, Veerakone S, Villamor DE, Vives MC, Vončina D, Wang J, Westenberg M, Wetzel T, Winter S, Wright G, Wulff NA, Xu WX, Yokomi R, Zhou C, Zikeli K, Zindović J.

Plant Dis. 2025 Apr;109(4):736-755. doi: 10.1094/PDIS-04-24-0745-FE. Epub 2024 Dec 29.

PMID: 39743745

Development of New Intrapulmonary Shunts in Pulmonary Arterial Hypertension Treated with Sotatercept.

Mitchell S, Gomez R, Mathavan A, Mathavan A, Kalra S, Bryant A, Ataya A.

Am J Respir Crit Care Med. 2025 Apr 17. Online ahead of print.

PMID: 40315133

Galleria mellonella Invertebrate Model Mirrors the Pathogenic Potential of Mycoplasma alligatoris within the Natural Host.

Burne AM, Richey LJ, Schoeb TR, Brown MB.

Transbound Emerg Dis. 2024 Mar 22;2024:3009838. doi: 10.1155/2024/3009838. eCollection 2024.

PMID: 40303151

Innate immune training in the neonatal response to sepsis.

Rincon JC, Wang D, Polcz VE, Barrios EL, Dirain ML, Ungaro RF, Nacionales DC, Zeumer-Spataro L, Xiao F, Efron PA, Moldawer LL, Cai G, Larson SD.

Mol Med. 2025 Apr 30;31(1):159. doi: 10.1186/s10020-025-01179-5.

PMID: 40307728

Biodiversity and biogeography of zooxanthellate soft corals across the Indo-Pacific.

McFadden CS, Erickson KL, Lane A, Nassongole B, Aguilar S, Dunakey SK, Durkin KM, Lalas JAA, Kushida Y, Macrina L, Minor NP, Morales-Paredes M, Nelson J, Peddada A, Poole S, Porto R, Purow-Ruderman R, Snyder KE, Wismar T, Samimi-Namin K, Baria-Rodriguez MV, Benzoni F, Huang D, Reimer JD, Paulay G, Quattrini AM, Ekins M, Benayahu Y.

Sci Rep. 2025 May 2;15(1):15461. doi: 10.1038/s41598-025-98790-7.

PMID: 40316679

How SynBio Can *Realistically* Impact Crop Improvement and Agriculture.

Burgess SJ, Wright RC, Temme K, Voiniciuc C, Hanson AD.

Plant Physiol. 2025 May 3:kiaf179. doi: 10.1093/plphys/kiaf179. Online ahead of print.

PMID: 40317193

Regional trends and disparities in newer GLP1 receptor agonist initiation among real-world adult patients eligible for obesity treatment.

Radwan RM, Lee YA, Kotecha P, Wright DR, Hernandez I, Ramon R, Donahoo WT, Chen Y, Allen JM, Bian J, Guo J.

Diabetes Obes Metab. 2025 Jun;27(6):3113-3123. doi: 10.1111/dom.16318. Epub 2025 Mar 4.

PMID: 40035205

Effect of Oral Insulin on Early Combined Glucose and C-Peptide Endpoints in Individuals at High-Risk for Type 1 Diabetes.

Triolo TM, Jacobsen LM, Cuthbertson D, Sims EK, Ismail HM, Redondo MJ, Lundgren M, DiMeglio LA, Gottlieb PA, Atkinson MA, Krischer JP, Schatz DA, Sosenko JM.

Pediatr Diabetes. 2024 Oct 3;2024:8343868. doi: 10.1155/2024/8343868. eCollection 2024.

PMID: 40302969

Potential of the Small Molecules Piperidine and Pyrrolidine Against Copper-Resistant Xanthomonas perforans, Causal Agent of Bacterial Spot of Tomato.

Pierre K, Liu Q, Jibrin MO, Jones JB, Zhang S.

Plant Dis. 2025 Apr;109(4):875-881. doi: 10.1094/PDIS-04-24-0929-RE. Epub 2025 Apr 9.

PMID: 39460399

Management of severe acute chest syndrome in a patient with a history of severe delayed haemolytic transfusion reaction.

Taha OB, Liu T, Mandernach MW.

BMJ Case Rep. 2025 Apr 29;18(4):e258680. doi: 10.1136/bcr-2023-258680.

PMID: 40306746

A GDP-mannose-1-phosphate guanylyltransferase as a potential HIGS target against Sclerotinia sclerotiorum.

Zhang C, Xu Y, Li L, Wu M, Fang Z, Tan J, Rollins JA, Lin H, Huang X, Mansfield SD, Li X, Zhang Y.

PLoS Pathog. 2025 May 2;21(5):e1013129. doi: 10.1371/journal.ppat.1013129. Online ahead of print.

PMID: 40315235

Diversification of an emerging bacterial plant pathogen; insights into the global spread of Xanthomonas euvesicatoria pv. perforans.

Timilsina S, Iruegas-Bocardo F, Jibrin MO, Sharma A, Subedi A, Kaur A, Minsavage GV, Huguet-Tapia JC, Klein-Gordon J, Adhikari P, Adhikari TB, Cirvilleri G, de la Barrera LBT, Bernal E, Creswell TC, Doan TTK, Coutinho TA, Egel DS, Félix-Gastélum R, Francis DM, Kebede M, Ivey ML, Louws FJ, Luo L, Maynard ET, Miller SA, Nguyen NTT, Osdaghi E, Quezado-Duval AM, Roach R, Rotondo F, Ruhl GE, Shutt VM, Thummabenjapone P, Trueman C, Roberts PD, Jones JB, Vallad GE, Goss EM.

PLoS Pathog. 2025 Apr 9;21(4):e1013036. doi: 10.1371/journal.ppat.1013036. eCollection 2025 Apr.

PMID: 40203032

Treating Depression With Repetitive Transcranial Magnetic Stimulation: A Clinician’s Guide.

Chen L, Fukuda AM, Jiang S, Leuchter MK, van Rooij SJH, Widge AS, McDonald WM, Carpenter LL.

Am J Psychiatry. 2025 Apr 30:appiajp20240859. doi: 10.1176/appi.ajp.20240859. Online ahead of print.

PMID: 40302403

Extended Quality (eQual): Radial Threshold Clustering Based on n-ary Similarity.

Chen L, Smith M, Roe DR, Miranda-Quintana RA.

J Chem Inf Model. 2025 May 1. doi: 10.1021/acs.jcim.4c02341. Online ahead of print.

PMID: 40309753

Unprecedented enhancement of piezoelectricity of wurtzite nitride semiconductors via thermal annealing.

Mondal S, Tanim MMH, Baucom G, Dabas SS, Gao J, Liu J, Ye Z, Gaddam V, Ross A, Chen LQ, Kim H, Tabrizian R, Mi Z.

Nat Commun. 2025 May 3;16(1):4130. doi: 10.1038/s41467-025-59179-2.

PMID: 40319038

A New Discrete-Geometry Approach for Integrative Docking of Proteins Using Chemical Cross-Links.

Zhang Y, Jindal M, Viswanath S, Sitharam M.

J Chem Inf Model. 2025 Apr 29. doi: 10.1021/acs.jcim.4c02412. Online ahead of print.

PMID: 40299996

Dopaminergic Central Neurons and Peripheral Sensory Systems in Pteropod and Nudibranch Molluscs.

Norekian TP, Moroz LL.

J Comp Neurol. 2025 May;533(5):e70054. doi: 10.1002/cne.70054.

PMID: 40287934

Prospective Harmonization, Common Data Elements, and Sharing Strategies for Multicenter Pre-Clinical Traumatic Brain Injury Research in the Translational Outcomes Project in Neurotrauma Consortium.

Wanner IB, McCabe JT, Huie JR, Harris NG, Paydar A, McMann-Chapman C, Tobar A, Korotcov A, Burns MP, Koehler RC, Wan J, Allende Labastida J, Tong J, Zhou J, Davis LM, Radabaugh HL, Ferguson AR, Van Meter TE, Febo M, Bose P, Wang KK, Kobeissy F, Apiliogullari S, Zhu J, Rubenstein R, Awwad HO; TOP-NT Consortium Investigators.

J Neurotrauma. 2025 May;42(9-10):877-897. doi: 10.1089/neu.2023.0653. Epub 2025 Jan 20.

PMID: 39831841