UFGI Publication Round-Up: Week of 12/1/2025

UFGI Publication Round-Up: Week of 12/1/2025

Considerations for Spatial Omics, Metabolite Analyses, and Tissue-Harvesting Artifacts.

Hanrieder J, Sun R, Ellis SR, Pahnke J, Savas JN.

J Neurochem. 2025 Dec;169(12):e70315. doi: 10.1111/jnc.70315.

PMID: 41347273

 

 

Conditional Dmd ablation in muscle and brain causes profound effects on muscle function and neurobehavior.

Karuppasamy M, English KG, Conner JR, Rorrer SN, Lopez MA, Crossman DK, Paul JR, Gutierrez-Monreal MA, Gamble KL, Esser KA, Widrick JJ, Kunkel LM, Alexander MS.

Commun Biol. 2025 Dec 2;8(1):1736. doi: 10.1038/s42003-025-09128-y.

PMID: 41331052

 

 

Evaluation of Plasmodium falciparum PSSP17 essentiality in human-to-mosquito transmission and its prospective candidacy as a biomarker.

López-Gutiérrez B, Hathaway N, Alonso-Palomares L, Nyasembe VO, Kato M, Hamerly T, Parr JB, Juliano JJ, Harbers M, Dinglasan RR.

iScience. 2025 Oct 31;28(12):113919. doi: 10.1016/j.isci.2025.113919. eCollection 2025 Dec 19.

PMID: 41321633

 

 

Urinary extracellular vesicles for high-precision bladder cancer subtyping and prognosis.

Greenberg ZF, Hutchinson TE, Kahn J, Graim KS, O’Malley P, He M.

medRxiv [Preprint]. 2025 Oct 17:2025.10.14.25338041. doi: 10.1101/2025.10.14.25338041.

PMID: 41282769

 

 

Leveraging Medicaid Claims to Map Complex Chronic Conditions for Emergency Preparedness.

Hall JM, McCraney MR, Vincent CA, Lurk PA, Erichsen K, Chakrabarti C, Mkuu RS, Cogle CR.

J Public Health Manag Pract. 2025 Dec 3. doi: 10.1097/PHH.0000000000002283. Online ahead of print.

PMID: 41337630

 

 

Impaired nick recognition and ligation efficiency by LIG1 K845N variant linked to Huntington’s disease.

Ratcliffe J, Lerner CE, Balu K, Chatterjee S, Lee KM, Caglayan M.

NAR Mol Med. 2025 Oct 28;2(4):ugaf038. doi: 10.1093/narmme/ugaf038. eCollection 2025 Oct.

PMID: 41346861

 

 

Developmental exposure to ethylbenzene: Elucidating the effects of volatile organic compounds on phenotypic and transcriptomic endpoints using zebrafish (Danio rerio).

Connell ML, Gonzalez GF, Meyer DN, Hahn A, Cavaneau E, Kintzele EK, Baker BB, Baker TR.

J Hazard Mater. 2025 Nov 25;501:140620. doi: 10.1016/j.jhazmat.2025.140620. Online ahead of print.

PMID: 41337969

 

 

Potential Protective Effect of Statins against High-Grade Squamous Intraepithelial Lesions in Women with Metabolic Comorbidities.

Gautam P, Zhao J, Levi C, Raman S, Owens BD, Strauss JF 3rd, Tossas KY.

Cancer Epidemiol Biomarkers Prev. 2025 Dec 1;34(12):2169-2177. doi: 10.1158/1055-9965.EPI-25-0627.

PMID: 41065349

 

 

Sepsis Induces Age- and Sex-Specific Chromatin Remodeling in Myeloid-Derived Suppressor Cells.

Charles AM, Rodhouse CE, Darden DB, Gauthier ML, Zhou M, Hernandez-Rios M, Wang D, Casadesus G, Bible L, Mohr AM, Xiao F, Cai G, Brant JO, Wallet SM, Mathews CE, Moldawer LL, Chakrabarty P, Bacher RL, Efron PA, Maile R, Kladde MP.

bioRxiv [Preprint]. 2025 Oct 16:2025.05.26.656229. doi: 10.1101/2025.05.26.656229.

PMID: 41279791

 

 

Revealing neurocognitive and behavioral patterns through unsupervised manifold learning of dynamic brain data.

Zhou Z, Liu J, Wu WE, Fang R, Liu S, Wei Q, Yan R, Guo Y, Tao Q, Wang Y, Islam MT, Xing L.

Nat Comput Sci. 2025 Dec 4. doi: 10.1038/s43588-025-00911-9. Online ahead of print.

PMID: 41345469

 

 

A respiratory signature of disease progression in the Pompe rat.

Mickle AR, Rana S, Benevides ES, Byrne BJ, Fuller DD, Dale EA.

J Neurophysiol. 2025 Dec 5. doi: 10.1152/jn.00305.2025. Online ahead of print.

PMID: 41348648

 

 

tRNA Modification Landscapes in Streptococci: Shared Losses and Clade-Specific Adaptations.

Tsui HT, Chan CK, Yuan Y, Elias R, Sun J, Marchand V, Jaroch M, Sun G, Manzoor I, Kutchuashvili A, Motorin Y, Leszczynska G, Seaton K, Rice KC, Swairjo MA, Winkler ME, Dedon PC, de Crécy-Lagard V.

bioRxiv [Preprint]. 2025 Nov 8:2025.10.13.681863. doi: 10.1101/2025.10.13.681863.

PMID: 41280037

 

 

Paired-Sample and Pathway-Anchored MLOps Framework for Robust Transcriptomic Machine Learning in Small Cohorts: Model Classification Study.

Shabanian M, Pouladi N, Wilson L, Prosperi M, Lussier YA.

JMIR Bioinform Biotechnol. 2025 Oct 8;6:e80735. doi: 10.2196/80735.

PMID: 41342203

 

 

Nutrition in infants with hypoxic-ischemic encephalopathy: insights from a single-center experience on parenteral and enteral feeding during therapeutic hypothermia.

Molina Stornelli I, Bliznyuk N, Roig JC, Neu J, Kisilewicz K, Rajderkar D, Sura L, Patel S, Chong D, Vadakal S, Edwards T, Weiss MD.

J Matern Fetal Neonatal Med. 2025 Dec;38(1):2592375. doi: 10.1080/14767058.2025.2592375. Epub 2025 Dec 3.

PMID: 41338591

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