UFGI Publication Round-Up: Week of 10/27/2025

Evaluating COVID-19 severity prediction and immune dynamics with NULISAseq: Insights from the IMPACC study.

Abe K, Holmes TH, Nguyen TT; IMPACC Network; Kim-Schulze S, Levy O, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez-Sesma A, Simon V, Kraft M, Bime C, Calfee CS, Erle DJ, Schaenman J, Reed EF, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Maecker HT.

J Immunol. 2025 Oct 30:vkaf263. doi: 10.1093/jimmun/vkaf263. Online ahead of print.

PMID: 41166719

 

 

Chromatin Remodeling and Transcriptional Silencing Define the Dynamic Innate Immune Response of Tissue Resident Macrophages After Burn Injury.

Kim HG, Gauthier ML, Higgs A, Hernandez DA, Zhou M, Brant JO, Bacher RL, Darden DB, Wallet SM, Mathews CE, Moldawer LL, Efron PA, Kladde MP, Maile R.

Shock. 2025 Oct 22. doi: 10.1097/SHK.0000000000002746. Online ahead of print.

PMID: 41166121

 

 

Infection timelines and co-infection effects of Israeli acute paralysis virus and deformed wing virus in the honey bee (Apis mellifera).

Prayugo V, Payne AN, Bonning BC, Dolezal AG.

J Invertebr Pathol. 2025 Oct 29;214:108484. doi: 10.1016/j.jip.2025.108484. Online ahead of print.

PMID: 41173177

 

 

Tomato pollen tube growth requires flavonol glycosylation.

Shin D, Zhao H, Tucker E, Cho KH, Liu D, Wang Z, Latimer S, Basset G, Wang Y, Ding Y, Kim J.

Plant Physiol. 2025 Nov 1:kiaf556. doi: 10.1093/plphys/kiaf556. Online ahead of print.

PMID: 41175094

 

 

Enhancing AAV9-UFμDys1 Gene Therapy Efficacy Through Immunosuppression in Mice with Pre-Existing Immunity and Enabling Redosing Strategies for Duchenne Muscular Dystrophy.

Saha M, Bhake R, Meyers CA, Coleman K, Trivedi PD, Gallman M, Biswas M, Herzog RW, Byrne BJ, Corti M.

Hum Gene Ther. 2025 Oct 13. doi: 10.1177/10430342251385586. Online ahead of print.

PMID: 41167625

 

 

US Pediatricians’ Reports of Feeling Unsafe at Work: Experiences with Harassment and Attacks.

Marsicek SM, Gottschlich EA, Frintner MP, Byrne BJ, Leslie LK.

Acad Pediatr. 2025 Oct 29:103157. doi: 10.1016/j.acap.2025.103157. Online ahead of print.

PMID: 41173266

 

 

GLARE: discovering hidden patterns in spaceflight transcriptome using representation learning.

Seo D, Strickland HF, Zhou M, Barker R, Ferl RJ, Paul AL, Gilroy S.

NPJ Microgravity. 2025 Oct 28;11(1):76. doi: 10.1038/s41526-025-00525-5.

PMID: 41152268

 

 

Author Correction: A consensus immune dysregulation framework for sepsis and critical illnesses.

Moore AR, Zheng H, Ganesan A, Hasin-Brumshtein Y, Maddali MV, Levitt JE, van der Poll T, Lu J, Bouma HR, Scicluna BP, Giamarellos-Bourboulis EJ, Kotsaki A, Martin-Loeches I, Garduno A, Hinson J, Rothman RE, Sevransky J, Wright DW, Atreya MR, Moldawer LL, Efron PA, Kralovcova M, Karvunidis T, Giannini HM, Meyer NJ, Sweeney TE, Rogers AJ, Khatri P.

Nat Med. 2025 Oct 27. doi: 10.1038/s41591-025-04066-y. Online ahead of print.

PMID: 41145793

 

 

Survivors of Surgical Sepsis Demonstrate Poor Long-Term Free-Living Physical Activity Levels.

Mankowski RT, Manini TM, Brakenridge SC, Efron PA, Mardini MT.

Shock. 2025 Sep 22. doi: 10.1097/SHK.0000000000002727. Online ahead of print.

PMID: 41166114

 

 

Quantifying Nuance within Sepsis-Associated Immune Suppression toward Diagnostic Certainty.

Caldwell CC, Maile R, Mazer MB, McGonagill PW, Bergmann CB, Gould RW, Rao M, Hernández-Ríos M, Ungaro RF, Loftus TJ, Efron PA, Remy KE, Brakenridge SC, Badovinac VP, Griffith TS, Hotchkiss RS, Moldawer LL.

Shock. 2025 Oct 21. doi: 10.1097/SHK.0000000000002745. Online ahead of print.

PMID: 41166166

 

 

Understanding Callus Types in Maize by Genetic Mapping and Transcriptional Profiling.

Lin G, Liu Y, Tamang TM, Qin Y, Zhao M, Zheng J, Wang G, Wei H, Park S, Cho MJ, White FF, Liu Y, Liu S.

Plants (Basel). 2025 Oct 15;14(20):3168. doi: 10.3390/plants14203168.

PMID: 41157726

 

 

Author Correction: Fine-mapping genomic loci refines bipolar disorder risk genes.

Koromina M, Ravi A, Panagiotaropoulou G, Schilder BM, Humphrey J, Braun A, Bigdeli T, Chatzinakos C, Coombes BJ, Kim J, Liu X, Terao C, O’Connell KS, Adams MJ, Adolfsson R, Alda M, Alfredsson L, Andlauer TFM, Andreassen OA, Antoniou A, Baune BT, Bengesser S, Biernacka J, Boehnke M, Bosch R, Cairns MJ, Carr VJ, Casas M, Catts S, Cichon S, Corvin A, Craddock N, Dafnas K, Dalkner N, Dannlowski U, Degenhardt F, Di Florio A, Dikeos D, Fellendorf FT, Ferentinos P, Forstner AJ, Forty L, Frye M, Fullerton JM, Gawlik M, Gizer IR, Gordon-Smith K, Green MJ, Grigoroiu-Serbanescu M, Guzman-Parra J, Hahn T, Henskens F, Hillert J, Jablensky AV, Jones L, Jones I, Jonsson L, Kelsoe JR, Kircher T, Kirov G, Kittel-Schneider S, Kogevinas M, Landén M, Leboyer M, Lenger M, Lissowska J, Lochner C, Loughland C, MacIntyre DJ, Martin NG, Maratou E, Mathews CA, Mayoral F, McElroy SL, McGregor NW, McIntosh A, McQuillin A, Michie P, Mitchell PB, Moutsatsou P, Mowry B, Müller-Myhsok B, Myers RM, Nenadić I, Nievergelt CM, Nöthen MM, Nurnberger J, ‘Donovan MO, ‘Donovan CO, Ophoff RA, Owen MJ, Pantelis C, Pato C, Pato MT, Patrinos GP, Pawlak JM, Perlis RH, Porichi E, Posthuma D, Ramos-Quiroga JA, Reif A, Reininghaus EZ, Ribasés M, Rietschel M, Schall U, Schofield PR, Schulze TG, Scott L, Scott RJ, Serretti A, Smoller JW, Świątkowska B, Soler Artigas M, Stein DJ, Streit F, Toma C, Tooney P, Vawter MP, Vieta E, Vincent JB, Waldman ID, Weickert CS, Weickert T, Witt SH, Hong KS, Ikeda M, Iwata N, Won HH, Edenberg HJ, Ripke S, Raj T, Coleman JRI, Mullins N.

Nat Neurosci. 2025 Oct 27. doi: 10.1038/s41593-025-02133-8. Online ahead of print.

PMID: 41145888

 

 

Event-related potential correlates of visual processing across obsessive-compulsive and anxiety spectrum disorders: a scoping review.

Ayomen E, Keil A, Mathews CA.

Neurosci Biobehav Rev. 2025 Oct 30:106446. doi: 10.1016/j.neubiorev.2025.106446. Online ahead of print.

PMID: 41176080

 

 

Cold exposure induces the constitutively active thermogenic receptor, GPR3, via ERRα and ERRγ.

Sveidahl Johansen O, McIntyre RL, Rahbani JF, Zhang Q, Scholtes C, Lagarde DM, Billon C, Côté I, Delgado-Martin M, Tandio D, Basse AL, Eury E, Kralli A, Burris TP, Giguère V, Kazak L, Gerhart-Hines Z.

Mol Metab. 2025 Oct 29:102277. doi: 10.1016/j.molmet.2025.102277. Online ahead of print.

PMID: 41173363

 

 

Next-generation specimen digitization: capturing reflectance spectra from the world’s herbaria for modeling plant biology across time, space, and taxa.

Cavender-Bares J, White DM, Ahlstrand NI, Austin MW, Bastianelli D, Bazan S, Boughalmi K, Cardinal-McTeague W, Chacón-Madrigal E, Couvreur TLP, Davis C, Durgante FM, Grace OM, Guzmán Q JA, Hansen K, Hernández-Leal MS, Hopkins MJG, Jackson R, Kothari S, Lee AK, Léveillé-Bourret É, Pinto-Ledezma J, Quinteros Casaverde NL, Meireles JE, Neto-Bradley B, Nichodemus CO, Ree RH, Schmull M, Soltis DE, Soltis PS, Tuomisto H, Ustin SL, Vasconcelos CC.

New Phytol. 2025 Oct 31. doi: 10.1111/nph.70645. Online ahead of print.

PMID: 41174827

 

 

Analysis of muscle and blood RNA samples from patients with myotonic dystrophy type 1 reveals the presence of new mis-splicing biomarkers of disease severity.

Palma-Jiménez M, Ramirez-Carvajal L, Corrales E, Olafson H, Wang ET, Morales F.

J Med Genet. 2025 Oct 28:jmg-2025-110919. doi: 10.1136/jmg-2025-110919. Online ahead of print.

PMID: 41161721

 

 

GNAT family Pat2 is required for long-term survival on glycerol and catalyzes lysine acetylation of glycerol kinase in hypersaline-adapted archaea.

Judd HN, Sanchez KM, Dublino LS, Zhang GJ, Yu D, Gal D, Couto-Rodríguez RL, Wang X, Maupin-Furlow JA.

mBio. 2025 Oct 27:e0251425. doi: 10.1128/mbio.02514-25. Online ahead of print.

PMID: 41143516

 

 

A Bayesian framework for genome-wide circadian rhythmicity biomarker detection.

Ding H, Meng L, Zhang Y, Bryant AJ, Xing C, Esser KA, Chen L, Feng Y, Huo Z.

Brief Bioinform. 2025 Aug 31;26(5):bbaf552. doi: 10.1093/bib/bbaf552.

PMID: 41148221

 

 

Impact of dietary supplementation of beef cows with rumen-protected methionine during the periconceptional period on post-weaning performance of female offspring.

Heredia D, Tarnonsky F, Venturini M, Lopez-Duarte MC, Fernandez-Marenchino I, García-Guerra A, Luchini D, Hansen PJ, Pringle D, Dilorenzo N, Gonella-Diaza AM.

J Anim Sci. 2025 Oct 30:skaf380. doi: 10.1093/jas/skaf380. Online ahead of print.

PMID: 41165602