UFGI Publication Round-Up: Week of 03/03/2025

Montalvo AD, Gong Y, Collins JM, Wang D.

Genes (Basel). 2025 Feb 11;16(2):213. doi: 10.3390/genes16020213.

PMID: 40004542

The role of microbiomes in shaping insecticide resistance: current insights and emerging paradigms.

Malook SU, Arora AK, Wong ACN.

Curr Opin Insect Sci. 2025 Feb 23:101346. doi: 10.1016/j.cois.2025.101346. Online ahead of print.

PMID: 39999947

Interactions between type of culture medium and addition of serum on development and gene expression of bovine blastocysts produced in vitro.

Cuellar CJ, Ismail EA, Haimon ML, Hoorn QA, Yu F, Rabaglino MB, Hansen PJ.

Physiol Genomics. 2025 Feb 25. doi: 10.1152/physiolgenomics.00142.2024. Online ahead of print.

PMID: 39998448

Current Dengue Virus Vaccine Developments and Future Directions.

Anumanthan G, Sahay B, Mergia A.

Viruses. 2025 Jan 31;17(2):212. doi: 10.3390/v17020212.

PMID: 40006967

Long-read transcriptomics of caviid gammaherpesvirus 1: compiling a comprehensive RNA atlas.

Torma G, Dörmő Á, Fülöp Á, Tombácz D, Mizik M, Pretory AM, Lee S-C, Toth Z, Boldogkői Z.

mSystems. 2025 Feb 27:e0167824. doi: 10.1128/msystems.01678-24. Online ahead of print.

PMID: 40013795

Potential for bird-insect phenological mismatch in a tri-trophic system.

Belitz MW, Larsen EA, Hurlbert AH, Di Cecco GJ, Neupane N, Ries L, Tingley MW, Guralnick RP, Youngflesh C.

J Anim Ecol. 2025 Feb 24. doi: 10.1111/1365-2656.70007. Online ahead of print.

PMID: 39994832

Content Hubs, Information Flows, And Reactions for Pesticide-Related Discussions On Twitter.

Zhou T, Huang Y, Avanasi R, Brain RA, Prosperi M, Bian J.

Integr Environ Assess Manag. 2025 Feb 25:vjaf032. doi: 10.1093/inteam/vjaf032. Online ahead of print.

PMID: 39999018

DNA Damage Response Pharmacogenomic (DDR_PGx) Score Predicts Response to Chemotherapy Consisting of Gemtuzumab Ozogamicin in Pediatric AML: A Report from the Children’s Oncology Group.

Shastri VM, Chauhan L, Gbadamosi M, Alonzo TA, Wang YC, Aplenc R, Hirsch BA, Kolb EA, Gamis AS, Meshinchi S, Lamba JK.

Clin Cancer Res. 2025 Mar 3;31(5):890-898. doi: 10.1158/1078-0432.CCR-23-2073.

PMID: 38197878

Over-Expression of XA21 Binding Protein 3 Enhances Rice Survival Under Water-Deficit Stress.

Huang X, Chen X, Vergish S, Ding X, Liang X, Chen S, Koch K, Song WY.

Plant Sci. 2025 Feb 28:112454. doi: 10.1016/j.plantsci.2025.112454. Online ahead of print.

PMID: 40024611

Relationships between the menstrual cycle and neuropsychiatric and physical symptoms in females with Tourette syndrome.

Noriega-Makarskyy DT, Realbuto E, Kaylor A, Osiecki L, Essa A, Yu D, Illmann C, Mathews CA, Scharf JM.

Front Neurol. 2025 Feb 11;16:1500766. doi: 10.3389/fneur.2025.1500766. eCollection 2025.

PMID: 40007742

Frequency and Clinical Significance of Clonal and Subclonal Driver Mutations in High-Risk Neuroblastoma at Diagnosis: A Children’s Oncology Group Study.

Berko ER, Naranjo A, Daniels AA, McNulty SN, Krytska K, Druley T, Zelley K, Koneru B, Chen L, Polkosnik G, Irwin MS, Bagatell R, Maris JM, Reynolds CP, DuBois SG, Park JR, Mossé YP.

J Clin Oncol. 2025 Mar 4:JCO2402407. doi: 10.1200/JCO-24-02407. Online ahead of print.

PMID: 40036726

Neoadjuvant immune checkpoint inhibitors for hepatocellular carcinoma.

Akula V, Chen L, Acikgoz Y, Klein K, Yavuz BG, Cevik L, Demir T, Manne A, Sahin I, Kaseb A, Hasanov E.

NPJ Precis Oncol. 2025 Mar 6;9(1):60. doi: 10.1038/s41698-025-00846-4.

PMID: 40050446

Transcallosal white matter and cortical gray matter variations in autistic adults aged 30-73 years.

Shin YS, Christensen D, Wang J, Shirley DJ, Orlando AM, Romero RA, Vaillancourt DE, Wilkes BJ, Coombes SA, Wang Z.

Mol Autism. 2025 Mar 6;16(1):16. doi: 10.1186/s13229-025-00652-6.

PMID: 40050930

Identification of a multi-omics factor predictive of long COVID in the IMPACC study.

Gabernet G, Maciuch J, Gygi JP, Moore JF, Hoch A, Syphurs C, Chu T, Jayavelu ND, Corry DB, Kheradmand F, Baden LR, Sekaly RP, McComsey GA, Haddad EK, Cairns CB, Rouphael N, Fernandez-Sesma A, Simon V, Metcalf JP, Agudelo Higuita NI, Hough CL, Messer WB, Davis MM, Nadeau KC, Pulendran B, Kraft M, Bime C, Reed EF, Schaenman J, Erle DJ, Calfee CS, Atkinson MA, Brackenridge SC, Melamed E, Shaw AC, Hafler DA, Ozonoff A, Bosinger SE, Eckalbar W, Maecker HT, Kim-Schulze S, Steen H, Krammer F, Westendorf K; IMPACC Network; Peters B, Fourati S, Altman MC, Levy O, Smolen KK, Montgomery RR, Diray-Arce J, Kleinstein SH, Guan L, Ehrlich LIR.

bioRxiv [Preprint]. 2025 Feb 14:2025.02.12.637926. doi: 10.1101/2025.02.12.637926.

PMID: 39990442

Functional composition of the Amazonian tree flora and forests.

Ter Steege H, Poorter L, Aguirre-Gutiérrez J, Fortunel C, Magnusson WE, Phillips OL, Pos E, Luize BG, Baraloto C, Guevara JE, Endara MJ, Baker TR, Umaña MN, van der Sande M, Pombo MM, McGlone M, Draper FC, do Amaral IL, Coelho LS, Wittmann F, Almeida Matos FD, Lima Filho DA, Salomão RP, Castilho CV, Carim MJV, Piedade MTF, Sabatier D, Molino JF, Demarchi LO, Cardenas Revilla JD, Schöngart J, Irume MV, Martins MP, da Silva Guimarães JR, Ramos JF, Bánki OS, Quaresma AC, Pitman NCA, Peres CA, de Jesus Rodrigues D, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Santos MCVD, Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Monteagudo Mendoza A, Carlos Montero J, De Souza CR, Oliveira MVN, Costa FRC, Engel J, Feldpausch TR, Castaño Arboleda N, Durgante FM, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Assis RL, Amaral DDD, Castellanos H, Householder JE, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Laurance SGW, Laurance WF, Rincón LM, Mori GB, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Vasconcelos CC, Aymard C GA, Brienen R, Sousa Assis PL, Gris D, Ribeiro KAF, Stevenson PR, Araujo-Murakami A, Cintra BBL, Feitosa YO, Mogollón HF, Silman MR, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, García-Villacorta R, Lopes A, Rios Paredes M, Vicentini A, Vieira ICG, Cornejo Valverde F, Alonso A, Arroyo L, Dallmeier F, Gomes VHF, Huari WN, Neill D, Peñuela Mora MC, de Aguiar DPP, Barbosa FR, Bredin YK, de Sá Carpanedo R, Carvalho FA, de Souza FC, Feeley KJ, Gribel R, Haugaasen T, Noronha JC, Pansonato MP, Pipoly JJ 3rd, Barlow J, Berenguer E, Silva IBD, Ferreira J, Ferreira MJ, Fine PVA, Guedes MC, Levis C, Carlos Licona J, Zegarra BEV, Vos VA, Cerón C, Fonty É, Henkel TW, Huamantupa-Chuquimaco I, Silveira M, Stropp J, Thomas R, Daly D, Dexter KG, Milliken W, Molina GP, Pennington T, Albuquerque BW, Campelo W, Claros AF, Klitgaard B, Pena JLM, Montenegro LT, Tello JS, Vriesendorp C, Chave J, Di Fiore A, Hilário RR, de Oliveira Pereira L, Phillips JF, Rivas-Torres G, van Andel TR, Hildebrand PV, Balee W, Barbosa EM, Bonates LCM, Dávila Doza HP, Zárate Gómez R, Gonzales GPG, Gonzales T, Hoffman B, Junqueira AB, Malhi Y, Miranda IPA, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Zent EL, Zent S, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Lobo G, Mori Vargas T, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Heijden GV, Torre EV, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Linares-Palomino R, Mendoza C, Mesones I, Parada GA, Torres-Lezama A, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Fortier RP, Garcia-Cabrera K, Hernandez L, Cuenca WP, Pansini S, Pauletto D, Arevalo FR, Sampaio AF, Valderrama Sandoval EH, Gamarra LV, Levesley A, Pickavance G.

Commun Biol. 2025 Mar 3;8(1):355. doi: 10.1038/s42003-025-07768-8.

PMID: 40033015

Tropical forests in the Americas are changing too slowly to track climate change.

Aguirre-Gutiérrez J, Díaz S, Rifai SW, Corral-Rivas JJ, Nava-Miranda MG, González-M R, Hurtado-M AB, Revilla NS, Vilanova E, Almeida E, de Oliveira EA, Alvarez-Davila E, Alves LF, de Andrade ACS, Lola da Costa AC, Vieira SA, Aragão L, Arets E, Aymard C GA, Baccaro F, Bakker YV, Baker TR, Bánki O, Baraloto C, de Camargo PB, Berenguer E, Blanc L, Bonal D, Bongers F, Bordin KM, Brienen R, Brown F, Prestes NCCS, Castilho CV, Ribeiro SC, de Souza FC, Comiskey JA, Valverde FC, Müller SC, da Costa Silva R, do Vale JD, de Andrade Kamimura V, de Oliveira Perdiz R, Del Aguila Pasquel J, Derroire G, Di Fiore A, Disney M, Farfan-Rios W, Fauset S, Feldpausch TR, Ramos RF, Llampazo GF, Martins VF, Fortunel C, Cabrera KG, Barroso JG, Hérault B, Herrera R, Honorio Coronado EN, Huamantupa-Chuquimaco I, Pipoly JJ, Zanini KJ, Jiménez E, Joly CA, Kalamandeen M, Klipel J, Levesley A, Oviedo WL, Magnusson WE, Dos Santos RM, Marimon BS, Marimon-Junior BH, de Almeida Reis SM, Melo Cruz OA, Mendoza AM, Morandi P, Muscarella R, Nascimento H, Neill DA, Menor IO, Palacios WA, Palacios-Ramos S, Pallqui Camacho NC, Pardo G, Pennington RT, de Oliveira Pereira L, Pickavance G, Picolotto RC, Pitman NCA, Prieto A, Quesada C, Ramírez-Angulo H, Réjou-Méchain M, Correa ZR, Reyna Huaymacari JM, Rodriguez CR, Rivas-Torres G, Roopsind A, Rudas A, Salgado Negret B, van der Sande MT, Santana FD, Maës Santos FA, Bergamin RS, Silman MR, Silva C, Espejo JS, Silveira M, Souza FC, Sullivan MJP, Swamy V, Talbot J, Terborgh JJ, van der Meer PJ, van der Heijden G, van Ulft B, Martinez RV, Vedovato L, Vleminckx J, Vos VA, Wortel V, Zuidema PA, Zwerts JA, Laurance SGW, Laurance WF, Chave J, Dalling JW, Barlow J, Poorter L, Enquist BJ, Ter Steege H, Phillips OL, Galbraith D, Malhi Y.

Science. 2025 Mar 7;387(6738):eadl5414. doi: 10.1126/science.adl5414. Epub 2025 Mar 7.

PMID: 40048518

RNAi and genome editing of sugarcane: Progress and prospects.

Brant E, Zuniga-Soto E, Altpeter F.

Plant J. 2025 Mar;121(5):e70048. doi: 10.1111/tpj.70048.

PMID: 40051334

The economic impact of purulent vaginal discharge in dairy herds within a single lactation.

Ojeda-Rojas OA, Pérez-Báez J, Casaro S, Chebel RC, Cunha F, De Vries A, Santos JEP, Lima FS, Pinedo P, Schuenemann GM, Bicalho RC, Gilbert RO, Rodriguez-Zas S, Seabury CM, Rosa G, Thatcher WW, Galvão KN.

J Dairy Sci. 2025 Mar;108(3):2710-2720. doi: 10.3168/jds.2024-24897. Epub 2024 Dec 9.

PMID: 39662820

Corrigendum to “Assessing different cross-validation schemes for predicting novel traits using sensor data: An application to dry matter intake and residual feed intake using milk spectral data” (J. Dairy Sci. 107:8084-8099).

Yilmaz Adkinson A, Abouhawwash M, VandeHaar MJ, Parker Gaddis KL, Burchard J, Peñagaricano F, White HM, Weigel KA, Baldwin R, Santos JEP, Koltes JE, Tempelman RJ.

J Dairy Sci. 2025 Mar;108(3):3007. doi: 10.3168/jds.2025-108-3-3007.

PMID: 40032409

Pervasive conservation of intron number and other genetic elements revealed by a chromosome-level genome assembly of the hyper-polymorphic nematode Caenorhabditis brenneri.

Teterina AA, Willis JH, Baer CF, Phillips PC.

Genome Biol Evol. 2025 Mar 4:evaf037. doi: 10.1093/gbe/evaf037. Online ahead of print.

PMID: 40037811

Active Cryptococcus neoformans glucuronoxylomannan production prevents elimination of cryptococcal CNS infection in vivo.

Enriquez V, Munzen ME, Porras LM, Charles-Niño CL, Yu F, Alviña K, Ramos RL, Dores MR, Giusti-Rodriguez P, Martinez LR.

J Neuroinflammation. 2025 Mar 4;22(1):61. doi: 10.1186/s12974-025-03384-9.

PMID: 40038673