UFGI Publication Round-Up: Week of 02/24/2025

Kondratova L, Vallejos CE, Conesa A.

BMC Genomics. 2025 Feb 20;26(1):169. doi: 10.1186/s12864-025-11309-2.

PMID: 39979816

Sub-network transcriptome dataset for diseases associated with exposure to bisphenol F and bisphenol S in human SH-SY5Y neuroblastoma cells.

Guzman A, Sanchez CL, Ivantsova E, Watkins J, Sutton S, Souders CL 2nd, Martyniuk CJ.

Data Brief. 2025 Jan 21;59:111313. doi: 10.1016/j.dib.2025.111313. eCollection 2025 Apr.

PMID: 39968403

Correction: Long-term safety and efficacy of cipaglucosidase alfa plus miglustat in individuals living with Pompe disease: an open-label phase I/II study (ATB200-02).

Byrne BJ, Schoser B, Kishnani PS, Bratkovic D, Clemens PR, Goker-Alpan O, Ming X, Roberts M, Vorgerd M, Sivakumar K, van der Ploeg AT, Goldman M, Wright J, Holdbrook F, Jain V, Benjamin ER, Johnson F, Das SS, Wasfi Y, Mozaffar T.

J Neurol. 2025 Feb 17;272(3):213. doi: 10.1007/s00415-025-12899-3.

PMID: 39960520

Implementing Pharmacogenomics Clinical Decision Support: A Comprehensive Tutorial on how to Integrate the Epic Genomics Module.

Hall BT, Eken E, Cavallari LH, Duarte JD, Wiisanen KW, Cicali EJ, Nguyen KA.

Clin Pharmacol Ther. 2025 Feb 17. doi: 10.1002/cpt.3599. Online ahead of print.

PMID: 39960348

Application of a new highly multiplexed amplicon sequencing tool to evaluate Plasmodium falciparum antimalarial resistance and relatedness in individual and pooled samples from Dschang, Cameroon.

Sadler JM, Simkin A, Tchuenkam VPK, Gerdes Gyuricza I, Fola AA, Wamae K, Assefa A, Niaré K, Thwai K, White SJ, Moss WJ, Dinglasan RR, Nsango SE, Tume CB, Parr JB, Ali IM, Bailey JA, Juliano JJ.

Front Parasitol. 2025 Feb 5;3:1509261. doi: 10.3389/fpara.2024.1509261. eCollection 2024.

PMID: 39975479

Genome sequences of pathogenic and non-pathogenic Pantoea ananatis strains in maize (Zea mays L.).

Duin IM, Baba VY, D’Amico-Willman KM, Paduan FN, Sugahara Rodrigues VH, Huguet-Tapia JC, Jones JB, Canteri MG, Leite Júnior RP, Balbi-Peña MI.

Access Microbiol. 2025 Feb 14;7(2):000709.v3. doi: 10.1099/acmi.0.000709.v3. eCollection 2025.

PMID: 39959468

RNA gain-of-function mechanisms in short tandem repeat diseases.

Davenport ML, Swanson MS.

RNA. 2025 Feb 19;31(3):349-358. doi: 10.1261/rna.080277.124.

PMID: 39725460

Epigenetic signatures of intergenerational exposure to violence in three generations of Syrian refugees.

Mulligan CJ, Quinn EB, Hamadmad D, Dutton CL, Nevell L, Binder AM, Panter-Brick C, Dajani R.

Sci Rep. 2025 Feb 27;15(1):5945. doi: 10.1038/s41598-025-89818-z.

PMID: 40016245

Conditional Dystrophin ablation in the skeletal muscle and brain causes profound effects on muscle function, neurobehavior, and extracellular matrix pathways.

Karuppasamy M, English KG, Conner JR, Rorrer SN, Lopez MA, Crossman DK, Paul JR, Monreal-Gutierrez MA, Gamble KL, Esser KA, Widrick JJ, Kunkel LM, Alexander MS.

bioRxiv [Preprint]. 2025 Feb 9:2025.01.30.635777. doi: 10.1101/2025.01.30.635777.

PMID: 39975305

Integrating phenomic selection using single-kernel near-infrared spectroscopy and genomic selection for corn breeding improvement.

Graciano RP, Peixoto MA, Leach KA, Suzuki N, Gustin JL, Settles AM, Armstrong PR, Resende MFR Jr.

Theor Appl Genet. 2025 Feb 26;138(3):60. doi: 10.1007/s00122-025-04843-w.

PMID: 40009111

Removal of Sulfamethoxazole Using Fe-Mn Biochar Filtration Columns: Influence of Co-existing Polystyrene Microplastics.

Huang J, Zimmerman AR, Wan Y, Bai X, Chen H, Zheng Y, Zhang Y, Yang Y, Fan Y, Gao B.

J Clean Prod. 2024 Oct 20;477:143877. doi: 10.1016/j.jclepro.2024.143877.

PMID: 40018068

Alpha-defensins increase NTHi binding but not engulfment by the macrophages enhancing airway inflammation in Alpha-1 antitrypsin deficiency.

Lee J, Mohammad N, Han K, Flagg-Dowie T, Magallon M, Brantly ML, Serban KA.

Front Immunol. 2025 Feb 12;16:1543729. doi: 10.3389/fimmu.2025.1543729. eCollection 2025.

PMID: 40013145

Gut-binding peptides as potential tools to reduce virus binding to honey bee gut surface proteins.

Guo Y, Taylor LN, Mishra R, Dolezal AG, Bonning BC.

Appl Environ Microbiol. 2025 Feb 28:e0241824. doi: 10.1128/aem.02418-24. Online ahead of print.

PMID: 40019274

The airborne herbivore-induced plant volatile indole is converted to benzoxazinoid defense compounds in maize plants.

Sorg A, Luo ZW, Li QB, Roy K, Basset GJ, Kim J, Hunter C, Chapple C, Rering C, Block AK.

New Phytol. 2025 Feb 25. doi: 10.1111/nph.70004. Online ahead of print.

PMID: 40007166

RGS10 attenuates systemic immune dysregulation induced by chronic inflammatory stress.

Jernigan JE, Staley HA, Baty Z, Bolen ML, Gomes BN, Holt J, Cole CL, Neighbarger NK, Dheeravath K, Merchak AR, Menees KB, Coombes SA, Tansey MG.

J Neuroinflammation. 2025 Feb 24;22(1):49. doi: 10.1186/s12974-024-03322-1.

PMID: 39994765

pTDP-43 levels correlate with cell type-specific molecular alterations in the prefrontal cortex of C9orf72 ALS/FTD patients.

Wang HV, Xiang JF, Yuan C, Veire AM, Gendron TF, Murray ME, Tansey MG, Hu J, Gearing M, Glass JD, Jin P, Corces VG, McEachin ZT.

Proc Natl Acad Sci U S A. 2025 Mar 4;122(9):e2419818122. doi: 10.1073/pnas.2419818122. Epub 2025 Feb 25.

PMID: 39999167