The publications below are from current and past Genetics & Genomics PhD students who were in the graduate program at the time of their article being published. New publications added regularly.
Students in the Genetics & Genomics Program average 4.38 publications, including 1.68 first-author publications, during their time in the program.
Nelson S, Gaza J, Ajayebi S, Masse R, Pho R, Scutero C, Martinusen S, Long L, Menezes A, Perez A, Denard C.
PERRC: Protease Engineering with Reactant Residence Time Control. bioRxiv [Preprint]. 2025 Mar 4:2025.03.02.641063. doi: 10.1101/2025.03.02.641063. PMID: 40093119; PMCID: PMC11908129.
Simmons NE, Barnes DKA, Scourse JD, Whitaker JM, Garza TN, Janosik AM.
Quantifying microplastics concentration of invertebrates from three Antarctic fjords. Mar Pollut Bull. 2025 Mar;212:117503. doi: 10.1016/j.marpolbul.2024.117503. Epub 2025 Jan 8. PMID: 39787906.
Cediel-Becerra JDD, Cumsille A, Guerra S, Ding Y, de Crécy-Lagard V, Chevrette MG.
Targeted genome mining with GATOR-GC maps the evolutionary landscape of biosynthetic diversity. bioRxiv [Preprint]. 2025 Feb 28:2025.02.24.639861. doi: 10.1101/2025.02.24.639861. PMID: 40060561; PMCID: PMC11888242.
Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, Bailey CB, Barra L, Booth TJ, Bozhüyük KAJ, Cediel-Becerra JDD, Charlop-Powers Z, Chevrette MG, Chooi YH, D’Agostino PM, de Rond T, Del Pup E, Duncan KR, Gu W, Hanif N, Helfrich EJN, Jenner M, Katsuyama Y, Korenskaia A, Krug D, Libis V, Lund GA, Mantri S, Morgan KD, Owen C, Phan CS, Philmus B, Reitz ZL, Robinson SL, Singh KS, Teufel R, Tong Y, Tugizimana F, Ulanova D, Winter JM, Aguilar C, Akiyama DY, Al-Salihi SAA, Alanjary M, Alberti F, Aleti G, Alharthi SA, Rojo MYA, Arishi AA, Augustijn HE, Avalon NE, Avelar-Rivas JA, Axt KK, Barbieri HB, Barbosa JCJ, Barboza Segato LG, Barrett SE, Baunach M, Beemelmanns C, Beqaj D, Berger T, Bernaldo-Agüero J, Bettenbühl SM, Bielinski VA, Biermann F, Borges RM, Borriss R, Breitenbach M, Bretscher KM, Brigham MW, Buedenbender L, Bulcock BW, Cano-Prieto C, Capela J, Carrion VJ, Carter RS, Castelo-Branco R, Castro-Falcón G, Chagas FO, Charria-Girón E, Chaudhri AA, Chaudhry V, Choi H, Choi Y, Choupannejad R, Chromy J, Donahey MSC, Collemare J, Connolly JA, Creamer KE, Crüsemann M, Cruz AA, Cumsille A, Dallery JF, Damas-Ramos LC, Damiani T, de Kruijff M, Martín BD, Sala GD, Dillen J, Doering DT, Dommaraju SR, Durusu S, Egbert S, Ellerhorst M, Faussurier B, Fetter A, Feuermann M, Fewer DP, Foldi J, Frediansyah A, Garza EA, Gavriilidou A, Gentile A, Gerke J, Gerstmans H, Gomez-Escribano JP, González-Salazar LA, Grayson NE, Greco C, Gomez JEG, Guerra S, Flores SG, Gurevich A, Gutiérrez-García K, Hart L, Haslinger K, He B, Hebra T, Hemmann JL, Hindra H, Höing L, Holland DC, Holme JE, Horch T, Hrab P, Hu J, Huynh TH, Hwang JY, Iacovelli R, Iftime D, Iorio M, Jayachandran S, Jeong E, Jing J, Jung JJ, Kakumu Y, Kalkreuter E, Kang KB, Kang S, Kim W, Kim GJ, Kim H, Kim HU, Klapper M, Koetsier RA, Kollten C, Kovács ÁT, Kriukova Y, Kubach N, Kunjapur AM, Kushnareva AK, Kust A, Lamber J, Larralde M, Larsen NJ, Launay AP, Le NT, Lebeer S, Lee BT, Lee K, Lev KL, Li SM, Li YX, Licona-Cassani C, Lien A, Liu J, Lopez JAV, Machushynets NV, Macias MI, Mahmud T, Maleckis M, Martinez-Martinez AM, Mast Y, Maximo MF, McBride CM, McLellan RM, Bhatt KM, Melkonian C, Merrild A, Metsä-Ketelä M, Mitchell DA, Müller AV, Nguyen GS, Nguyen HT, Niedermeyer THJ, O’Hare JH, Ossowicki A, Ostash BO, Otani H, Padva L, Paliyal S, Pan X, Panghal M, Parade DS, Park J, Parra J, Rubio MP, Pham HT, Pidot SJ, Piel J, Pourmohsenin B, Rakhmanov M, Ramesh S, Rasmussen MH, Rego A, Reher R, Rice AJ, Rigolet A, Romero-Otero A, Rosas-Becerra LR, Rosiles PY, Rutz A, Ryu B, Sahadeo LA, Saldanha M, Salvi L, Sánchez-Carvajal E, Santos-Medellin C, Sbaraini N, Schoellhorn SM, Schumm C, Sehnal L, Selem N, Shah AD, Shishido TK, Sieber S, Silviani V, Singh G, Singh H, Sokolova N, Sonnenschein EC, Sosio M, Sowa ST, Steffen K, Stegmann E, Streiff AB, Strüder A, Surup F, Svenningsen T, Sweeney D, Szenei J, Tagirdzhanov A, Tan B, Tarnowski MJ, Terlouw BR, Rey T, Thome NU, Torres Ortega LR, Tørring T, Trindade M, Truman AW, Tvilum M, Udwary DW, Ulbricht C, Vader L, van Wezel GP, Walmsley M, Warnasinghe R, Weddeling HG, Weir ANM, Williams K, Williams SE, Witte TE, Rocca SMW, Yamada K, Yang D, Yang D, Yu J, Zhou Z, Ziemert N, Zimmer L, Zimmermann A, Zimmermann C, van der Hooft JJJ, Linington RG, Weber T, Medema MH.
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Res. 2025 Jan 6;53(D1):D678-D690. doi: 10.1093/nar/gkae1115. PMID: 39657789; PMCID: PMC11701617.
Keil N, Monzó C, McIntyre L, Conesa A.
Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads. Genome Res. 2025 Apr 14;35(4):987-998. doi: 10.1101/gr.280021.124. PMID: 40032587.
Kondratova L, Vallejos CE, Conesa A.
Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics. BMC Genomics. 2025 Feb 20;26(1):169. doi: 10.1186/s12864-025-11309-2. PMID: 39979816; PMCID: PMC11841308.
Vu ED, Wu K, Ghosh S, Mishra R, Bonning BC.
Continuous cell lines derived from the Asian citrus psyllid, Diaphorina citri, harbor viruses and Wolbachia. Sci Rep. 2025 Jan 2;15(1):124. doi: 10.1038/s41598-024-83671-2. PMID: 39747462; PMCID: PMC11696443.
Vu ED, Liu S, Bonning BC.
Phasmavirus-derived genome sequences and endogenous viral element identified in the small hive beetle, Aethina tumida Murray. J Invertebr Pathol. 2025 Mar;209:108265. doi: 10.1016/j.jip.2024.108265. Epub 2024 Dec 14. PMID: 39675695.
Boldbaatar B, Cleary NG, Paoli JE, Lee DW, Altantogtokh D, Matulis GA, Cote N, Fiorenzano J, Etobayeva IV, Kwon JH, Mavian C, Letizia AG, von Fricken ME.
Characterization of Tick-Borne Encephalitis Virus Isolates from Ixodes persulcatus Ticks Collected During 2020 in Selenge, Mongolia.Pathogens. 2024 Dec 10;13(12):1086. doi: 10.3390/pathogens13121086. PMID: 39770346; PMCID: PMC11677234.
Shekhar R, O’Grady T, Keil N, Feswick A, Amador DAM, Tibbetts SA, Flemington EK, Renne R.
High-density resolution of the Kaposi’s sarcoma associated herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing. Nucleic Acids Res. 2024 Jul 22;52(13):7720-7739. doi: 10.1093/nar/gkae540. PMID: 38922687; PMCID: PMC11260491.
Keil N, Monzó C, McIntyre L, Conesa A.
SQANTI-reads: a tool for the quality assessment of long read data in multi-sample lrRNA-seq experiments. bioRxiv [Preprint]. 2024 Sep 17:2024.08.23.609463. doi: 10.1101/2024.08.23.609463. Update in: Genome Res. 2025 Apr 14;35(4):987-998. doi: 10.1101/gr.280021.124. PMID: 39229095; PMCID: PMC11370609.
Sajdeya R, Jugl S, Wang Y, Perez JG, Maloney S, Lopez-Quintero C, Goodin AJ, Winterstein AG, Cook RL.
Reasons for Use and Perceived Effects of Medical Cannabis: A Cross-Sectional Statewide Survey. Med Cannabis Cannabinoids. 2024 Jul 30;7(1):138-148. doi: 10.1159/000540593. PMID: 39474237; PMCID: PMC11521456.
Hiers NM, Li T, Traugot CM, Xie M.
Target-directed microRNA degradation: Mechanisms, significance, and functional implications. Wiley Interdiscip Rev RNA. 2024 Mar-Apr;15(2):e1832. doi: 10.1002/wrna.1832. PMID: 38448799; PMCID: PMC11098282.
Traugot CM, Hiers NM, Li L, Li T, Sheng P, Wang Y, Yao M, Xie M.
An endogenous cluster of target-directed microRNA degradation sites induces decay of distinct microRNA families. bioRxiv [Preprint]. 2024 Dec 13:2024.12.11.627053. doi: 10.1101/2024.12.11.627053. PMID: 39713366; PMCID: PMC11661237.
Kondratova L, Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez Martinez JM, Hunt T, Lagarde J, Liang CE, Li H, Meade MJ, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Çelik MH, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Li JL, Lienhard M, Mikheenko A, Mulligan D, Nip KM, Pertea M, Ritchie ME, Sim AD, Tang AD, Wan YK, Wang C, Wong BY, Yang C, Barnes I, Berry AE, Capella-Gutierrez S, Cousineau A, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Götz S, Hernández-Ferrer C, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Ren X, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Smith ML, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Maehr R, Shen Y, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Au KF, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN.
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Nat Methods. 2024 Jul;21(7):1349-1363. doi: 10.1038/s41592-024-02298-3. Epub 2024 Jun 7. PMID: 38849569; PMCID: PMC11543605.
Kondratova L, Pardo-Palacios FJ, Arzalluz-Luque A, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A.
SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms. Nat Methods. 2024 May;21(5):793-797. doi: 10.1038/s41592-024-02229-2. Epub 2024 Mar 20. PMID: 38509328; PMCID: PMC11093726.
Vu ED, Chiavini BE, Gratton EM, Dolezal AG, Bonning BC.
Representative honey bee viruses do not replicate in the small hive beetle, Aethina tumida Murray. J Invertebr Pathol. 2024 Nov;207:108207. doi: 10.1016/j.jip.2024.108207. Epub 2024 Sep 19. PMID: 39306322.
Vu ED, Iredale ME, Cobb G, Ghosh S, Ellis JD, Bonning BC.
Development of a multiplex real-time quantitative reverse-transcription polymerase chain reaction for the detection of four bee viruses. J Virol Methods. 2024 Jul;328:114953. doi: 10.1016/j.jviromet.2024.114953. Epub 2024 May 15. PMID: 38759872.
Agbodzi B, Sado Yousseu FB, Nemg Simo FB, Kumordjie S, Yeboah C, Mosore MT, Bentil RE, Coatsworth HG, Attram N, Nimo-Paintsil S, Fox AT, Bonney JHK, Ampofo W, Dinglasan RR, Sanders T, Wiley MR, Demanou M, Letizia AG.
Whole genome sequencing of outbreak strains from 2017 to 2018 reveals an endemic clade of dengue 1 virus in Cameroon. Emerg Microbes Infect. 2023 Dec;12(2):2281352. doi: 10.1080/22221751.2023.2281352. Epub 2023 Nov 22. PMID: 37933502; PMCID: PMC10732222.
Dove AS, Dzurny DI, Dees WR, Qin N, Nunez Rodriguez CC, Alt LA, Ellward GL, Best JA, Rudawski NG, Fujii K, Czyż DM.
Silver nanoparticles enhance the efficacy of aminoglycosides against antibiotic-resistant bacteria. Front Microbiol. 2023 Jan 31;13:1064095. doi: 10.3389/fmicb.2022.1064095. PMID: 36798870; PMCID: PMC9927651.
Nguyen LT, Rananaware SR, Yang LG, Macaluso NC, Ocana-Ortiz JE, Meister KS, Pizzano BLM, Sandoval LSW, Hautamaki RC, Fang ZR, Joseph SM, Shoemaker GM, Carman DR, Chang L, Rakestraw NR, Zachary JF, Guerra S, Perez A, Jain PK.
Engineering highly thermostable Cas12b via de novo structural analyses for one-pot detection of nucleic acids. Cell Rep Med. 2023 May 16;4(5):101037. doi: 10.1016/j.xcrm.2023.101037. Epub 2023 May 8. PMID: 37160120; PMCID: PMC10213852.
Ivantsova E, Lopez-Scarim V, Sultan A, English C, Biju A, Souders CL 2nd, Padillo-Anthemides NE, Konig I, Martyniuk CJ.
Evidence for neurotoxicity and oxidative stress in zebrafish embryos/larvae treated with HFPO-DA ammonium salt (GenX). Environ Toxicol Pharmacol. 2023 Nov;104:104315. doi: 10.1016/j.etap.2023.104315. Epub 2023 Nov 19. PMID: 37984673.
Wang Y, Traugot CM, Bubenik JL, Li T, Sheng P, Hiers NM, Fernandez P, Li L, Bian J, Swanson MS, Xie M.
N6-methyladenosine in 7SK small nuclear RNA underlies RNA polymerase II transcription regulation. Mol Cell. 2023 Nov 2;83(21):3818-3834.e7. doi: 10.1016/j.molcel.2023.09.020. Epub 2023 Oct 10. PMID: 37820733; PMCID: PMC10873123.
Kondratova L, Kellish PC, Marsic D, Crosson SM, Choudhury S, Scalabrino ML, Strang CE, Hill J, McCullough KT, Peterson JJ, Fajardo D, Gupte S, Makal V, Kondratov O, Iyer S, Witherspoon CD, Gamlin PD, Zolotukhin S, Boye SL, Boye SE.
Intravitreal injection of a rationally designed AAV capsid library in non-human primate identifies variants with enhanced retinal transduction and neutralizing antibody evasion. Mol Ther. 2023 Dec 6;31(12):3441-3456. doi: 10.1016/j.ymthe.2023.10.001. Epub 2023 Oct 9. PMID: 37814449; PMCID: PMC10727955.
Kondratova L, Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, Li H, Jerryd Meade M, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Hasan Çelik M, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Liang Li J, Lienhard M, Mikheenko A, Mulligan D, Ming Nip K, Pertea M, Ritchie ME, Sim AD, Tang AD, Kei Wan Y, Wang C, Wong BY, Yang C, Barnes I, Berry A, Capella S, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Goetz S, Hernández-Ferrer C, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Laird Smith M, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Fai Au K, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN.
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550582. doi: 10.1101/2023.07.25.550582. Update in: Nat Methods. 2024 Jul;21(7):1349-1363. doi: 10.1038/s41592-024-02298-3. PMID: 37546854; PMCID: PMC10402094.
Maugee C, Berryman D, Barrett J, Liu C, Waldbaum J, Yi D, Xing H, Yokoi F, Saxena S, Li Y.
Motor deficit and lack of overt dystonia in Dlx conditional Dyt1 knockout mice. Behav Brain Res. 2023 Feb 15;439:114221. doi: 10.1016/j.bbr.2022.114221. Epub 2022 Nov 20. PMID: 36417958; PMCID: PMC10364669.
Maugee C, Wilkes BJ, Adury RZ, Berryman D, Concepcion LR, Liu Y, Yokoi F, Li Y, Vaillancourt DE.
Cell-specific Dyt1 ∆GAG knock-in to basal ganglia and cerebellum reveal differential effects on motor behavior and sensorimotor network function. Exp Neurol. 2023 Sep;367:114471. doi: 10.1016/j.expneurol.2023.114471. Epub 2023 Jun 14. PMID: 37321386; PMCID: PMC10695146.
Trantham SJ, Coker MA, Norman S, Crowley E, Berthy J, Byrne BJ, Subramony S, Lou X, Corti M
Perspectives of the Friedreich ataxia community on gene therapy clinical trials Mol Ther Methods Clin Dev. 2023 Dec 18;32(1):101179. doi: 10.1016/j.omtm.2023.101179. PMID: 38261944; PMCID: PMC10797190.
Nguyen LT, Rananaware SR, Yang LG, Macaluso NC, Ocana-Ortiz JE, Meister KS, Pizzano BLM, Sandoval LSW, Hautamaki RC, Fang ZR, Joseph SM, Shoemaker GM, Carman DR, Chang L, Rakestraw NR, Zachary JF, Guerra S, Perez A, Jain PK.
Engineering highly thermostable Cas12b via de novo structural analyses for one-pot detection of nucleic acids Cell Rep Med. 2023 May 16;4(5):101037. Epub 2023 May 8. PMID: 37160120.
Amorín R, Liu L, Moriel P, DiLorenzo N, Lancaster PA, Peñagaricano F.
Maternal diet induces persistent DNA methylation changes in the muscle of beef calves Nat Commun. Sci Rep. 2023 Jan 28;13(1):1587. PMID: 36709351
Mendez-Gomez HR, DeVries A, Castillo P, Stover BD, Qdaisat S, Von Roemeling C, Ogando-Rivas E, Weidert F, McGuiness J, Zhang D, Chung MC, Li D, Zhang C, Marconi C, Campaneria Y, Chardon-Robles J, Grippin A, Karachi A, Thomas N, Huang J, Milner R, Sahay B, Sawyer WG, Ligon JA, Silver N, Simon E, Cleaver B, Wynne K, Hodik M, Molinaro A, Guan J, Kellish P, Doty A, Lee JH, Carrera-Justiz S, Rahman M, Gatica S, Mueller S, Prados M, Ghiaseddin A, Mitchell DA, Sayour EJ.
mRNA aggregates harness danger response for potent cancer immunotherapy. medRxiv. 2023 Mar 17:2023.03.12.23287108. Preprint. PMID: 36993772
Castillo P, Ogando-Rivas E, Geffrard H, Pepe A, Liu R, Nguyen DT, Pedro DI, Zhang D, DeVries A, Qdaisat S, Karachi A, Rahman M, Weidert F, Milner R, Huang J, Silver NL, Ligon J, Li D, Lee JH, Carrera-Justiz S, Mitchell DA, Mendez-Gomez H, Sawyer WG, Sayour EJ.
mRNA challenge predicts brain cancer immunogenicity and response to checkpoint inhibitors. bioRxiv. 2023 Mar 23:2023.03.18.532056. Preprint. PMID: 36993158
Titus-McQuillan JE, Nanni AV, McIntyre LM, Rogers RL
Estimating transcriptome complexities across eukaryotes BMC Genomics. 2023 May 11;24(1):254. PMID: 37170194
Nanni AV, Martinez N, Graze R, Morse A, Newman JRB, Jain V, Vlaho S, Signor S, Nuzhdin SV, Renne R, McIntyre LM.
Sex-Biased Expression Is Associated With Chromatin State in Drosophila melanogaster and Drosophila simulans Mol Biol Evol. 2023 May 2;40(5):msad078. PMID: 37116218
Manohar-Sindhu S, Merfeld-Clauss S, Goddard Y, March KL, Traktuev DO.
Diminished vasculogenesis under inflammatory conditions is mediated by Activin A Angiogenesis. 2023 Mar 29. Online ahead of print. PMID: 36977946
Budamagunta V, Kumar A, Rani A, Bean L, Manohar-Sindhu S, Yang Y, Zhou D, Foster TC.
Effect of peripheral cellular senescence on brain aging and cognitive decline. Aging Cell. 2023 May;22(5):e13817. Epub 2023 Mar 23. PMID: 36959691
Khan S, Kellish P, Connis N, Thummuri D, Wiegand J, Zhang P, Zhang X, Budamagunta V, Hua N, Yang Y, De U, Jin L, Zhang W, Zheng G, Hromas R, Hann C, Zajac-Kaye M, Kaye FJ, Zhou D.
Co-targeting BCL-XL and MCL-1 with DT2216 and AZD8055 synergistically inhibit small-cell lung cancer growth without causing on-target toxicities in mice. Cell Death Discov. 2023 Jan 2;9(1):1. PMID: 36588105
Khan S, Budamagunta V, Zhou D.
Targeting KRAS in pancreatic cancer: Emerging therapeutic strategies. Adv Cancer Res. 2023;159:145-184. Epub 2023 Mar 9. PMID: 37268395
De Maria M, Kroll KJ, Yu F, Nouri MZ, Silva-Sanchez C, Perez JG, Moraga Amador DA, Zhang Y, Walsh MT, Denslow ND.
Endocrine, immune and renal toxicity in male largemouth bass after chronic exposure to glyphosate and Rodeo®. Aquat Toxicol. 2022 May;246:106142. doi: 10.1016/j.aquatox.2022.106142. Epub 2022 Mar 12. PMID: 35306440; PMCID: PMC9007883.
Arboleda JD, Edokpolor KS, Banerjee A, McEachin ZT, Gu J, Kosti A, García PS, Wang ET, Bassell GJ.
Altered Behavioral Responses Show GABA Sensitivity in Muscleblind-Like 2-Deficient Mice: Implications for CNS Symptoms in Myotonic Dystrophy. eNeuro. 2022 Oct 10;9(5):ENEURO.0218-22.2022. doi: 10.1523/ENEURO.0218-22.2022. PMID: 36150891; PMCID: PMC9557336.
Berryman DL, Tang HV, Mendoza J, Yactayo-Chang JP, Li QB, Christensen SA, Hunter CT, Best N, Soubeyrand E, Akhtar TA, Basset GJ, Block AK.
Dedicated farnesyl diphosphate synthases circumvent isoprenoid-derived growth-defense tradeoffs in Zea mays. Plant J. 2022 Oct;112(1):207-220. doi: 10.1111/tpj.15941. Epub 2022 Aug 31. PMID: 35960639.
Kondratova L, de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O’Donoghue S, Orengo C, O’Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J.
A roadmap for the functional annotation of protein families: a community perspective. Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062. PMID: 35961013; PMCID: PMC9374478.
Maugee C, Liu Y, Xing H, Ernst AF, Liu C, Yokoi F, Lakshmana M, Li Y.
Hyperactivity of Purkinje cell and motor deficits in C9orf72 knockout mice. Mol Cell Neurosci. 2022 Jul;121:103756. doi: 10.1016/j.mcn.2022.103756. Epub 2022 Jul 16. PMID: 35843530; PMCID: PMC10369482.
Agbodzi B, Yousseu FBS, Simo FBN, Kumordjie S, Yeboah C, Mosore MT, Bentil RE, Prieto K, Colston SM, Attram N, Nimo-Paintsil S, Fox AT, Bonney JHK, Ampofo W, Coatsworth HG, Dinglasan RR, Wolfe DM, Wiley MR, Demanou M, Letizia AG. Chikungunya viruses containing the A226V mutation detected retrospectively in Cameroon form a new geographical subclade. Int J Infect Dis. 2021 Dec;113:65-73. doi: 10.1016/j.ijid.2021.09.058. Epub 2021 Sep 27. PMID: 34592442.
Denes LT, Kelley CP, Wang ET. Microtubule-based transport is essential to distribute RNA and nascent protein in skeletal muscle. Nat Commun. 2021 Oct 27;12(1):6079. doi: 10.1038/s41467-021-26383-9. PMID: 34707124
Dumeny L, Chantra M, Langaee T, Duong BQ, Zambrano DH, Han F, Lopez-Colon D, Humma JF, Dacosta J, Lovato T, Mei C, Duarte JD, Johnson JA, Peek GJ, Jacobs JP, Bleiweis MS, Cavallari LH. β1-receptor polymorphisms and postoperative junctional ectopic tachycardia in children after cardiac surgery. Clin Transl Sci. 2021 Oct 29. doi: 10.1111/cts.13178. Online ahead of print. PMID: 34713976
Guerra LA, Lteif C, Arwood MJ, McDonough CW, Dumeny L, Desai AA, Cavallari LH, Duarte JD. Genetic polymorphisms in ADRB2 and ADRB1 are associated with differential survival in heart failure patients taking β-blockers. Pharmacogenomics J. 2021 Oct 12. doi: 10.1038/s41397-021-00257-1. Online ahead of print. PMID: 34642472
Ospina OE, Lemmon AR, Dye M, Zdyrski C, Holland S, Stribling D, Kortyna ML, Lemmon EM. Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris). BMC Genomics. 2021 Oct 2;22(1):711. doi: 10.1186/s12864-021-07995-3. PMID: 34600496
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