UFGI Publication Round-up: Week of 11/22/21

UFGI Publication Round-up: Week of 11/22/21

Machine Learning for Prediction of Stable Warfarin Dose in US Latinos and Latin Americans.

Steiner HE, Giles JB, Patterson HK, Feng J, El Rouby N, Claudio K, Marcatto LR, Tavares LC, Galvez JM, Calderon-Ospina CA, Sun X, Hutz MH, Scott SA, Cavallari LH, Fonseca-Mendoza DJ, Duconge J, Botton MR, Santos PCJL, Karnes JH.

Front Pharmacol. 2021 Oct 29;12:749786. doi: 10.3389/fphar.2021.749786. eCollection 2021.

PMID: 34776967

Hidden phylogenomic signal helps elucidate arsenurine silkmoth phylogeny and the evolution of body size and wing shape trade-offs.

Hamilton CA, Winiger N, Rubin JJ, Breinholt J, Rougerie R, Kitching IJ, Barber JR, Kawahara AY.

Syst Biol. 2021 Nov 13:syab090. doi: 10.1093/sysbio/syab090. Online ahead of print.

PMID: 34791485

Human Brain and Blood N-Glycome Profiling in Alzheimer’s Disease and Alzheimer’s Disease-Related Dementias.

Yu L, Huo Z, Yang J, Palma-Gudiel H, Boyle PA, Schneider JA, Bennett DA, Zhao J.

Front Aging Neurosci. 2021 Oct 27;13:765259. doi: 10.3389/fnagi.2021.765259. eCollection 2021.

PMID: 34776937

Pith width, leaf size, and twig thickness.

Larios Mendieta KA, Burleigh JG, Putz FE.

Am J Bot. 2021 Nov 17. doi: 10.1002/ajb2.1800. Online ahead of print.

PMID: 34787901

Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations.

Zhang X, Pandey MK, Wang J, Zhao K, Ma X, Li Z, Zhao K, Gong F, Guo B, Varshney RK, Yin D.

Genome Biol. 2021 Nov 16;22(1):315. doi: 10.1186/s13059-021-02520-x.

PMID: 34784945

Safety and efficacy of cipaglucosidase alfa plus miglustat versus alglucosidase alfa plus placebo in late-onset Pompe disease (PROPEL): an international, randomised, double-blind, parallel-group, phase 3 trial.

Schoser B, Roberts M, Byrne BJ, Sitaraman S, Jiang H, Laforêt P, Toscano A, Castelli J, Díaz-Manera J, Goldman M, van der Ploeg AT, Bratkovic D, Kuchipudi S, Mozaffar T, Kishnani PS; PROPEL Study Group.

Lancet Neurol. 2021 Dec;20(12):1027-1037. doi: 10.1016/S1474-4422(21)00331-8.

PMID: 34800400

Cell lines derived from the small hive beetle, Aethina tumida, express insecticide targets.

Corcoran J, Goodman CL, Saathoff S, Ringbauer JA Jr, Guo Y, Bonning B, Stanley D.

In Vitro Cell Dev Biol Anim. 2021 Nov 18. doi: 10.1007/s11626-021-00633-y. Online ahead of print.

PMID: 34792733

Dependency of human and murine LKB1-inactivated lung cancer on aberrant CRTC-CREB activation.

Zhou X, Li JW, Chen Z, Ni W, Li X, Yang R, Shen H, Liu J, DeMayo FJ, Lu J, Kaye FJ, Wu L.

Elife. 2021 Jun 18;10:e66095. doi: 10.7554/eLife.66095.

PMID: 34142658

Integrative Genomic Analysis of Pediatric Myeloid-Related Acute Leukemias Identifies Novel Subtypes and Prognostic Indicators.

Fornerod M, Ma J, Noort S, Liu Y, Walsh MP, Shi L, Nance S, Liu Y, Wang Y, Song G, Lamprecht T, Easton J, Mulder HL, Yergeau D, Myers J, Kamens JL, Obeng EA, Pigazzi M, Jarosova M, Kelaidi C, Polychronopoulou S, Lamba JK, Baker SD, Rubnitz JE, Reinhardt D, van den Heuvel-Eibrink MM, Locatelli F, Hasle H, Klco JM, Downing JR, Zhang J, Pounds S, Zwaan CM, Gruber TA.

Blood Cancer Discov. 2021 Sep 9;2(6):586-599. doi: 10.1158/2643-3230.BCD-21-0049. eCollection 2021 Nov.

PMID: 34778799


The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation.

Gilbert KJ, Zdraljevic S, Cook DE, Cutter AD, Andersen EC, Baer CF.

Genetics. 2021 Oct 7:iyab166. doi: 10.1093/genetics/iyab166. Online ahead of print.

PMID: 34791202

The SOS Error-Prone DNA Polymerase V Mutasome and β-Sliding Clamp Acting in Concert on Undamaged DNA and during Translesion Synthesis.

Sikand A, Jaszczur M, Bloom LB, Woodgate R, Cox MM, Goodman MF.

Cells. 2021 May 1;10(5):1083. doi: 10.3390/cells10051083.

PMID: 34062858

A Novel Detection Method to Identify Individuals with Alpha-1 Antitrypsin Deficiency: Linking Prescription of COPD Medications with the Patient-Facing Electronic Medical Record.

Lam SW, Strange C, Brantly ML, Stoller JK.

Chronic Obstr Pulm Dis. 2021 Nov 16. doi: 10.15326/jcopdf.2021.0260. Online ahead of print.

PMID: 34784453

Asc-Seurat: analytical single-cell Seurat-based web application.

Pereira WJ, Almeida FM, Conde D, Balmant KM, Triozzi PM, Schmidt HW, Dervinis C, Pappas GJ Jr, Kirst M.

BMC Bioinformatics. 2021 Nov 18;22(1):556. doi: 10.1186/s12859-021-04472-2.

PMID: 34794383

Independent infections of porcine deltacoronavirus among Haitian children.

Lednicky JA, Tagliamonte MS, White SK, Elbadry MA, Alam MM, Stephenson CJ, Bonny TS, Loeb JC, Telisma T, Chavannes S, Ostrov DA, Mavian C, Beau De Rochars VM, Salemi M, Morris JG Jr.

Nature. 2021 Nov 17. doi: 10.1038/s41586-021-04111-z. Online ahead of print.

PMID: 34789872

Exposure to acetochlor impairs swim bladder formation, induces heat shock protein expression, and promotes locomotor activity in zebrafish (Danio rerio) larvae.

Huang T, Wang S, Souders CL 2nd, Ivantsova E, Wengrovitz A, Ganter J, Zhao YH, Cheng H, Martyniuk CJ.

Ecotoxicol Environ Saf. 2021 Nov 15;228:112978. doi: 10.1016/j.ecoenv.2021.112978. Online ahead of print.

PMID: 34794026

Behavioral and developmental toxicity assessment of the strobilurin fungicide fenamidone in zebrafish embryos/larvae (Danio rerio).

Huang T, Souders CL 2nd, Wang S, Ganter J, He J, Zhao YH, Cheng H, Martyniuk CJ.

Ecotoxicol Environ Saf. 2021 Nov 15;228:112966. doi: 10.1016/j.ecoenv.2021.112966. Online ahead of print.

PMID: 34794025

Potential of nicotinamide adenine dinucleotide (NAD) for management of root-knot nematode in tomato.

Regmi H, Abdelsamad N, DiGennaro P, Desaeger J.

J Nematol. 2021 Nov 11;53:e2021-94. doi: 10.21307/jofnem-2021-094. eCollection 2021.

PMID: 34790900

Collection and DNA Detection of Dirofilaria immitis (Rhabditida Onchocercidae), Using a Novel Primer Set, in Wild-Caught Mosquitoes From Gainesville, FL.

Holderman C, Abruzzo NO, Abdelsamad NA, Kaufman PE, DiGennaro PM.

J Med Entomol. 2021 May 15;58(3):1429-1432. doi: 10.1093/jme/tjaa272.

PMID: 33289500

A cloud-based toolbox for the versatile environmental annotation of biodiversity data.

Li R, Ranipeta A, Wilshire J, Malczyk J, Duong M, Guralnick R, Wilson A, Jetz W.

PLoS Biol. 2021 Nov 15;19(11):e3001460. doi: 10.1371/journal.pbio.3001460. Online ahead of print.

PMID: 34780461

Region-Wide Comprehensive Implementation of Roguing Infected Trees, Tree Replacement, and Insecticide Applications Successfully Controls Citrus Huanglongbing.

Yuan X, Chen C, Bassanezi RB, Wu F, Feng Z, Shi D, Li J, Du Y, Zhong L, Zhong B, Lu Z, Song X, Hu Y, Ouyang Z, Liu X, Xie J, Rao X, Wang X, Wu DO, Guan Z, Wang N.

Phytopathology. 2021 Aug;111(8):1361-1368. doi: 10.1094/PHYTO-09-20-0436-R. Epub 2021 Sep 16.

PMID: 33356429

Genetic Control of Splicing at SIRPG Modulates Risk of Type 1 Diabetes.

Smith MJ, Pastor L, Newman JRB, Concannon P.

Diabetes. 2021 Nov 19:db210194. doi: 10.2337/db21-0194. Online ahead of print.

PMID: 34799406

DNMT3A Harboring Leukemia-Associated Mutations Directs Sensitivity to DNA Damage at Replication Forks.

Venugopal K, Feng Y, Nowialis P, Xu H, Shabashvili DE, Berntsen CM, Kaur P, Krajcik KI, Taragjini C, Zaroogian Z, Casellas Román HL, Posada LM, Gunaratne C, Li J, Dupéré-Richer D, Bennett RL, Pondugula S, Riva A, Cogle CR, Opavsky R, Law BK, Bhaduri-McIntosh S, Kubicek S, Staber PB, Licht JD, Bird JE, Guryanova OA.

Clin Cancer Res. 2021 Oct 29. doi: 10.1158/1078-0432.CCR-21-2863. Online ahead of print.

PMID: 34716195

Ancestral Background Is Underreported in Regenerative Engineering.

Ryan H, Bister D, Holliday SA, Boehlein J, Lewis A, Silberman J, Allen JB, Moore E.

Regen Eng Transl Med. 2021 Nov 9:1-5. doi: 10.1007/s40883-021-00237-8. Online ahead of print.

PMID: 34778512

Unraveling somatotopic organization in the human brain using machine learning and adaptive supervoxel-based parcellations.

See KB, Arpin DJ, Vaillancourt DE, Fang R, Coombes SA.

Neuroimage. 2021 Nov 12;245:118710. doi: 10.1016/j.neuroimage.2021.118710. Online ahead of print.

PMID: 34780917