UFGI Publication Round-Up: Week 11/9/2020 – 11/30/2020

UFGI Publication round-up week 11/9

 

Adipose Stem Cell Secretome Markedly Improves Rodent Heart and hiPSC-derived Cardiomyocyte Recovery from Cardioplegic Transport Solution Exposure.

Ellis BW, Traktuev DO, Merfeld-Clauss S, Can UI, Wang M, Bergeron R, Zorlutuna P, March KL.

Stem Cells. 2020 Nov 7. doi: 10.1002/stem.3296. Online ahead of print.

PMID: 33159685

 

Engineering and In Vitro Selection of a Novel AAV3B Variant with High Hepatocyte Tropism and Reduced Seroreactivity.

Biswas M, Marsic D, Li N, Zou C, Gonzalez-Aseguinolaza G, Zolotukhin I, Kumar SRP, Rana J, Butterfield JSS, Kondratov O, de Jong YP, Herzog RW, Zolotukhin S.

Mol Ther Methods Clin Dev. 2020 Oct 4;19:347-361. doi: 10.1016/j.omtm.2020.09.019. eCollection 2020 Dec 11.

PMID: 33145371

 

Megf10 deficiency impairs skeletal muscle stem cell migration and muscle regeneration.

Li C, Vargas-Franco D, Saha M, Davis RM, Manko KA, Draper I, Pacak CA, Kang PB.

FEBS Open Bio. 2020 Nov 7. doi: 10.1002/2211-5463.13031. Online ahead of print.

PMID: 33159715

 

Characterization of AAV-Specific Affinity Ligands: Consequences for Vector Purification and Development Strategies.

Mietzsch M, Smith JK, Yu JC, Banala V, Emmanuel SN, Jose A, Chipman P, Bhattacharya N, McKenna R, Agbandje-McKenna M.

Mol Ther Methods Clin Dev. 2020 Oct 4;19:362-373. doi: 10.1016/j.omtm.2020.10.001. eCollection 2020 Dec 11.

PMID: 33145372

 

Transcriptomic responses from improved murine sepsis models can better mimic human surgical sepsis.

Efron PA, Darden DB, Wang Z, Nacionales DC, Lopez MC, Hawkins RB, Cox MC, Rincon JC, Ungaro R, Dirain ML, Ghita GL, Chen T, Billiar TR, Delano MJ, Leeuwenburgh C, Bihorac A, Brakenridge SC, Moore FA, Mohr AM, Tompkins RG, Brumback BA, Baker HV, Upchurch GR, Moldawer LL.

FASEB J. 2020 Nov 2. doi: 10.1096/fj.202002150R. Online ahead of print.

PMID: 33140449

 

Exercise mitigates sleep-loss-induced changes in glucose tolerance, mitochondrial function, sarcoplasmic protein synthesis, and diurnal rhythms.

Saner NJ, Lee MJ, Kuang J, Pitchford NW, Roach GD, Garnham A, Genders AJ, Stokes T, Schroder EA, Huo Z, Esser KA, Phillips SM, Bishop DJ, Bartlett JD.

Mol Metab. 2020 Oct 30:101110. doi: 10.1016/j.molmet.2020.101110. Online ahead of print.

PMID: 33137489

 

First report of Bipolaris yamadae leaf spot disease on Guinea grass (Panicum maximum) in Florida.

Adhikari A, Wang X, Lane B, Harmon PF, Goss E.

Plant Dis. 2020 Nov 2. doi: 10.1094/PDIS-07-20-1486-PDN. Online ahead of print.

PMID: 33135993

 

Are we forgetting the “proteomics” in multi-omics ecotoxicology?

Liang X, Martyniuk CJ, Simmons DBD.

Comp Biochem Physiol Part D Genomics Proteomics. 2020 Oct 17;36:100751. doi: 10.1016/j.cbd.2020.100751. Online ahead of print.

PMID: 33142247

 

Transcriptome network data in larval zebrafish (Danio rerio) following exposure to the phenylpyrazole fipronil.

Eadie A, Vásquez IC, Liang X, Wang X, Souders CL 2nd, Chehouri JE, Hoskote R, Feswick A, Cowie AM, Loughery JR, Martyniuk CJ.

Data Brief. 2020 Oct 16;33:106413. doi: 10.1016/j.dib.2020.106413. eCollection 2020 Dec.

PMID: 33134444

 

Optimizing Precision of Hypertension Care to Maximize Blood Pressure Control (OPTI-BP): A Pilot Study Utilizing a Smartphone App to Incorporate Plasma Renin Activity Testing.

Mehanna M, Chen YE, Gong Y, Handberg E, Roth B, De Leon J, Smith SM, Harrell JG, Cooper-DeHoff RM.

Clin Transl Sci. 2020 Nov 3. doi: 10.1111/cts.12922. Online ahead of print.

PMID: 33142006

 

 

UFGI Publication round-up week 11/16

 

Effects of injectable calcitriol on mineral metabolism and postpartum health and performance in dairy cows.

Vieira-Neto A, Negro G, Zimpel R, Poindexter M, Lopes F Jr, Thatcher WW, Nelson CD, Santos JEP.

J Dairy Sci. 2020 Nov 5:S0022-0302(20)30890-0. doi: 10.3168/jds.2020-18448. Online ahead of print.

PMID: 33162071

 

Effect of duration of exposure to diets differing in dietary cation-anion difference on Ca metabolism after a parathyroid hormone challenge in dairy cows.

Vieira-Neto A, Leão IMR, Prim JG, Silva ACM, Nehme Marinho M, Zimpel R, Etheve S, Nelson CD, Santos JEP.

J Dairy Sci. 2020 Nov 5:S0022-0302(20)30914-0. doi: 10.3168/jds.2020-19127. Online ahead of print.

PMID: 33162070

 

Efficient CRISPR/Cas9 genome editing with Citrus embryogenic cell cultures.

Dutt M, Mou Z, Zhang X, Tanwir SE, Grosser JW.

BMC Biotechnol. 2020 Nov 10;20(1):58. doi: 10.1186/s12896-020-00652-9.

PMID: 33167938

 

Designing a bioelectronic treatment for Type 1 diabetes: targeted parasympathetic modulation of insulin secretion.

Dirr EW, Urdaneta ME, Patel Y, Johnson RD, Campbell-Thompson M, Otto KJ.

Bioelectron Med (Lond). 2020 Jul;3(2):17-31. doi: 10.2217/bem-2020-0006. Epub 2020 Jul 28.

PMID: 33169091

 

Correction to: Genes associated with survival of female bovine blastocysts produced in vivo.

Zolini AM, Block J, Rabaglino MB, Rincon G, Hoelker M, Bromfield JJ, Salilew-Wondim D, Hansen PJ.

Cell Tissue Res. 2020 Nov 10. doi: 10.1007/s00441-020-03293-8. Online ahead of print.

PMID: 33170338

 

Dense sampling of bird diversity increases power of comparative genomics.

Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Parody-Merino ÁM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G.

Nature. 2020 Nov;587(7833):252-257. doi: 10.1038/s41586-020-2873-9. Epub 2020 Nov 11.

PMID: 33177665

 

Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data.

Bian J, Lyu T, Loiacono A, Viramontes TM, Lipori G, Guo Y, Wu Y, Prosperi M, George TJ, Harle CA, Shenkman EA, Hogan W.

J Am Med Inform Assoc. 2020 Nov 9:ocaa245. doi: 10.1093/jamia/ocaa245. Online ahead of print.

PMID: 33166397

 

Myeloma Cells Deplete Bone Marrow Glutamine and Inhibit Osteoblast Differentiation Limiting Asparagine Availability.

Chiu M, Toscani D, Marchica V, Taurino G, Costa F, Bianchi MG, Andreoli R, Franceschi V, Storti P, Burroughs-Garcia J, Eufemiese RA, Dalla Palma B, Campanini N, Martella E, Mancini C, Shan J, Kilberg MS, D’Amico G, Dander E, Agnelli L, Pruneri G, Donofrio G, Bussolati O, Giuliani N.

Cancers (Basel). 2020 Nov 5;12(11):E3267. doi: 10.3390/cancers12113267.

PMID: 33167336

 

Applying genome-wide CRISPR to identify known and novel genes and pathways that modulate formaldehyde toxicity.

Zhao Y, Wei L, Tagmount A, Loguinov A, Sobh A, Hubbard A, McHale CM, Chang CJ, Vulpe CD, Zhang L.

Chemosphere. 2020 Oct 22:128701. doi: 10.1016/j.chemosphere.2020.128701. Online ahead of print.

PMID: 33189395

 

IL-18 mediates sickle cell cardiomyopathy and ventricular arrhythmias.

Gupta A, Fei YD, Kim TY, Xie A, Batai K, Greener I, Tang H, Ciftci-Yilmaz S, Juneman EB, Indik JH, Shi G, Christensen J, Gupta G, Hillery CA, Kansal M, Parikh DS, Zhou T, Yuan JX, Kanthi Y, Bronk P, Koren G, Kittles R, Duarte J, Garcia JGN, Machado RF, Dudley SC, Choi BR, Desai AA.

Blood. 2020 Nov 12:blood.2020005944. doi: 10.1182/blood.2020005944. Online ahead of print.

PMID: 33181835

 

Acceptability, Feasibility, and Utility of Integrating Pharmacogenetic Testing into a Child Psychiatry Clinic.

Claudio-Campos K, Padrón A, Jerkins G, Nainaparampil J, Nelson R, Martin A, Wiisanen K, Smith DM, Strekalova Y, Marsiske M, Cicali EJ, Cavallari LH, Mathews CA.

Clin Transl Sci. 2020 Nov 9. doi: 10.1111/cts.12914. Online ahead of print.

PMID: 33166056

 

Untargeted Metabolomics of Arabidopsis Stomatal Immunity.

David L, Kang J, Chen S.

Methods Mol Biol. 2021;2200:413-424. doi: 10.1007/978-1-0716-0880-7_20.

PMID: 33175390

 

Nicotinic Acetylcholine Receptor Accessory Subunits Determine the Activity Profile of Epibatidine Derivatives.

Corrie LW, Stokes C, Wilkerson JL, Carroll FI, McMahon LR, Papke RL.

Mol Pharmacol. 2020 Oct;98(4):328-342. doi: 10.1124/molpharm.120.000037. Epub 2020 Jul 20.

PMID: 32690626

 

Diverse Mechanisms and Circuitry for Global Regulation by the RNA-Binding Protein CsrA.

Pourciau C, Lai YJ, Gorelik M, Babitzke P, Romeo T.

Front Microbiol. 2020 Oct 27;11:601352. doi: 10.3389/fmicb.2020.601352. eCollection 2020.

PMID: 33193284

 

 

 

UFGI Publication round-up week 11/23

 

Anti-VEGF-R2 Aptamer and RGD Peptide Synergize in a Bifunctional Hydrogel for Enhanced Angiogenic Potential.

Roy T, James BD, Allen JB.

Macromol Biosci. 2020 Nov 16:e2000337. doi: 10.1002/mabi.202000337. Online ahead of print.

PMID: 33191671

 

Expression of SARS-CoV-2 Entry Factors in the Pancreas of Normal Organ Donors and Individuals with COVID-19.

Kusmartseva I, Wu W, Syed F, Van Der Heide V, Jorgensen M, Joseph P, Tang X, Candelario-Jalil E, Yang C, Nick H, Harbert JL, Posgai AL, Paulsen JD, Lloyd R, Cechin S, Pugliese A, Campbell-Thompson M, Vander Heide RS, Evans-Molina C, Homann D, Atkinson MA.

Cell Metab. 2020 Nov 13:S1550-4131(20)30600-8. doi: 10.1016/j.cmet.2020.11.005. Online ahead of print.

PMID: 33207244

 

When the Capsid Meets the Promoter: A New Insight into Transgene Expression from Adeno-Associated Virus Vectors.

Srivastava A.

Hum Gene Ther. 2020 Nov;31(21-22):1144-1145. doi: 10.1089/hum.2020.29138.asr.

PMID: 33200964

 

Herpes Simplex Virus 1 microRNA miR-H8 is Dispensable for Latency and Reactivation in Vivo.

Barrozo ER, Nakayama S, Singh P, Neumann DM, Bloom DC.

J Virol. 2020 Nov 18:JVI.02179-20. doi: 10.1128/JVI.02179-20. Online ahead of print.

PMID: 33208453

 

Herpes Simplex Virus 1 Strains 17syn ⁺ and KOS(M) Differ Greatly in Their Ability To Reactivate from Human Neurons In Vitro.

Grams TR, Edwards TG, Bloom DC.

J Virol. 2020 Jul 16;94(15):e00796-20. doi: 10.1128/JVI.00796-20. Print 2020 Jul 16.

PMID: 32461310

 

Deletion of Herpes Simplex Virus 1 MicroRNAs miR-H1 and miR-H6 Impairs Reactivation.

Barrozo ER, Nakayama S, Singh P, Vanni EAH, Arvin AM, Neumann DM, Bloom DC.

J Virol. 2020 Jul 16;94(15):e00639-20. doi: 10.1128/JVI.00639-20. Print 2020 Jul 16.

PMID: 32295910

 

Innovations in Geroscience to enhance mobility in older adults.

Anton SD, Cruz-Almeida Y, Singh A, Alpert J, Bensadon B, Cabrera M, Clark DJ, Ebner NC, Esser KA, Fillingim RB, Goicolea SM, Han SM, Kallas H, Johnson A, Leeuwenburgh C, Liu AC, Manini TM, Marsiske M, Moore F, Qiu P, Mankowski RT, Mardini M, McLaren C, Ranka S, Rashidi P, Saini S, Sibille KT, Someya S, Wohlgemuth S, Tucker C, Xiao R, Pahor M.

Exp Gerontol. 2020 Oct 22;142:111123. doi: 10.1016/j.exger.2020.111123. Online ahead of print.

PMID: 33191210

 

Immunomodulatory Dual-Sized Microparticle System Conditions Human Antigen Presenting Cells Into a Tolerogenic Phenotype In Vitro and Inhibits Type 1 Diabetes-Specific Autoreactive T Cell Responses.

Brusko MA, Stewart JM, Posgai AL, Wasserfall CH, Atkinson MA, Brusko TM, Keselowsky BG.

Front Immunol. 2020 Oct 22;11:574447. doi: 10.3389/fimmu.2020.574447. eCollection 2020.

PMID: 33193362

 

Potassium Glutamate and Glycine Betaine Induce Self-Assembly of the PCNA and β Sliding Clamps.

Purohit A, Douma LG, Bloom LB, Levitus M.

Biophys J. 2020 Nov 19:S0006-3495(20)30901-2. doi: 10.1016/j.bpj.2020.11.013. Online ahead of print.

PMID: 33221249

 

Red Imported Fire Ant (Solenopsis invicta) Chemosensory Proteins Are Expressed in Tissue, Developmental, and Caste-Specific Patterns.

Wanchoo A, Zhang W, Ortiz-Urquiza A, Boswell J, Xia Y, Keyhani NO.

Front Physiol. 2020 Oct 23;11:585883. doi: 10.3389/fphys.2020.585883. eCollection 2020.

PMID: 33192598

 

Disease Diagnostics and Potential Coinfections by Vibrio coralliilyticus During an Ongoing Coral Disease Outbreak in Florida.

Ushijima B, Meyer JL, Thompson S, Pitts K, Marusich MF, Tittl J, Weatherup E, Reu J, Wetzell R, Aeby GS, Häse CC, Paul VJ.

Front Microbiol. 2020 Oct 26;11:569354. doi: 10.3389/fmicb.2020.569354. eCollection 2020.

PMID: 33193161

 

Arginine kinetics are altered in a pilot sample of adolescents and young adults with Barth syndrome.

Cade WT, Bohnert KL, Bittel AJ, Chacko SJ, Patterson BW, Pacak CA, Byrne BJ, Vernon HJ, Reeds DN.

Mol Genet Metab Rep. 2020 Nov 4;25:100675. doi: 10.1016/j.ymgmr.2020.100675. eCollection 2020 Dec.

PMID: 33204638

 

Genome-wide variation and transcriptional changes in diverse developmental processes underlie the rapid evolution of seasonal adaptation.

Dowle EJ, Powell THQ, Doellman MM, Meyers PJ, Calvert MB, Walden KKO, Robertson HM, Berlocher SH, Feder JL, Hahn DA, Ragland GJ.

Proc Natl Acad Sci U S A. 2020 Sep 22;117(38):23960-23969. doi: 10.1073/pnas.2002357117. Epub 2020 Sep 8.

PMID: 32900926

 

SOCS, Intrinsic Virulence Factors, and Treatment of COVID-19.

Johnson HM, Lewin AS, Ahmed CM.

Front Immunol. 2020 Oct 23;11:582102. doi: 10.3389/fimmu.2020.582102. eCollection 2020.

PMID: 33193390

 

An Erythritol-Sweetened Beverage Induces Satiety and Suppresses Ghrelin Compared to Aspartame in Healthy Non-Obese Subjects: A Pilot Study.

Sorrentino ZA, Smith G, Palm L, Motwani K, Butterfield J, Archer C, Henderson R, Heldermon C, Gautam S, Brantly ML.

Cureus. 2020 Nov 10;12(11):e11409. doi: 10.7759/cureus.11409.

PMID: 33194505

 

Prevalence of AAV3 capsid binding and neutralizing antibodies in healthy and individuals with hemophilia B from India.

Daniel HDJ, Kumar S, Kannangai R, Lakshmi KM, Agbandje-McKenna M, Coleman KE, Srivastava A, Srivastava A, Abraham AM.

Hum Gene Ther. 2020 Nov 18. doi: 10.1089/hum.2020.258. Online ahead of print.

PMID: 33207962

Authors’ Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis”.

Mavian C, Marini S, Prosperi M, Salemi M.

JMIR Public Health Surveill. 2020 Nov 11;6(4):e24661. doi: 10.2196/24661.

PMID: 33174844

 

 

UFGI Publication round-up week 11/30

Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness.

Leite RN, Kimball RT, Braun EL, Derryberry EP, Hosner PA, Derryberry GE, Anciães M, McKay JS, Aleixo A, Ribas CC, Brumfield RT, Cracraft J.

Mol Phylogenet Evol. 2020 Nov 17:107013. doi: 10.1016/j.ympev.2020.107013. Online ahead of print.

PMID: 33217578

 

Improved deferred antagonism technique for detecting antibiosis.

Klein JM, Stockwell VO, Minsavage GV, Vallad GE, Goss EM, Jones JB.

Lett Appl Microbiol. 2020 Oct;71(4):330-336. doi: 10.1111/lam.13339. Epub 2020 Jul 14.

PMID: 32506499

 

Climate, urbanization, and species traits interactively drive flowering duration.

Li D, Barve N, Brenskelle L, Earl K, Barve V, Belitz MW, Doby J, Hantak MM, Oswald JA, Stucky BJ, Walters M, Guralnick RP.

Glob Chang Biol. 2020 Nov 28. doi: 10.1111/gcb.15461. Online ahead of print.

PMID: 33249694

 

Digital biodiversity data sets reveal breeding phenology and its drivers in a widespread North American mammal.

McLean BS, Guralnick RP.

Ecology. 2020 Nov 23:e03258. doi: 10.1002/ecy.3258. Online ahead of print.

PMID: 33226631

 

Site-specific modifications to AAV8 capsid yields enhanced brain transduction in the neonatal MPS IIIB mouse.

Gilkes JA, Judkins BL, Herrera BN, Mandel RJ, Boye SL, Boye SE, Srivastava A, Heldermon CD.

Gene Ther. 2020 Nov 26. doi: 10.1038/s41434-020-00206-w. Online ahead of print.

PMID: 33244179

 

Valproate reverses mania-like behaviors in mice via preferential targeting of HDAC2.

Logan RW, Ozburn AR, Arey RN, Ketchesin KD, Winquist A, Crain A, Tobe BTD, Becker-Krail D, Jarpe MB, Xue X, Zong W, Huo Z, Parekh PK, Zhu X, Fitzgerald E, Zhang H, Oliver-Smith J, DePoy LM, Hildebrand MA, Snyder EY, Tseng GC, McClung CA.

Mol Psychiatry. 2020 Nov 24. doi: 10.1038/s41380-020-00958-2. Online ahead of print.

PMID: 33235333

 

S-Nitroso-Proteome Revealed in Stomatal Guard Cell Response to Flg22.

Lawrence SR 2nd, Gaitens M, Guan Q, Dufresne C, Chen S.

Int J Mol Sci. 2020 Mar 1;21(5):1688. doi: 10.3390/ijms21051688.

PMID: 32121556

 

Growth charts in Cockayne syndrome type 1 and type 2.

Baer S, Tuzin N, Kang PB, Mohammed S, Kubota M, van Ierland Y, Busa T, Rossi M, Morel G, Michot C, Baujat G, Durand M, Obringer C, Le May N, Calmels N, Laugel V.

Eur J Med Genet. 2020 Nov 20:104105. doi: 10.1016/j.ejmg.2020.104105. Online ahead of print.

PMID: 33227433