UFGI Publication Round-Up: Week of 9/23/24

Becker AL, Crowl AA, Luteyn JL, Chanderbali AS, Judd WS, Manos PS, Soltis DE, Smith SA, Goncalves DJP, Dick CW, Weaver WN, Soltis PS, Cellinese N, Fritsch PW.

Mol Phylogenet Evol. 2024 Sep 15:108202. doi: 10.1016/j.ympev.2024.108202. Online ahead of print.

PMID: 39288897

Genome-wide gene network uncover temporal and spatial changes of genes in auxin homeostasis during fruit development in strawberry (F. × ananassa).

Jang YJ, Kim T, Lin M, Kim J, Begcy K, Liu Z, Lee S.

BMC Plant Biol. 2024 Sep 20;24(1):876. doi: 10.1186/s12870-024-05577-5.

PMID: 39304822

Neuroimaging and Biofluid Biomarkers across Race and Ethnicity in Older Adults across the Spectrum of Cognition.

Wang WE, Asken BM, DeSimone JC, Levy SA, Barker W, Fiala JA, Velez-Uribe I, Curiel Cid RE, Rósselli R, Marsiske M, Adjouadi M, Loewenstein DA, Duara R, Smith GE, Armstrong MJ, Barnes LL, Vaillancourt DE, Coombes SA.

Ageing Res Rev. 2024 Sep 19:102507. doi: 10.1016/j.arr.2024.102507. Online ahead of print.

PMID: 39306249

Multimodal functional deep learning for multiomics data.

Zhou Y, Geng P, Zhang S, Xiao F, Cai G, Chen L; Alzheimer’s Disease Neuroimaging Initiative; Lu Q.

Brief Bioinform. 2024 Jul 25;25(5):bbae448. doi: 10.1093/bib/bbae448.

PMID: 39285512

Whole-genome sequencing and analysis of Streptococcus iniae strain isolated from the brain of tilapia (Oreochromis sp.).

Safwat A, Ellward GL, Pouder DB, Yanong RPE, Czyż DM.

Microbiol Resour Announc. 2024 Sep 16:e0049324. doi: 10.1128/mra.00493-24. Online ahead of print.

PMID: 39283126

RAB32 mutation in Parkinson’s disease – Author’s reply.

Farrer MJ.

Lancet Neurol. 2024 Oct;23(10):963-964. doi: 10.1016/S1474-4422(24)00351-X.

PMID: 39304255

Amylase-associated genetic pattern in Xanthomonas euvesicatoria on pepper.

Subedi A, Iruegas-Bocardo F, Luo L, Minsavage GV, Roberts PD, Jones JB, Goss EM.

Appl Environ Microbiol. 2024 Sep 18:e0131324. doi: 10.1128/aem.01313-24. Online ahead of print.

PMID: 39291986

Calibrating the genomic clock of modern birds using fossils.

Claramunt S, Braun EL, Cracraft J, Fjeldså J, Ho SYW, Houde P, Nguyen JMT, Stiller J.

Proc Natl Acad Sci U S A. 2024 Sep 24;121(39):e2405887121. doi: 10.1073/pnas.2405887121. Epub 2024 Sep 16.

PMID: 39284060

Genetic variation drives cancer cell adaptation to ECM stiffness.

Wang TC, Sawhney S, Morgan D, Bennett RL, Rashmi R, Estecio MR, Brock A, Singh I, Baer CF, Licht JD, Lele TP.

Proc Natl Acad Sci U S A. 2024 Sep 24;121(39):e2403062121. doi: 10.1073/pnas.2403062121. Epub 2024 Sep 20.

PMID: 39302966

Conserved linear motif within the immediate early protein ORF45 promotes its engagement with KSHV lytic cycle-promoting forkhead transcription factors, FOXK1 and FOXK2.

Palmer M, Leo A, Atyeo N, Tomacari C, Nguyen X, Papp B.

J Virol. 2024 Sep 17:e0088624. doi: 10.1128/jvi.00886-24. Online ahead of print.

PMID: 39287387

Pressing needs and recent advances to enhance production of embryos in vitro in cattle.

Hansen PJ.

Anim Reprod. 2024 Aug 26;21(3):e20240036. doi: 10.1590/1984-3143-AR2024-0036. eCollection 2024.

PMID: 39286365

Representative honey bee viruses do not replicate in the small hive beetle, Aethina tumida Murray.

Vu ED, Chiavini BE, Gratton EM, Dolezal AG, Bonning BC.

J Invertebr Pathol. 2024 Sep 19:108207. doi: 10.1016/j.jip.2024.108207. Online ahead of print.

PMID: 39306322

Progress Toward a Gene Therapy for Arthritis.

Evans CH, Ghivizzani SC, Robbins PD.

J Am Acad Orthop Surg. 2024 Sep 11. doi: 10.5435/JAAOS-D-24-00831. Online ahead of print.

PMID: 39284030

Consensus guidance for monitoring individuals with islet autoantibody-positive pre-stage 3 type 1 diabetes.

Phillip M, Achenbach P, Addala A, Albanese-O’Neill A, Battelino T, Bell KJ, Besser REJ, Bonifacio E, Colhoun HM, Couper JJ, Craig ME, Danne T, de Beaufort C, Dovc K, Driscoll KA, Dutta S, Ebekozien O, Larsson HE, Feiten DJ, Frohnert BI, Gabbay RA, Gallagher MP, Greenbaum CJ, Griffin KJ, Hagopian W, Haller MJ, Hendrieckx C, Hendriks E, Holt RIG, Hughes L, Ismail HM, Jacobsen LM, Johnson SB, Kolb LE, Kordonouri O, Lange K, Lash RW, Lernmark Å, Libman I, Lundgren M, Maahs DM, Marcovecchio ML, Mathieu C, Miller KM, O’Donnell HK, Oron T, Patil SP, Pop-Busui R, Rewers MJ, Rich SS, Schatz DA, Schulman-Rosenbaum R, Simmons KM, Sims EK, Skyler JS, Smith LB, Speake C, Steck AK, Thomas NPB, Tonyushkina KN, Veijola R, Wentworth JM, Wherrett DK, Wood JR, Ziegler AG, DiMeglio LA.

Diabetologia. 2024 Sep;67(9):1731-1759. doi: 10.1007/s00125-024-06205-5.

PMID: 38910151

An integrative framework reveals widespread gene flow during the early radiation of oaks and relatives in Quercoideae (Fagaceae).

Liu SY, Yang YY, Tian Q, Yang ZY, Li SF, Valdes PJ, Farnsworth A, Kates HR, Siniscalchi CM, Guralnick RP, Soltis DE, Soltis PS, Stull GW, Folk RA, Yi TS.

J Integr Plant Biol. 2024 Sep 19. doi: 10.1111/jipb.13773. Online ahead of print.

PMID: 39297574

Berberine potentiates liver inflammation and fibrosis in the PI*Z hAAT transgenic murine model.

Lu Y, Mohammad NS, Lee J, Aranyos AM, Serban KA, Brantly ML.

PLoS One. 2024 Sep 19;19(9):e0310524. doi: 10.1371/journal.pone.0310524. eCollection 2024.

PMID: 39298444

The unappreciated role of developing B cells in chronic gammaherpesvirus infections.

Wang Y, Feswick A, Apostolou V, Tibbetts SA.

PLoS Pathog. 2024 Sep 19;20(9):e1012445. doi: 10.1371/journal.ppat.1012445. eCollection 2024 Sep.

PMID: 39298520

Corrigendum: Simultaneous extraction and detection of peptides, steroids, and proteins in small tissue samples.

Lu C, Peng D, Erandani WCKU, Mitchell K, Martyniuk CJ, Trudeau VL.

Front Endocrinol (Lausanne). 2024 Sep 5;15:1476509. doi: 10.3389/fendo.2024.1476509. eCollection 2024.

PMID: 39301318

Toxicity Risks Associated With the Beta-Blocker Metoprolol in Marine and Freshwater Organisms: A Review.

Love D, Slovisky M, Costa KA, Megarani D, Mehdi Q, Colombo V, Ivantsova E, Subramaniam K, Bowden JA, Bisesi JH Jr, Martyniuk CJ.

Environ Toxicol Chem. 2024 Sep 18. doi: 10.1002/etc.5981. Online ahead of print.

PMID: 39291828

Assessment of soil bacterial communities in integrated crop production systems within the Amazon Biome, Brazil: a comparative study.

do Carmo KB, Dias R, de Quadros PD, Berber GCM, Bourscheidt MLB, de Farias Neto AL, Dos Santos Weber OL, Triplett EW, Ferreira A.

Braz J Microbiol. 2024 Sep;55(3):2815-2825. doi: 10.1007/s42770-024-01352-8. Epub 2024 May 2.

PMID: 38696039

An average-case efficient two-stage algorithm for enumerating all longest common substrings of minimum length k between genome pairs.

Prosperi M, Marini S, Boucher C.

Proc (IEEE Int Conf Healthc Inform). 2024 Jun;2024:93-102. doi: 10.1109/ichi61247.2024.00020. Epub 2024 Aug 22.

PMID: 39308639

Population Digital Health: Continuous Health Monitoring and Profiling at Scale.

Hossein Motlagh N, Zuniga A, Thi Nguyen N, Flores H, Wang J, Tarkoma S, Prosperi M, Helal S, Nurmi P.

Online J Public Health Inform. 2024 Sep 10. doi: 10.2196/60261. Online ahead of print.

PMID: 39300916

Toward life without sickle cell disease.

Davé UP, Bungert J.

Mol Ther. 2024 Sep 17:S1525-0016(24)00590-2. doi: 10.1016/j.ymthe.2024.09.004. Online ahead of print.

PMID: 39293432

Proteome-scale tissue mapping using mass spectrometry based on label-free and multiplexed workflows.

Kwon Y, Woo J, Yu F, Williams SM, Markillie LM, Moore RJ, Nakayasu ES, Chen J, Campbell-Thompson M, Mathews CE, Nesvizhskii AI, Qian WJ, Zhu Y.

Mol Cell Proteomics. 2024 Sep 20:100841. doi: 10.1016/j.mcpro.2024.100841. Online ahead of print.

PMID: 39307423