UFGI Publication Round-up: Week of 2/19/24

Chekka LMS, Tantawy M, Langaee T, Wang D, Renne R, Chapman AB, Gums JG, Boerwinkle E, Cooper-DeHoff RM, Johnson JA.

J Am Heart Assoc. 2024 Feb 14:e032433. doi: 10.1161/JAHA.123.032433. Online ahead of print.

PMID: 38353215

Humans in the loop: Community science and machine learning synergies for overcoming herbarium digitization bottlenecks.

Guralnick R, LaFrance R, Denslow M, Blickhan S, Bouslog M, Miller S, Yost J, Best J, Paul DL, Ellwood E, Gilbert E, Allen J.

Appl Plant Sci. 2024 Jan 3;12(1):e11560. doi: 10.1002/aps3.11560. eCollection 2024 Jan-Feb.

PMID: 38369981

FloraTraiter: Automated parsing of traits from descriptive biodiversity literature.

Folk RA, Guralnick RP, LaFrance RT.

Appl Plant Sci. 2024 Jan 18;12(1):e11563. doi: 10.1002/aps3.11563. eCollection 2024 Jan-Feb.

PMID: 38369975

The bii4africa dataset of faunal and floral population intactness estimates across Africa’s major land uses.

Clements HS, Do Linh San E, Hempson G, Linden B, Maritz B, Monadjem A, Reynolds C, Siebert F, Stevens N, Biggs R, De Vos A, Blanchard R, Child M, Esler KJ, Hamann M, Loft T, Reyers B, Selomane O, Skowno AL, Tshoke T, Abdoulaye D, Aebischer T, Aguirre-Gutiérrez J, Alexander GJ, Ali AH, Allan DG, Amoako EE, Angedakin S, Aruna E, Avenant NL, Badjedjea G, Bakayoko A, Bamba-Kaya A, Bates MF, Bates PJJ, Belmain SR, Bennitt E, Bradley J, Brewster CA, Brown MB, Brown M, Bryja J, Butynski TM, Carvalho F, Channing A, Chapman CA, Cohen C, Cords M, Cramer JD, Cronk N, Cunneyworth PMK, Dalerum F, Danquah E, Davies-Mostert HT, de Blocq AD, De Jong YA, Demos TC, Denys C, Djagoun CAMS, Doherty-Bone TM, Drouilly M, du Toit JT, Ehlers Smith DA, Ehlers Smith YC, Eiseb SJ, Fashing PJ, Ferguson AW, Fernández-García JM, Finckh M, Fischer C, Gandiwa E, Gaubert P, Gaugris JY, Gibbs DJ, Gilchrist JS, Gil-Sánchez JM, Githitho AN, Goodman PS, Granjon L, Grobler JP, Gumbi BC, Gvozdik V, Harvey J, Hauptfleisch M, Hayder F, Hema EM, Herbst M, Houngbédji M, Huntley BJ, Hutterer R, Ivande ST, Jackson K, Jongsma GFM, Juste J, Kadjo B, Kaleme PK, Kamugisha E, Kaplin BA, Kato HN, Kiffner C, Kimuyu DM, Kityo RM, Kouamé NG, Kouete T M, le Roux A, Lee ATK, Lötter MC, Lykke AM, MacFadyen DN, Macharia GP, Madikiza ZJK, Mahlaba TAM, Mallon D, Mamba ML, Mande C, Marchant RA, Maritz RA, Markotter W, McIntyre T, Measey J, Mekonnen A, Meller P, Melville HI, Mganga KZ, Mills MGL, Minnie L, Missoup AD, Mohammad A, Moinde NN, Moise BFE, Monterroso P, Moore JF, Musila S, Nago SGA, Namoto MW, Niang F, Nicolas V, Nkenku JB, Nkrumah EE, Nono GL, Norbert MM, Nowak K, Obitte BC, Okoni-Williams AD, Onongo J, O’Riain MJ, Osinubi ST, Parker DM, Parrini F, Peel MJS, Penner J, Pietersen DW, Plumptre AJ, Ponsonby DW, Porembski S, Power RJ, Radloff FGT, Rambau RV, Ramesh T, Richards LR, Rödel MO, Rollinson DP, Rovero F, Saleh MA, Schmiedel U, Schoeman MC, Scholte P, Serfass TL, Shapiro JT, Shema S, Siebert SJ, Slingsby JA, Sliwa A, Smit-Robinson HA, Sogbohossou EA, Somers MJ, Spawls S, Streicher JP, Swanepoel L, Tanshi I, Taylor PJ, Taylor WA, Te Beest M, Telfer PT, Thompson DI, Tobi E, Tolley KA, Turner AA, Twine W, Van Cakenberghe V, Van de Perre F, van der Merwe H, van Niekerk CJG, van Wyk PCV, Venter JA, Verburgt L, Veron G, Vetter S, Vorontsova MS, Wagner TC, Webala PW, Weber N, Weier SM, White PA, Whitecross MA, Wigley BJ, Willems FJ, Winterbach CW, Woodhouse GM.

Sci Data. 2024 Feb 12;11(1):191. doi: 10.1038/s41597-023-02832-6.

PMID: 38346970

Draft genomes announcement of Vietnamese Xanthomonas euvesicatoria strains causing bacterial spot on pepper.

Subedi A, Nga NTT, Tien DTK, Minsavage GV, Roberts PD, Goss EM, Jones JB.

Access Microbiol. 2024 Jan 22;6(1):000741.v3. doi: 10.1099/acmi.0.000741.v3. eCollection 2024.

PMID: 38361655

Tissue-specific proteome profile analysis reveals regulatory and stress responsive networks in passion fruit during storage.

Garcia E, Koh J, Wu X, Sarkhosh A, Liu T.

Sci Rep. 2024 Feb 12;14(1):3564. doi: 10.1038/s41598-024-52557-8.

PMID: 38346991

37665420

Longitudinal changes of swallowing safety and efficiency in infants with spinal muscular atrophy who received disease modifying therapies.

Leon-Astudillo C, Brooks O, Salabarria SM, Coker M, Corti M, Lammers J, Plowman EK, Byrne BJ, Smith BK.

Pediatr Pulmonol. 2024 Feb 15. doi: 10.1002/ppul.26919. Online ahead of print.

PMID: 38358081

Different aspects of failing to recover from proactive semantic interference predicts rate of progression from amnestic mild cognitive impairment to dementia.

Curiel Cid RE, Crocco EA, Duara R, Vaillancourt D, Asken B, Armstrong MJ, Adjouadi M, Georgiou M, Marsiske M, Wang WI, Rosselli M, Barker WW, Ortega A, Hincapie D, Gallardo L, Alkharboush F, DeKosky S, Smith G, Loewenstein DA.

Front Aging Neurosci. 2024 Jan 31;16:1336008. doi: 10.3389/fnagi.2024.1336008. eCollection 2024.

PMID: 38357533

Reply to Drs. Reggiani and Murgia.

Blemker SS, Brooks SV, Esser KA, Saul KR.

J Appl Physiol (1985). 2024 Feb 1;136(2):439. doi: 10.1152/japplphysiol.00037.2024.

PMID: 38353630

Deep learning predicts prevalent and incident Parkinson’s disease from UK Biobank fundus imaging.

Tran C, Shen K, Liu K, Ashok A, Ramirez-Zamora A, Chen J, Li Y, Fang R.

Sci Rep. 2024 Feb 13;14(1):3637. doi: 10.1038/s41598-024-54251-1.

PMID: 38351326

A leaky gut dysregulates gene networks in the brain associated with immune activation, oxidative stress, and myelination in a mouse model of colitis.

Boles JS, Krueger ME, Jernigan JE, Cole CL, Neighbarger NK, Uriarte Huarte O, Tansey MG.

Brain Behav Immun. 2024 Feb 8;117:473-492. doi: 10.1016/j.bbi.2024.02.007. Online ahead of print.

PMID: 38341052

RNA therapeutics for neurological disease.

Nguyen L.

Prog Mol Biol Transl Sci. 2024;203:165-180. doi: 0.1016/bs.pmbts.2024.01.005. Epub 2024 Jan 24.

PMID: 38359997

Unfilled gaps by polβ lead to aberrant ligation by LIG1 at the downstream steps of base excision repair pathway.

Gulkis M, Martinez E, Almohdar D, Çağlayan M.

Nucleic Acids Res. 2024 Feb 16:gkae104. doi: 10.1093/nar/gkae104. Online ahead of print.

PMID: 38366780

scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data.

Zhao F, Ma X, Yao B, Chen L.

bioRxiv. 2024 Jan 24:2024.01.21.576570. doi: 10.1101/2024.01.21.576570. Preprint.

PMID: 38328112