UFGI Publication Round-up: Week of 12/20/21

Almazan EMP, Ryan JF, Rouhana L.

Front Cell Dev Biol. 2021 Nov 26;9:777951. doi: 10.3389/fcell.2021.777951. eCollection 2021.

PMID: 34901022

Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses.

Hernandez AM, Ryan JF.

Syst Biol. 2021 Oct 13;70(6):1200-1212. doi: 10.1093/sysbio/syab027.

PMID: 33837789

Substance Use Affects Type 1 Diabetes Pancreas Pathology: Implications for Future Studies.

Bruggeman BS, Campbell-Thompson M, Filipp SL, Gurka MJ, Atkinson MA, Schatz DA, Jacobsen LM.

Front Endocrinol (Lausanne). 2021 Nov 29;12:778912. doi: 10.3389/fendo.2021.778912. eCollection 2021.

PMID: 34912300

Stability of healthy subgingival microbiome across space and time.

Tamashiro R, Strange L, Schnackenberg K, Santos J, Gadalla H, Zhao L, Li EC, Hill E, Hill B, Sidhu G, Kirst M, Walker C, Wang GP.

Sci Rep. 2021 Dec 14;11(1):23987. doi: 10.1038/s41598-021-03479-2.

PMID: 34907334

NLR Diversity and Candidate Fusiform Rust Resistance Genes in Loblolly Pine.

Ence D, Smith KE, Fan S, Neves LG, Paul R, Wegrzyn J, Peter GF, Kirst M, Brawner J, Nelson CD, Davis JM.

G3 (Bethesda). 2021 Dec 13:jkab421. doi: 10.1093/g3journal/jkab421. Online ahead of print.

PMID: 34897455

Hypermodified DNA in Viruses of E. coli and Salmonella.

Hutinet G, Lee YJ, de Crécy-Lagard V, Weigele PR.

EcoSal Plus. 2021 Dec 15;9(2):eESP00282019. doi: 10.1128/ecosalplus.ESP-0028-2019. Epub 2021 Sep 28.

PMID: 34910575

Comparative effects of guided vs. potent P2Y12 inhibitor therapy in acute coronary syndrome: a network meta-analysis of 61 898 patients from 15 randomized trials.

Galli M, Benenati S, Franchi F, Rollini F, Capodanno D, Biondi-Zoccai G, Vescovo GM, Cavallari LH, Bikdeli B, Ten Berg J, Mehran R, Gibson CM, Crea F, Pereira NL, Sibbing D, Angiolillo DJ.

Eur Heart J. 2021 Dec 16:ehab836. doi: 10.1093/eurheartj/ehab836. Online ahead of print.

PMID: 34918066

Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a.

Fields CJ, Li L, Hiers NM, Li T, Sheng P, Huda T, Shan J, Gay L, Gu T, Bian J, Kilberg MS, Renne R, Xie M.

PLoS Genet. 2021 Dec 16;17(12):e1009934. doi: 10.1371/journal.pgen.1009934. eCollection 2021 Dec.

PMID: 34914716

Characterization of adductomic totality of NNK, (R)-NNAL, and (S)-NNAL in A/J mice, and their correlations with distinct lung carcinogenicity.

Hu Q, Upadhyaya P, Hecht SS, Aly FZ, Huo Z, Xing C.

Carcinogenesis. 2021 Dec 17:bgab113. doi: 10.1093/carcin/bgab113. Online ahead of print.

PMID: 34919675

Resting-state functional connectivity patterns are associated with worst pain duration in community-dwelling older adults.

Valdes-Hernandez PA, Montesino-Goicolea S, Hoyos L, Porges EC, Huo Z, Ebner NC, Woods AJ, Cohen R, Riley JL 3rd, Fillingim RB, Cruz-Almeida Y.

Pain Rep. 2021 Dec 8;6(4):e978. doi: 10.1097/PR9.0000000000000978. eCollection 2021 Nov-Dec.

PMID: 34901680

Psychological profiles in adults with knee OA-related pain: a replication study.

Johnson AJ, Laffitte Nodarse C, Peraza JA, Valdes-Hernandez PA, Montesino-Goicolea S, Huo Z, Fillingim RB, Cruz-Almeida Y.

Ther Adv Musculoskelet Dis. 2021 Dec 8;13:1759720X211059614. doi: 10.1177/1759720X211059614. eCollection 2021.

PMID: 34900003

Advanced therapeutic strategy for hereditary neuromuscular diseases.

Hwu WL, Muramatsu SI, Chien YH, Byrne BJ.

Mol Ther. 2021 Dec 11:S1525-0016(21)00640-7. doi: 10.1016/j.ymthe.2021.12.004. Online ahead of print.

PMID: 34895502

Slow conformational dynamics of the human A_2A adenosine receptor are temporally ordered.

Wei S, Thakur N, Ray AP, Jin B, Obeng S, McCurdy CR, McMahon LR, Gutiérrez-de-Terán H, Eddy MT, Lamichhane R.

Structure. 2021 Dec 6:S0969-2126(21)00417-2. doi: 10.1016/j.str.2021.11.005. Online ahead of print.

PMID: 34895472

Decabromodiphenyl Ethane Mainly Affected the Muscle Contraction and Reproductive Endocrine System in Female Adult Zebrafish.

Sun Y, Zhu B, Ling S, Yan B, Wang X, Jia S, Martyniuk CJ, Zhang W, Yang L, Zhou B.

Environ Sci Technol. 2021 Dec 17. doi: 10.1021/acs.est.1c06679. Online ahead of print.

PMID: 34919388

Influence of selenium on the mycelia of the shaggy bracket fungus, Inonotus hispidus.

Song F, Su D, Keyhani NO, Wang C, Shen L, Qiu J.

J Sci Food Agric. 2021 Dec 17. doi: 10.1002/jsfa.11724. Online ahead of print.

PMID: 34921405

A fungal sirtuin modulates development and virulence in the insect pathogen, Beauveria bassiana.

Cai Q, Tian L, Xie JT, Huang QY, Feng MG, Keyhani NO.

Environ Microbiol. 2021 Sep;23(9):5164-5183. doi: 10.1111/1462-2920.15497. Epub 2021 Aug 25.

PMID: 33817929

A structure-based nomenclature for Bacillus thuringiensis and other bacteria-derived pesticidal proteins.

Crickmore N, Berry C, Panneerselvam S, Mishra R, Connor TR, Bonning BC.

J Invertebr Pathol. 2021 Nov;186:107438. doi: 10.1016/j.jip.2020.107438. Epub 2020 Jul 9.

PMID: 32652083

Attack of the dark clones the genetics of reproductive and color traits of South African honey bees (Apis mellifera spp.).

Patterson Rosa L, Eimanifar A, Kimes AG, Brooks SA, Ellis JD.

PLoS One. 2021 Dec 14;16(12):e0260833. doi: 10.1371/journal.pone.0260833. eCollection 2021.

PMID: 34905583

Genomic Association of Chronic Idiopathic Anhidrosis to a Potassium Channel Subunit in a Large Animal Model.

Patterson Rosa L, Walker N, Mallicote M, MacKay RJ, Brooks SA.

J Invest Dermatol. 2021 Nov;141(11):2639-2645.e3. doi: 10.1016/j.jid.2021.05.014. Epub 2021 May 31.

PMID: 34081968

HLA Class-II‒Restricted CD8⁺ T Cells Contribute to the Promiscuous Immune Response in Dapsone-Hypersensitive Patients.

Zhao Q, Almutairi M, Tailor A, Lister A, Harper N, Line J, Meng X, Pratoomwun J, Jaruthamsophon K, Sukasem C, Sun Y, Sun L, Ogese MO, MacEwan DJ, Pirmohamed M, Liu J, Ostrov DA, Liu H, Zhang F, Naisbitt DJ.

J Invest Dermatol. 2021 Oct;141(10):2412-2425.e2. doi: 10.1016/j.jid.2021.03.014. Epub 2021 Mar 30.

PMID: 33798536

A long-amplicon viability-qPCR test for quantifying living pathogens that cause bacterial spot in tomato seed.

Wang H, Wagnon R, Negrete D, Timilsina S, Jones JB, Vallad GE, Turechek WW.

Plant Dis. 2021 Dec 12. doi: 10.1094/PDIS-11-21-2509-RE. Online ahead of print.

PMID: 34894749

Estimated versus measured energy expenditure in ventilated surgical-trauma critically Ill patients.

Kamel AY, Robayo L, Liang D, Rosenthal MD, Croft CA, Gabriela G, Babette B, Efron PA, Mohr A, Moore FA, Brakenridge SC.

JPEN J Parenter Enteral Nutr. 2021 Dec 18. doi: 10.1002/jpen.2314. Online ahead of print.

PMID: 34921708

Mutations in LRRK2 linked to Parkinson disease sequester Rab8a to damaged lysosomes and regulate transferrin-mediated iron uptake in microglia.

Mamais A, Kluss JH, Bonet-Ponce L, Landeck N, Langston RG, Smith N, Beilina A, Kaganovich A, Ghosh MC, Pellegrini L, Kumaran R, Papazoglou I, Heaton GR, Bandopadhyay R, Maio N, Kim C, LaVoie MJ, Gershlick DC, Cookson MR.

PLoS Biol. 2021 Dec 16;19(12):e3001480. doi: 10.1371/journal.pbio.3001480. eCollection 2021 Dec.

PMID: 34914695

Association of Cognitive Impairment With Free Water in the Nucleus Basalis of Meynert and Locus Coeruleus to Transentorhinal Cortex Tract.

Chu WT, Wang WE, Zaborszky L, Golde TE, DeKosky S, Duara R, Loewenstein DA, Adjouadi M, Coombes SA, Vaillancourt DE.

Neurology. 2021 Dec 14:10.1212/WNL.0000000000013206. doi: 10.1212/WNL.0000000000013206. Online ahead of print.

PMID: 34906980