UFGI Publication Round-up: Week of 11/29/21

UFGI Publication Round-up: Week of 11/29/21

Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements.

Chen D, Hosner PA, Dittmann DL, O’Neill JP, Birks SM, Braun EL, Kimball RT.

BMC Ecol Evol. 2021 Nov 22;21(1):209. doi: 10.1186/s12862-021-01935-1.

PMID: 34809586

Evaluating the Diagnostic Paradigm for Group A and Non-Group A Streptococcal Pharyngitis in the College Student Population.

Rich SN, Prosperi M, Klann EM, Codreanu PT, Cook RL, Turley MK.

Open Forum Infect Dis. 2021 Nov 16;8(11):ofab482. doi: 10.1093/ofid/ofab482. eCollection 2021 Nov.

PMID: 34805428

Chloranthus genome provides insights into the early diversification of angiosperms.

Guo X, Fang D, Sahu SK, Yang S, Guang X, Folk R, Smith SA, Chanderbali AS, Chen S, Liu M, Yang T, Zhang S, Liu X, Xu X, Soltis PS, Soltis DE, Liu H.

Nat Commun. 2021 Nov 26;12(1):6930. doi: 10.1038/s41467-021-26922-4.

PMID: 34836973

Power calculator for detecting allelic imbalance using hierarchical Bayesian model.

Sherbina K, León-Novelo LG, Nuzhdin SV, McIntyre LM, Marroni F.

BMC Res Notes. 2021 Nov 27;14(1):436. doi: 10.1186/s13104-021-05851-x.

PMID: 34838135


NF-κB modifies the mammalian circadian clock through interaction with the core clock protein BMAL1.

Shen Y, Endale M, Wang W, Morris AR, Francey LJ, Harold RL, Hammers DW, Huo Z, Partch CL, Hogenesch JB, Wu ZH, Liu AC.

PLoS Genet. 2021 Nov 22;17(11):e1009933. doi: 10.1371/journal.pgen.1009933. Online ahead of print.

PMID: 34807912

Nicotine Induces Maternal and Fetal Inflammatory Responses Which Predispose Intrauterine Infection Risk in a Rat Model.

von Chamier M, Reyes L, Hayward LF, Brown MB.

Nicotine Tob Res. 2021 Aug 29;23(10):1763-1770. doi: 10.1093/ntr/ntab080.

PMID: 33894055

Emerging mutation patterns in SARS-CoV-2 variants.

Ostrov DA, Knox GW.

Biochem Biophys Res Commun. 2021 Nov 22;586:87-92. doi: 10.1016/j.bbrc.2021.11.059. Online ahead of print.

PMID: 34837837

Highly Specific Sigma Receptor Ligands Exhibit Anti-Viral Properties in SARS-CoV-2 Infected Cells.

Ostrov DA, Bluhm AP, Li D, Khan JQ, Rohamare M, Rajamanickam K, K Bhanumathy K, Lew J, Falzarano D, Vizeacoumar FJ, Wilson JA, Mottinelli M, Kanumuri SRR, Sharma A, McCurdy CR, Norris MH.

Pathogens. 2021 Nov 20;10(11):1514. doi: 10.3390/pathogens10111514.

PMID: 34832669

Geographic Partitioning of Dengue Virus Transmission Risk in Florida.

Stephenson CJ, Coatsworth H, Waits CM, Nazario-Maldonado NM, Mathias DK, Dinglasan RR, Lednicky JA.

Viruses. 2021 Nov 5;13(11):2232. doi: 10.3390/v13112232.

PMID: 34835038

A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses.

Joshi J, Hasnain G, Logue T, Lynch M, Wu S, Guan JC, Alseekh S, Fernie AR, Hanson AD, McCarty DR.

Metabolites. 2021 Nov 22;11(11):797. doi: 10.3390/metabo11110797.

PMID: 34822455

The Spt10 GNAT Superfamily Protein Modulates Development, Cell Cycle Progression and Virulence in the Fungal Insect Pathogen, Beauveria bassiana.

Cai Q, Wang JJ, Xie JT, Jiang DH, Keyhani NO.

J Fungi (Basel). 2021 Oct 26;7(11):905. doi: 10.3390/jof7110905.

PMID: 34829192

Characterization of Bacterial and Fungal Communities Reveals Novel Consortia in Tropical Oligotrophic Peatlands.

Morrison ES, Thomas P, Ogram A, Kahveci T, Turner BL, Chanton JP.

Microb Ecol. 2021 Jul;82(1):188-201. doi: 10.1007/s00248-020-01483-z. Epub 2020 Jan 15.

PMID: 31942666

Transcriptome diversity and differential expression in supporting limb laminitis.

Holl HM, Armstrong C, Galantino-Homer H, Brooks SA.

Vet Immunol Immunopathol. 2021 Nov 9;243:110353. doi: 10.1016/j.vetimm.2021.110353. Online ahead of print.

PMID: 34839133

Widespread microRNA degradation elements in target mRNAs can assist the encoded proteins.

Li L, Sheng P, Li T, Fields CJ, Hiers NM, Wang Y, Li J, Guardia CM, Licht JD, Xie M.

Genes Dev. 2021 Nov 24. doi: 10.1101/gad.348874.121. Online ahead of print.

PMID: 34819352

Rapid phenotypic change in a polymorphic salamander over 43 years.

Hantak MM, Federico NA, Blackburn DC, Guralnick RP.

Sci Rep. 2021 Nov 22;11(1):22681. doi: 10.1038/s41598-021-02124-2.

PMID: 34811418

Assessing sub-lethal effects of the dinitroaniline herbicide pendimethalin in zebrafish embryos/larvae (Danio rerio).

Wang S, Lopez S, El Ahmadie N, Wengrovitz AS, Ganter J, Zhao YH, Souders CL 2nd, Martyniuk CJ.

Neurotoxicol Teratol. 2021 Nov 20;89:107051. doi: 10.1016/j.ntt.2021.107051. Online ahead of print.

PMID: 34813896

The use of hypercapnic conditions to assess opioid-induced respiratory depression in rats.

Crowley ML, Restrepo LF, Gamez-Jimenez LR, Patel A, Braun T, Pallares VLC, Ho NP, Reeves ME, McCurdy CR, McMahon LR, Hiranita T.

J Pharmacol Toxicol Methods. 2021 Sep-Oct;111:107101. doi: 10.1016/j.vascn.2021.107101. Epub 2021 Jul 7.

PMID: 34242797

Untapped endocannabinoid pharmacological targets: Pipe dream or pipeline?

Wilkerson JL, Bilbrey JA, Felix JS, Makriyannis A, McMahon LR.

Pharmacol Biochem Behav. 2021 Jul;206:173192. doi: 10.1016/j.pbb.2021.173192. Epub 2021 Apr 29.

PMID: 33932409

Utilizing a Human-Computer Interaction Approach to Evaluate the Design of Current Pharmacogenomics Clinical Decision Support.

Elchynski AL, Desai N, D’Silva D, Hall B, Marks Y, Wiisanen K, Cicali EJ, Cavallari LH, Nguyen KA.

J Pers Med. 2021 Nov 18;11(11):1227. doi: 10.3390/jpm11111227.

PMID: 34834578

Virus-derived sequences from the transcriptomes of two snail vectors of schistosomiasis, Biomphalaria pfeifferi and Bulinus globosus from Kenya.

Liu S, Zhang SM, Buddenborg SK, Loker ES, Bonning BC.

PeerJ. 2021 Nov 15;9:e12290. doi: 10.7717/peerj.12290. eCollection 2021.

PMID: 34820163

Efficient genome editing using endogenous U6 snRNA promoter-driven CRISPR/Cas9 sgRNA in Sclerotinia sclerotiorum.

Wang C, Rollins JA.

Fungal Genet Biol. 2021 Sep;154:103598. doi: 10.1016/j.fgb.2021.103598. Epub 2021 Jun 10.

PMID: 34119663


Trends in Use of Granulocyte Colony-Stimulating Factor Following Introduction of Biosimilars Among Adults With Cancer and Commercial or Medicare Insurance From 2014 to 2019.

Wang CY, Heldermon CD, Vouri SM, Park H, Wheeler SE, Ramnaraign BH, Dang NH, Brown JD.

JAMA Netw Open. 2021 Nov 1;4(11):e2133474. doi: 10.1001/jamanetworkopen.2021.33474.

PMID: 34812849

Diet composition of the African manatee: Spatial and temporal variation within the Sanaga River Watershed, Cameroon.

Takoukam Kamla A, Gomes DGE, Beck CA, Keith-Diagne LW, Hunter ME, Francis-Floyd R, Bonde RK.

Ecol Evol. 2021 Nov 2;11(22):15833-15845. doi: 10.1002/ece3.8254. eCollection 2021 Nov.

PMID: 34824793

Inflammation in Relation to Sarcopenia and Sarcopenic Obesity among Older Adults Living with Chronic Comorbidities: Results from the National Health and Nutrition Examination Survey 1999-2006.

Karanth SD, Washington C, Cheng TD, Zhou D, Leeuwenburgh C, Braithwaite D, Zhang D.

Nutrients. 2021 Nov 5;13(11):3957. doi: 10.3390/nu13113957.

PMID: 34836213

Development of a BCL-xL and BCL-2 dual degrader with improved anti-leukemic activity.

Lv D, Pal P, Liu X, Jia Y, Thummuri D, Zhang P, Hu W, Pei J, Zhang Q, Zhou S, Khan S, Zhang X, Hua N, Yang Q, Arango S, Zhang W, Nayak D, Olsen SK, Weintraub ST, Hromas R, Konopleva M, Yuan Y, Zheng G, Zhou D.

Nat Commun. 2021 Nov 25;12(1):6896. doi: 10.1038/s41467-021-27210-x.

PMID: 34824248