UFGI Publication Round-up: Week of 1/31/22

UFGI Publication Round-up: Week of 1/31/22

Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade.

Pereira WJ, Knaack S, Chakraborty S, Conde D, Folk RA, Triozzi PM, Balmant KM, Dervinis C, Schmidt HW, Ané JM, Roy S, Kirst M.

New Phytol. 2022 Jan 28. doi: 10.1111/nph.18006. Online ahead of print.

PMID: 35092309

Genome-scale CRISPR screens identify host factors that promote human coronavirus infection.

Grodzki M, Bluhm AP, Schaefer M, Tagmount A, Russo M, Sobh A, Rafiee R, Vulpe CD, Karst SM, Norris MH.

Genome Med. 2022 Jan 27;14(1):10. doi: 10.1186/s13073-022-01013-1.

PMID: 35086559

Transneuronal tracing to map connectivity in injured and transplanted spinal networks.

Fortino TA, Randelman ML, Hall AA, Singh J, Bloom DC, Engel E, Hoh DJ, Hou S, Zholudeva LV, Lane MA.

Exp Neurol. 2022 Jan 24:113990. doi: 10.1016/j.expneurol.2022.113990. Online ahead of print.

PMID: 35085573

Cost-effectiveness analysis of genotyping for HLA-B*15:02 in Indonesian patients with epilepsy using a generic model.

Yuliwulandari R, Shin JG, Kristin E, Suyatna FD, Prahasto ID, Prayuni K, Mahasirimongkol S, Cavallari LH, Mitropoulou C, Patrinos GP, Hao J, Williams MS, Snyder SR.

Pharmacogenomics J. 2021 Aug;21(4):476-483. doi: 10.1038/s41397-021-00225-9. Epub 2021 Apr 6.

PMID: 33824430

Depression phenotype identified by using single nucleotide exact amplicon sequence variants of the human gut microbiome.

Stevens BR, Roesch L, Thiago P, Russell JT, Pepine CJ, Holbert RC, Raizada MK, Triplett EW.

Mol Psychiatry. 2021 Aug;26(8):4277-4287. doi: 10.1038/s41380-020-0652-5. Epub 2020 Jan 27.

PMID: 31988436

Comparison of highly pure rAAV9 vector stocks produced in suspension by PEI transfection or HSV infection reveals striking quantitative and qualitative differences.

Trivedi PD, Yu C, Chaudhuri P, Johnson EJ, Caton T, Adamson L, Byrne BJ, Paulk NK, Clément N.

Mol Ther Methods Clin Dev. 2021 Dec 25;24:154-170. doi: 10.1016/j.omtm.2021.12.006. eCollection 2022 Mar 10.

PMID: 35071688

Valproate reverses mania-like behaviors in mice via preferential targeting of HDAC2.

Logan RW, Ozburn AR, Arey RN, Ketchesin KD, Winquist A, Crain A, Tobe BTD, Becker-Krail D, Jarpe MB, Xue X, Zong W, Huo Z, Parekh PK, Zhu X, Fitzgerald E, Zhang H, Oliver-Smith J, DePoy LM, Hildebrand MA, Snyder EY, Tseng GC, McClung CA.

Mol Psychiatry. 2021 Aug;26(8):4066-4084. doi: 10.1038/s41380-020-00958-2. Epub 2020 Nov 24.

PMID: 33235333

Knox homologs shoot meristemless (STM) and KNAT6 are epistatic to CLAVATA3 (CLV3) during shoot meristem development in Arabidopsis thaliana.

Nidhi S, Preciado J, Tie L.

Mol Biol Rep. 2021 Sep;48(9):6291-6302. doi: 10.1007/s11033-021-06622-4. Epub 2021 Aug 21.

PMID: 34417947

Endocrine disruption by azole fungicides in fish: A review of the evidence.

Huang T, Zhao Y, He J, Cheng H, Martyniuk CJ.

Sci Total Environ. 2022 Jan 25:153412. doi: 10.1016/j.scitotenv.2022.153412. Online ahead of print.

PMID: 35090921

Mitochondrial and transcriptome responses in rat dopaminergic neuronal cells following exposure to the insecticide fipronil.

Souders CL 2nd, Rushin A, Sanchez CL, Toth D, Adamovsky O, Martyniuk CJ.

Neurotoxicology. 2021 Jul;85:173-185. doi: 10.1016/j.neuro.2021.05.011. Epub 2021 May 25.

PMID: 34044035

Metabolic profiling in human SH-SY5Y neuronal cells exposed to perfluorooctanoic acid (PFOA).

Souders CL 2nd, Sanchez CL, Malphurs W, Aristizabal-Henao JJ, Bowden JA, Martyniuk CJ.

Neurotoxicology. 2021 Jul;85:160-172. doi: 10.1016/j.neuro.2021.05.009. Epub 2021 May 21.

PMID: 34029635

Characterization of a mouse neuropathic pain model caused by the highly active antiviral therapy (HAART) Stavudine.

Wilkerson JL, Felix JS, Bilbrey JA, McCurdy CR, McMahon LR.

Pharmacol Rep. 2021 Oct;73(5):1457-1464. doi: 10.1007/s43440-021-00262-y. Epub 2021 Apr 16.

PMID: 33860918

Towards an integrative understanding of cancer mechanobiology: calcium, YAP, and microRNA under biophysical forces.

Liang C, Huang M, Li T, Li L, Sussman H, Dai Y, Siemann DW, Xie M, Tang X.

Soft Matter. 2022 Jan 28. doi: 10.1039/d1sm01618k. Online ahead of print.

PMID: 35089300

Modular Synthetic Routes to Fluorine-Containing Halogenated Phenazine and Acridine Agents That Induce Rapid Iron Starvation in Methicillin-Resistant Staphylococcus aureus Biofilms.

Liu K, Brivio M, Xiao T, Norwood VM 4th, Kim YS, Jin S, Papagni A, Vaghi L, Huigens RW 3rd.

ACS Infect Dis. 2022 Jan 28. doi: 10.1021/acsinfecdis.1c00402. Online ahead of print.

PMID: 35089005

Future of biomedical, agricultural and biological systems research using domesticated animals.

Spencer TE, Wells KD, Lee K, Telugu BP, Hansen PJ, Bartol FF, Blomberg L, Schook LB, Dawson H, Lunney JK, Driver JP, Davis TA, Donovan SM, Dilger RN, Saif LJ, Moeser A, McGill JL, Smith G, Ireland JJ.

Biol Reprod. 2022 Jan 29:ioac019. doi: 10.1093/biolre/ioac019. Online ahead of print.

PMID: 35094055

AAV capsid design: A Goldilocks challenge.

Zolotukhin S, Vandenberghe LH.

Trends Mol Med. 2022 Jan 26:S1471-4914(22)00017-X. doi: 10.1016/j.molmed.2022.01.003. Online ahead of print.

PMID: 35093287

Clinical features, biochemistry, and HLA-DRB1 status in youth-onset type 1 diabetes in Sudan.

Ibrahim TAM, Govender D, Abdullah MA, Noble JA, Hussien MO, Lane JA, Mack SJ, Martin GGN, Atkinson MA, Wasserfall CH, Ogle GD.

Pediatr Diabetes. 2021 Aug;22(5):749-757. doi: 10.1111/pedi.13209. Epub 2021 Apr 20.

PMID: 33837995

The Gut-Brain Axis and Its Relation to Parkinson’s Disease: A Review.

Klann EM, Dissanayake U, Gurrala A, Farrer M, Shukla AW, Ramirez-Zamora A, Mai V, Vedam-Mai V.

Front Aging Neurosci. 2022 Jan 7;13:782082. doi: 10.3389/fnagi.2021.782082. eCollection 2021.

PMID: 35069178

Blood-based biomarkers of inflammation in amyotrophic lateral sclerosis.

Staats KA, Borchelt DR, Tansey MG, Wymer J.

Mol Neurodegener. 2022 Jan 24;17(1):11. doi: 10.1186/s13024-022-00515-1.

PMID: 35073950