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UFGI Publication round-up week 8/12

Blueberries as an additive to increase the survival of Lactobacillus johnsonii N6.2 to lyophilisation.

Cai D, Harrison NA, Kling DN, Gonzalez CF, Lorca GL.

Benef Microbes. 2019 Apr 19;10(4):473-482. doi: 10.3920/BM2018.0144. Epub 2019 Apr 1.

PMID: 30931589

Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli.

Pourciau C, Pannuri A, Potts A, Yakhnin H, Babitzke P, Romeo T.

MBio. 2019 Aug 6;10(4). pii: e01034-19. doi: 10.1128/mBio.01034-19.

PMID: 31387901

Fine-needle aspirate of a large mass in the ventral peritoneal space of a dog.

Conrado FO, Spoldi E, Kieran EA, Dark MJ, Leissinger MK.

Vet Clin Pathol. 2019 Jun;48(2):355-357. doi: 10.1111/vcp.12716. Epub 2019 Apr 2. No abstract available.

PMID: 30938837

The case for class II bacteriocins: a biophysical approach using “suicide probes” in receptor-free hosts to study their mechanism of action.

Ríos Colombo NS, Chalón MC, Dupuy FG, Gonzalez CF, Bellomio A.

Biochimie. 2019 Aug 2. pii: S0300-9084(19)30224-X. doi: 10.1016/j.biochi.2019.07.024.

PMID: 31381962

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation.

Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, Alvarez-Ponce D, Mitter N, Hayward A, Fletcher S, Rozas J, Sánchez Gracia A, Kuhn D, Barrientos-Priego AF, Salojärvi J, Librado P, Sankoff D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Proc Natl Acad Sci U S A. 2019 Aug 6. pii: 201822129. doi: 10.1073/pnas.1822129116.

PMID: 31387975

Identification of drug-specific public TCR driving severe cutaneous adverse reactions.

Pan RY, Chu MT, Wang CW, Lee YS, Lemonnier F, Michels AW, Schutte R, Ostrov DA, Chen CB, Phillips EJ, Mallal SA, Mockenhaupt M, Bellón T, Tassaneeyakul W, White KD, Roujeau JC, Chung WH, Hung SI.

Nat Commun. 2019 Aug 8;10(1):3569. doi: 10.1038/s41467-019-11396-2.

PMID: 31395875

A case for genotype-guided de-escalation of antiplatelet therapy after percutaneous coronary angioplasty.

Cavallari LH, Lee CR.

Future Cardiol. 2019 Aug 6. doi: 10.2217/fca-2019-0017. No abstract available.

PMID: 31385522

Disruption of an adenylate-forming reductase required for conidiation, increases virulence of the insect pathogenic fungus Metarhizium acridum by enhancing cuticle invasion.

Guo H, Wang H, Keyhani NO, Xia Y, Peng G.

Pest Manag Sci. 2019 Aug 8. doi: 10.1002/ps.5576.

PMID: 31392798

Efficacy of Glecaprevir and Pibrentasvir in Patients with Genotype 1 Hepatitis C Virus Infection with Treatment Failure after NS5A Inhibitor Plus Sofosbuvir Therapy.

Lok AS, Sulkowski MS, Kort JJ, Willner I, Reddy KR, Shiffman ML, Hassan MA, Pearlman BL, Hinestrosa F, Jacobson IM, Morelli G, Peter JA, Vainorius M, Michael LC, Fried MW, Wang GP, Lu W, Larsen L, Nelson DR.

Gastroenterology. 2019 Aug 8. pii: S0016-5085(19)41199-2. doi: 10.1053/j.gastro.2019.08.008.

PMID: 31401140

Mayaro as a Caribbean traveler: Evidence for multiple introductions and transmission of the virus into Haiti.

Blohm G, A Elbadry M, Mavian C, Stephenson C, Loeb J, White S, Telisma T, Chavannes S, De Rochar VMB, Salemi M, Lednicky JA, Glenn Morris J.

Int J Infect Dis. 2019 Aug 2. pii: S1201-9712(19)30317-0. doi: 10.1016/j.ijid.2019.07.031.

PMID: 31382049

MRI of Whole Rat Brain Perivascular Network Reveals Role for Ventricles in Brain Waste Clearance.

Magdoom KN, Brown A, Rey J, Mareci TH, King MA, Sarntinoranont M.

Sci Rep. 2019 Aug 7;9(1):11480. doi: 10.1038/s41598-019-44938-1.

PMID: 31391474

Old Mice Demonstrate Organ Dysfunction as well as Prolonged Inflammation, Immunosuppression, and Weight Loss in a Modified Surgical Sepsis Model.

Stortz JA, Hollen MK, Nacionales DC, Horiguchi H, Ungaro R, Dirain ML, Wang Z, Wu Q, Wu KK, Kumar A, Foster TC, Stewart BD, Ross JA, Segal M, Bihorac A, Brakenridge S, Moore FA, Wohlgemuth SE, Leeuwenburgh C, Mohr AM, Moldawer LL, Efron PA.

Crit Care Med. 2019 Aug 5. doi: 10.1097/CCM.0000000000003926. [Epub ahead of print]

PMID: 31389840

Chronic stress induces persistent low-grade inflammation.

Miller ES, Apple CG, Kannan KB, Funk ZM, Plazas JM, Efron PA, Mohr AM.

Am J Surg. 2019 Jul 30. pii: S0002-9610(19)30195-3. doi: 10.1016/j.amjsurg.2019.07.006.

PMID: 31378316

Proteomic characterization of MPK4 signaling network and putative substrates.

Zhang T, Chhajed S, Schneider JD, Feng G, Song WY, Chen S.

Plant Mol Biol. 2019 Aug 9. doi: 10.1007/s11103-019-00908-9. [Epub ahead of print]

PMID: 31399934

Heat-Responsive Proteomics of a Heat-Sensitive Spinach Variety.

Li S, Yu J, Li Y, Zhang H, Bao X, Bian J, Xu C, Wang X, Cai X, Wang Q, Wang P, Guo S, Miao Y, Chen S, Qin Z, Dai S.

Int J Mol Sci. 2019 Aug 8;20(16). pii: E3872. doi: 10.3390/ijms20163872.

PMID: 31398909

Genomic Prediction of Additive and Non-additive Effects Using Genetic Markers and Pedigrees.

de Almeida Filho JE, Guimarães JFR, Fonsceca E Silva F, Vilela de Resende MD, Muñoz P, Kirst M, de Resende Júnior MFR.

G3 (Bethesda). 2019 Aug 8;9(8):2739-2748. doi: 10.1534/g3.119.201004.

PMID: 31263059

Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome.

Russell JT, Roesch LFW, Ördberg M, Ilonen J, Atkinson MA, Schatz DA, Triplett EW, Ludvigsson J.

Nat Commun. 2019 Aug 9;10(1):3621. doi: 10.1038/s41467-019-11460-x.

PMID: 31399563

Designing Online and Mobile Diabetes Education for Fathers of Children With Type 1 Diabetes: Mixed Methods Study.

Albanese-O’Neill A, Schatz DA, Thomas N, Bernhardt JM, Cook CL, Haller MJ, Bernier AV, Silverstein JH, Westen SC, Elder JH.

JMIR Diabetes. 2019 Aug 6;4(3):e13724. doi: 10.2196/13724.

PMID: 31389338

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.

Lakin SM, Kuhnle A, Alipanahi B, Noyes NR, Dean C, Muggli M, Raymond R, Abdo Z, Prosperi M, Belk KE, Morley PS, Boucher C.

Commun Biol. 2019 Aug 6;2:294. doi: 10.1038/s42003-019-0545-9. eCollection 2019.

PMID: 31396574

ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.

He X, Zhang R, Rizvi R, Vasilakes J, Yang X, Guo Y, He Z, Prosperi M, Huo J, Alpert J, Bian J.

BMC Med Inform Decis Mak. 2019 Aug 8;19(Suppl 4):150. doi: 10.1186/s12911-019-0857-1.

PMID: 31391091

Identification of murine gammaherpesvirus 68 miRNA-mRNA hybrids reveals miRNA target conservation among gammaherpesviruses including host translation and protein modification machinery.

Bullard WL, Kara M, Gay LA, Sethuraman S, Wang Y, Nirmalan S, Esemenli A, Feswick A, Hoffman BA, Renne R, Tibbetts SA.

PLoS Pathog. 2019 Aug 8;15(8):e1007843. doi: 10.1371/journal.ppat.1007843. eCollection 2019 Aug.

PMID: 31393953

Histone deacetylase inhibitor targets CD123/CD47-positive cells and reverse chemoresistance phenotype in acute myeloid leukemia.

Yan B, Chen Q, Shimada K, Tang M, Li H, Gurumurthy A, Khoury JD, Xu B, Huang S, Qiu Y.

Leukemia. 2019 Apr;33(4):931-944. doi: 10.1038/s41375-018-0279-6. Epub 2018 Oct 5.

PMID: 30291336

Senescent Neurophysiology: Ca2+ Signaling from the Membrane to the Nucleus.

Foster TC.

Neurobiol Learn Mem. 2019 Aug 5:107064. doi: 10.1016/j.nlm.2019.107064. [Epub ahead of print] Review.

PMID: 31394200

Polyploidy as a mechanism for surviving global change.

Sessa EB.

New Phytol. 2019 Jan;221(1):5-6. doi: 10.1111/nph.15513. No abstract available.

PMID: 30488604

Knockout of Babesia bovis rad51 ortholog and its complementation by expression from the BbACc3 artificial chromosome platform.

Mack EA, Xiao YP, Allred DR.

PLoS One. 2019 Aug 6;14(8):e0215882. doi: 10.1371/journal.pone.0215882. eCollection 2019.

PMID: 31386669

Characterization of de novo lytic infection of dermal lymphatic microvascular endothelial cells by Kaposi’s sarcoma-associated herpesvirus.

Golas G, Alonso JD, Toth Z.

Virology. 2019 Jul 31;536:27-31. doi: 10.1016/j.virol.2019.07.028.

PMID: 31394409

Effect of plasma MicroRNA on antihypertensive response to beta blockers in the Pharmacogenomic Evaluation of Antihypertensive Responses (PEAR) studies.

Solayman MH, Langaee TY, Gong Y, Shahin MH, Turner ST, Chapman AB, Gums JG, Boerwinkle E, Beitelshees AL, El-Hamamsy M, El-Wakeel L, Cooper-DeHoff RM, Badary OA, Johnson JA.

Eur J Pharm Sci. 2019 Apr 1;131:93-98. doi: 10.1016/j.ejps.2019.02.013. Epub 2019 Feb 10.

PMID: 30753892

Characterizing building blocks of resource constrained biological networks.

Ren Y, Ay A, Dobra A, Kahveci T.

BMC Bioinformatics. 2019 Jun 20;20(Suppl 12):318. doi: 10.1186/s12859-019-2838-x.

PMID: 31216986

Pompe disease gene therapy: neural manifestations require consideration of CNS directed therapy.

Byrne BJ, Fuller DD, Smith BK, Clement N, Coleman K, Cleaver B, Vaught L, Falk DJ, McCall A, Corti M.

Ann Transl Med. 2019 Jul;7(13):290. doi: 10.21037/atm.2019.05.56. Review.

PMID: 31392202

A neutral lipid-enriched diet improves myelination and alleviates peripheral nerve pathology in neuropathic mice.

Zhou Y, Bazick H, Miles JR, Fethiere A, Salihi MAI, Fazio S, Tavori H, Notterpek L.

Exp Neurol. 2019 Aug 3:113031. doi: 10.1016/j.expneurol.2019.113031.

PMID: 31386828

Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition.

Thingholm LB, Rühlemann MC, Koch M, Fuqua B, Laucke G, Boehm R, Bang C, Franzosa EA, Hübenthal M, Rahnavard A, Frost F, Lloyd-Price J, Schirmer M, Lusis AJ, Vulpe CD, Lerch MM, Homuth G, Kacprowski T, Schmidt CO, Nöthlings U, Karlsen TH, Lieb W, Laudes M, Franke A, Huttenhower C.

Cell Host Microbe. 2019 Aug 1. pii: S1931-3128(19)30348-8. doi: 10.1016/j.chom.2019.07.004.

PMID: 31399369