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UFGI Publication round-up week 4/9

Predicting male fertility in dairy cattle using markers with large effect and functional annotation data.

Nani JP, Rezende FM, Peñagaricano F.

BMC Genomics. 2019 Apr 2;20(1):258. doi: 10.1186/s12864-019-5644-y.

PMID: 30940077

Blueberries as an additive to increase the survival of Lactobacillus johnsonii N6.2 to lyophilisation.

Cai D, Harrison NA, Kling DN, Gonzalez CF, Lorca GL.

Benef Microbes. 2019 Apr 1:1-10. doi: 10.3920/BM2018.0144. [Epub ahead of print]

PMID: 30931589

A Cut/cohesin axis alters the chromatin landscape to facilitate neuroblast death.

Arya R, Gyonjyan S, Harding K, Sarkissian T, Li Y, Zhou L, White K.

Development. 2019 Apr 5. pii: dev.166603. doi: 10.1242/dev.166603. [Epub ahead of print]

PMID: 30952666

Genome-wide association study of susceptibility loci for T-cell acute lymphoblastic leukemia in children.

Qian M, Zhao X, Devidas M, Yang W, Gocho Y, Smith C, Gastier-Foster JM, Li Y, Xu H, Zhang S, Jeha S, Zhai X, Sanda T, Winter SS, Dunsmore KP, Raetz EA, Carroll WL, Winick NJ, Rabin KR, Zweidler-Mckay PA, Wood B, Pui CH, Evans WE, Hunger SP, Mullighan CG, Relling MV, Loh ML, Yang JJ.

J Natl Cancer Inst. 2019 Apr 2. pii: djz043. doi: 10.1093/jnci/djz043. [Epub ahead of print]

PMID: 30938820

First Measurements of Absolute Branching Fractions of the Ξ_{c}^{0} Baryon at Belle.

Li YB, Shen CP, Yuan CZ, Adachi I, Aihara H, Al Said S, Asner DM, Aushev T, Ayad R, Badhrees I, Ban Y, Bansal V, Beleño C, Berger M, Bhardwaj V, Bhuyan B, Bilka T, Biswal J, Bondar A, Bozek A, Bračko M, Cao L, Červenkov D, Chen A, Cheon BG, Chilikin K, Cho K, Choi SK, Choi Y, Cinabro D, Cunliffe S, Di Carlo S, Doležal Z, Dong TV, Drásal Z, Eidelman S, Fast JE, Fulsom BG, Garg R, Gaur V, Gabyshev N, Garmash A, Giri A, Goldenzweig P, Greenwald D, Grube B, Hayasaka K, Hayashii H, Hsu CL, Iijima T, Inami K, Inguglia G, Ishikawa A, Itoh R, Iwasaki M, Iwasaki Y, Jacobs WW, Jia S, Jin Y, Joffe D, Joo KK, Karyan G, Kawasaki T, Kichimi H, Kim DY, Kim HJ, Kim JB, Kim KT, Kim SH, Kinoshita K, Kodyš P, Korpar S, Kotchetkov D, Križan P, Kroeger R, Krokovny P, Kumita T, Kuzmin A, Kwon YJ, Lee JY, Lee SC, Li LK, Li Gioi L, Libby J, Liventsev D, Lubej M, MacNaughton J, Masuda M, Matsuda T, Merola M, Miyabayashi K, Miyata H, Mizuk R, Mohanty GB, Mussa R, Nakano E, Nakao M, Nath KJ, Nayak M, Niiyama M, Nishida S, Ono H, Onuki Y, Pakhlov P, Pakhlova G, Pal B, Pardi S, Park SH, Paul S, Pedlar TK, Pestotnik R, Piilonen LE, Popov V, Prencipe E, Russo G, Sakai Y, Salehi M, Sandilya S, Santelj L, Sanuki T, Savinov V, Schneider O, Schnell G, Schueler J, Schwanda C, Schwartz AJ, Seino Y, Senyo K, Sevior ME, Shibata TA, Shiu JG, Shwartz B, Solovieva E, Starič M, Sumihama M, Sumiyoshi T, Sutcliffe W, Takizawa M, Tanida K, Tao Y, Tenchini F, Trabelsi K, Uchida M, Uglov T, Unno Y, Uno S, Urquijo P, Van Tonder R, Varner G, Wang B, Wang CH, Wang MZ, Wang P, Wang XL, Won E, Yang SB, Ye H, Yelton J, Yin JH, Yusa Y, Zhang ZP, Zhilich V, Zhukova V; Belle Collaboration.

Phys Rev Lett. 2019 Mar 1;122(8):082001. doi: 10.1103/PhysRevLett.122.082001.

PMID: 30932568

Multiple Recombination Events Drive the Current Genetic Structure of Xanthomonas perforans in Florida.

Timilsina S, Pereira-Martin JA, Minsavage GV, Iruegas-Bocardo F, Abrahamian P, Potnis N, Kolaczkowski B, Vallad GE, Goss EM, Jones JB.

Front Microbiol. 2019 Mar 13;10:448. doi: 10.3389/fmicb.2019.00448. eCollection 2019.

PMID: 30930868


Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor.

Zhao J, Sauvage C, Zhao J, Bitton F, Bauchet G, Liu D, Huang S, Tieman DM, Klee HJ, Causse M.

Nat Commun. 2019 Apr 4;10(1):1534. doi: 10.1038/s41467-019-09462-w.

PMID: 30948717

Applications of Unmanned Aerial Vehicle Based Imagery in Turfgrass Field Trials.

Zhang J, Virk S, Porter W, Kenworthy K, Sullivan D, Schwartz B.

Front Plant Sci. 2019 Mar 15;10:279. doi: 10.3389/fpls.2019.00279. eCollection 2019.

PMID: 30930917

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 1. pii: 201813206. doi: 10.1073/pnas.1813206116.

PMID: 30936315


Identification of Long Noncoding RNAs in the Developing Endosperm of Maize.

Kim E, Xiong Y, Kang BH, Sung S.

Methods Mol Biol. 2019;1933:49-65. doi: 10.1007/978-1-4939-9045-0_3.

PMID: 30945178

Oligoribonuclease Contributes to Tolerance to Aminoglycoside and β-lactam Antibiotics by Regulating KatA in Pseudomonas aeruginosa.

Xia B, Li M, Tian Z, Chen G, Liu C, Xia Y, Jin Y, Bai F, Cheng Z, Jin S, Wu W.

Antimicrob Agents Chemother. 2019 Apr 1. pii: AAC.00212-19. doi: 10.1128/AAC.00212-19.

PMID: 30936107

Physiological profile of undifferentiated bovine blastocyst-derived trophoblasts.

Pillai VV, Siqueira LG, Das M, Kei TG, Tu LN, Herren AW, Phinney BS, Cheong SH, Hansen PJ, Selvaraj V.

Biol Open. 2019 Apr 5. pii: bio.037937. doi: 10.1242/bio.037937. [Epub ahead of print]

PMID: 30952696

Complete Urogenital and Anorectal Duplication in a Dog.

Coffman JM, McConkey M, Ellison G, Huynh E, Dark MJ.

Case Rep Vet Med. 2019 Mar 3;2019:3696978. doi: 10.1155/2019/3696978. eCollection 2019.

PMID: 30941228

Fine-needle aspirate of a large mass in the ventral peritoneal space in a dog.

Conrado FO, Spoldi E, Kieran EA, Dark MJ, Leissinger MK.

Vet Clin Pathol. 2019 Apr 2. doi: 10.1111/vcp.12716. [Epub ahead of print] No abstract available.

PMID: 30938837


Low-cost thermophoretic profiling of extracellular-vesicle surface proteins for the early detection and classification of cancers.

Liu C, Zhao J, Tian F, Cai L, Zhang W, Feng Q, Chang J, Wan F, Yang Y, Dai B, Cong Y, Ding B, Sun J, Tan W.

Nat Biomed Eng. 2019 Mar;3(3):183-193. doi: 10.1038/s41551-018-0343-6. Epub 2019 Jan 21. PMID: 30948809


Identifying Rare Variant Associations in Admixed Populations.

Qin H, Zhao J, Zhu X.

Sci Rep. 2019 Apr 1;9(1):5458. doi: 10.1038/s41598-019-41845-3.

PMID: 30931973

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 1. pii: 201813206. doi: 10.1073/pnas.1813206116.

PMID: 30936315

Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils.

Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, Tiedje JM, Yang Y, Zhou J.

MBio. 2019 Feb 26;10(1). pii: e02521-18. doi: 10.1128/mBio.02521-18.

PMID: 30808694

Gammaherpesvirus RNAs Come Full Circle.

Ungerleider NA, Tibbetts SA, Renne R, Flemington EK.

MBio. 2019 Apr 2;10(2). pii: e00071-19. doi: 10.1128/mBio.00071-19. Review.

PMID: 30940699

Hepatic glycogen storage diseases are associated to microbial dysbiosis.

Colonetti K, Bento Dos Santos B, Nalin T, Moura de Souza CF, Triplett EW, Dobbler PT, Schwartz IVD, Roesch LFW.

PLoS One. 2019 Apr 2;14(4):e0214582. doi: 10.1371/journal.pone.0214582. eCollection 2019.

PMID: 30939160

Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras.

Lorieul T, Pearson KD, Ellwood ER, Goëau H, Molino JF, Sweeney PW, Yost JM, Sachs J, Mata-Montero E, Nelson G, Soltis PS, Bonnet P, Joly A.

Appl Plant Sci. 2019 Mar 20;7(3):e01233. doi: 10.1002/aps3.1233. eCollection 2019 Mar.

PMID: 30937225

Persistent effects on bovine granulosa cell transcriptome after resolution of uterine disease.

Piersanti RL, Horlock AD, Block J, Santos JEP, Sheldon IM, Bromfield JJ.

Reproduction. 2019 Apr 1. pii: REP-19-0037.R1. doi: 10.1530/REP-19-0037.

PMID: 30933928

Gammaherpesvirus RNAs Come Full Circle.

Ungerleider NA, Tibbetts SA, Renne R, Flemington EK.

MBio. 2019 Apr 2;10(2). pii: e00071-19. doi: 10.1128/mBio.00071-19. Review.

PMID: 3094069

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