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UFGI Publication round-up week 12/4

Quantitative determination of armodafinil in human plasma by liquid chromatography-electrospray mass spectrometry: Application to a clinical study.

Chandasana H, Kast J, Bittman JA, Derendorf H.

Biomed Chromatogr. 2018 Nov;32(11):e4342. doi: 10.1002/bmc.4342. Epub 2018 Aug 7.

PMID: 30003558

Experimental design and modelling approach to evaluate efficacy of β-lactam/β-lactamase inhibitor combinations.

Sy SKB, Derendorf H.

Clin Microbiol Infect. 2018 Jul;24(7):707-715. doi: 10.1016/j.cmi.2017.07.020. Epub 2017 Jul 29.

PMID: 28760708

Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Gurumurthy A, Shen Y, Gunn EM, Bungert J.

Bioessays. 2018 Nov 30:e1800164. doi: 10.1002/bies.201800164. [Epub ahead of print] Review.

PMID: 30500078

Study Design and Rationale for the Mood and Methylation Study: A Platform for Multi-Omics Investigation of Depression in Twins.

Strachan E, Zhao J, Roy-Byrne PP, Fowler E, Bacus T.

Twin Res Hum Genet. 2018 Nov 28:1-7. doi: 10.1017/thg.2018.64. [Epub ahead of print]

PMID: 30484417

Optimizing the Targeting of Mouse Parvovirus 1 to Murine Melanoma Selects for Recombinant Genomes and Novel Mutations in the Viral Capsid Gene.

Marr M, D’Abramo A, Pittman N, Agbandje-McKenna M, Cotmore SF, Tattersall P.

Viruses. 2018 Jan 30;10(2). pii: E54. doi: 10.3390/v10020054.

PMID: 29385689


Eliminating perinatal HIV in the United States: mission possible?

Gnanashanmugam D, Rakhmanina N, Crawford K, Nesheim S, Ruel T, Birkhead GS, Chakraborty R, Lawrence R, Jean-Philippe P, Jayashankar L, Hoover A, Statton A, DʼSouza P, Fitzgibbon J, Hazra R, Warren B, Smith S, Abrams EJ.

AIDS. 2018 Nov 19. doi: 10.1097/QAD.0000000000002080. [Epub ahead of print]

PMID: 30475262


Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight.

Krishnamurthy A, Ferl RJ, Paul AL.

Appl Plant Sci. 2018 Nov 14;6(11):e01197. doi: 10.1002/aps3.1197. eCollection 2018 Nov.

PMID: 30473943

A UDP-glucosyltransferase PpUGT85A2 responsible for peach volatile glycosylation.

Wu B, Cao X, Liu H, Zhu C, Klee H, Zhang B, Chen K.

J Exp Bot. 2018 Nov 27. doi: 10.1093/jxb/ery419. [Epub ahead of print]

PMID: 30481327

Mapping the epidemic changes and risks of hemorrhagic fever with renal syndrome in Shaanxi Province, China, 2005-2016.

Liang W, Gu X, Li X, Zhang K, Wu K, Pang M, Dong J, Merrill HR, Hu T, Liu K, Shao Z, Yan H.

Sci Rep. 2018 Jan 15;8(1):749. doi: 10.1038/s41598-017-18819-4. Erratum in: Sci Rep. 2018 Apr 13;8(1):6234.

PMID: 29335595


Purification and partial characterization of LdtP, a cell envelope modifying enzyme in Liberibacter asiaticus.

Coyle JF, Pagliai FA, Zhang D, Lorca GL, Gonzalez CF.

BMC Microbiol. 2018 Nov 29;18(1):201. doi: 10.1186/s12866-018-1348-8.

PMID: 30497377


Bioinformatics core competencies for undergraduate life sciences education.

Wilson Sayres MA, Hauser C, Sierk M, Robic S, Rosenwald AG, Smith TM, Triplett EW, Williams JJ, Dinsdale E, Morgan WR, Burnette JM 3rd, Donovan SS, Drew JC, Elgin SCR, Fowlks ER, Galindo-Gonzalez S, Goodman AL, Grandgenett NF, Goller CC, Jungck JR, Newman JD, Pearson W, Ryder EF, Tosado-Acevedo R, Tapprich W, Tobin TC, Toro-Martínez A, Welch LR, Wright R, Barone L, Ebenbach D, McWilliams M, Olney KC, Pauley MA.

PLoS One. 2018 Jun 5;13(6):e0196878. doi: 10.1371/journal.pone.0196878. eCollection 2018.

PMID: 29870542


Self-Assembled Aptamer-Grafted Hyperbranched Polymer Nanocarrier for Targeted and Photoresponsive Drug Delivery.

Yang L, Sun H, Liu Y, Hou W, Yang Y, Cai R, Cui C, Zhang P, Pan X, Li X, Li L, Sumerlin BS, Tan W.

Angew Chem Int Ed Engl. 2018 Nov 2. doi: 10.1002/anie.201809753. [Epub ahead of print]

PMID: 30387923


Molecular Elucidation of Disease Biomarkers at the Interface of Chemistry and Biology.

Zhang L, Wan S, Jiang Y, Wang Y, Fu T, Liu Q, Cao Z, Qiu L, Tan W.

J Am Chem Soc. 2017 Feb 22;139(7):2532-2540. doi: 10.1021/jacs.6b10646. Epub 2017 Feb 7.

PMID: 28121431


10KP: A phylodiverse genome sequencing plan.

Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, Liu X, Xu X, Wong GK.

Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/giy013.

PMID: 29618049


Polyploidy as a mechanism for surviving global change.

Sessa EB.

New Phytol. 2019 Jan;221(1):5-6. doi: 10.1111/nph.15513. No abstract available.

PMID: 30488604


Principles of Wound Healing.

Schultz GS, Chin GA, Moldawer L, Diegelmann RF.

In: Fitridge R, Thompson M, editors.

Mechanisms of Vascular Disease: A Reference Book for Vascular Specialists [Internet]. Adelaide (AU): University of Adelaide Press; 2011. No abstract available.

PMID: 30485016


Contributions of self-criticism and shame to hoarding.

Chou CY, Tsoh J, Vigil O, Bain D, Uhm SY, Howell G, Chan J, Eckfield M, Plumadore J, Chan E, Komaiko K, Smith L, Franklin J, Vega E, Delucchi K, Mathews CA.

Psychiatry Res. 2018 Apr;262:488-493. doi: 10.1016/j.psychres.2017.09.030. Epub 2017 Sep 13.

PMID: 28939393


The new Chikungunya virus outbreak in Italy possibly originated from a single introduction from Asia.

Cella E, Riva E, Salemi M, Spoto S, Vita S, Fogolari M, Angeletti S, Ciccozzi M.

Pathog Glob Health. 2018 Mar;112(2):93-95. doi: 10.1080/20477724.2017.1406565. Epub 2017 Nov 28. No abstract available.

PMID: 29182057

Bcl11b is essential for licensing Th2 differentiation during helminth infection and allergic asthma.

Lorentsen KJ, Cho JJ, Luo X, Zuniga AN, Urban JF Jr, Zhou L, Gharaibeh R, Jobin C, Kladde MP, Avram D.

Nat Commun. 2018 Apr 26;9(1):1679. doi: 10.1038/s41467-018-04111-0. Erratum in: Nat Commun. 2018 Jul 19;9(1):2901.

PMID: 29700302


Peak oxygen uptake (VO2peak) across childhood, adolescence and young adulthood in Barth syndrome: Data from cross-sectional and longitudinal studies.

Cade WT, Bohnert KL, Reeds DN, Peterson LR, Bittel AJ, Bashir A, Byrne BJ, Taylor CL.

PLoS One. 2018 May 24;13(5):e0197776. doi: 10.1371/journal.pone.0197776. eCollection 2018.

PMID: 29795646


Tebuconazole reduces basal oxidative respiration and promotes anxiolytic responses and hypoactivity in early-staged zebrafish (Danio rerio).

Rodriguez VP, Souders CL 2nd, Tischuk C, Martyniuk CJ.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Nov 27. pii: S1532-0456(18)30267-9. doi: 10.1016/j.cbpc.2018.11.017. [Epub ahead of print]

PMID: 30500453


Persistent Inflammation and Anemia among Critically Ill Septic Patients.

Loftus TJ, Mira JC, Stortz JA, Ozrazgat-Baslanti T, Ghita GL, Wang Z, Brumback BA, Ungaro RF, Bihorac A, Leeuwenburgh C, Moore FA, Moldawer LL, Brakenridge SC, Efron PA, Mohr AM.

J Trauma Acute Care Surg. 2018 Nov 27. doi: 10.1097/TA.0000000000002147. [Epub ahead of print]

PMID: 30489504


Microbial recognition and danger signals in sepsis and trauma.

Raymond SL, Holden DC, Mira JC, Stortz JA, Loftus TJ, Mohr AM, Moldawer LL, Moore FA, Larson SD, Efron PA.

Biochim Biophys Acta Mol Basis Dis. 2017 Oct;1863(10 Pt B):2564-2573. doi: 10.1016/j.bbadis.2017.01.013. Epub 2017 Jan 20. Review.

PMID: 28115287