Visit the Genetics & Genomics Graduate Program Homepage
Comments are off

UFGI Publication round-up week 11/26

Low Frequency of Lymph Node Metastases in Patients in the United States With Early-stage Gastric Cancers That Fulfill Japanese Endoscopic Resection Criteria.

Hanada Y, Choi AY, Hwang JH, Draganov PV, Khanna L, Sethi A, Bartel MJ, Goel N, Abe S, De Latour RA, Park K, Melis M, Newman E, Hatzaras I, Reddy SS, Farma JM, Liu X, Schlachterman A, Kresak J, Trapp G, Ansari N, Schrope B, Lee JY, Dhall D, Lo S, Jamil LH, Burch M, Gaddam S, Gong Y, Del Portillo A, Tomizawa Y, Truong CD, Brewer Gutierrez OI, Montgomery E, Johnston FM, Duncan M, Canto M, Ahuja N, Lennon AM, Ngamruengphong S.

Clin Gastroenterol Hepatol. 2018 Nov 21. pii: S1542-3565(18)31274-6. doi: 10.1016/j.cgh.2018.11.031. [Epub ahead of print]

PMID: 30471457

 

Tet2 loss leads to hypermutagenicity in haematopoietic stem/progenitor cells.

Pan F, Wingo TS, Zhao Z, Gao R, Makishima H, Qu G, Lin L, Yu M, Ortega JR, Wang J, Nazha A, Chen L, Yao B, Liu C, Chen S, Weeks O, Ni H, Phillips BL, Huang S, Wang J, He C, Li GM, Radivoyevitch T, Aifantis I, Maciejewski JP, Yang FC, Jin P, Xu M.

Nat Commun. 2017 Apr 25;8:15102. doi: 10.1038/ncomms15102.

PMID: 28440315

 

Tissue-Based Mapping of the Fathead Minnow (<i>Pimephales promelas</i>) Transcriptome and Proteome.

Lavelle C, Smith LC, Bisesi JH Jr, Yu F, Silva-Sanchez C, Moraga-Amador D, Buerger AN, Garcia-Reyero N, Sabo-Attwood T, Denslow ND.

Front Endocrinol (Lausanne). 2018 Nov 6;9:611. doi: 10.3389/fendo.2018.00611. eCollection 2018.

PMID: 30459712

 

Molecular Factors of Hypochlorite Tolerance in the Hypersaline Archaeon Haloferax volcanii.

Gomez M, Leung W, Dantuluri S, Pillai A, Gani Z, Hwang S, McMillan LJ, Kiljunen S, Savilahti H, Maupin-Furlow JA.

Genes (Basel). 2018 Nov 20;9(11). pii: E562. doi: 10.3390/genes9110562.

PMID: 30463375

 

Sex Modulates Lactobacillus johnsonii N6.2 and Phytophenol Effectiveness in Reducing High Fat Diet Induced mTOR Activation in Sprague-Dawley Rats.

Kling DN, DeBose-Scarlett EM, Teixeira LD, Gezan SA, Lorca GL, Gonzalez CF.

Front Microbiol. 2018 Nov 6;9:2649. doi: 10.3389/fmicb.2018.02649. eCollection 2018.

PMID: 30459740

 


Shift of uterine microbiota associated with antibiotic treatment and cure of metritis in dairy cows.

Jeon SJ, Lima FS, Vieira-Neto A, Machado VS, Lima SF, Bicalho RC, Santos JEP, Galvão KN.

Vet Microbiol. 2018 Feb;214:132-139. doi: 10.1016/j.vetmic.2017.12.022. Epub 2017 Dec 28.

PMID: 29408025

 

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN.

Commun Biol. 2018 Nov 16;1:197. doi: 10.1038/s42003-018-0199-z. eCollection 2018.

PMID: 30456315

 

Insights into the regeneration of skin from Acomys, the spiny mouse.

Maden M, Brant JO.

Exp Dermatol. 2018 Nov 20. doi: 10.1111/exd.13847. [Epub ahead of print] Review.

PMID: 30457673

 

Bioavailability of biosolids-borne ciprofloxacin and azithromycin to terrestrial organisms: Microbial toxicity and earthworm responses.

Sidhu H, O’Connor G, Ogram A, Kumar K.

Sci Total Environ. 2019 Feb 10;650(Pt 1):18-26. doi: 10.1016/j.scitotenv.2018.09.004. Epub 2018 Sep 3.

PMID: 30195128

 

A note on compatibility for inference with missing data in the presence of auxiliary covariates.

Daniels MJ, Luo X.

Stat Med. 2018 Nov 18. doi: 10.1002/sim.8025. [Epub ahead of print]

PMID: 30450746

 

Secretory granule protein chromogranin B (CHGB) forms an anion channel in membranes.

Yadav GP, Zheng H, Yang Q, Douma LG, Bloom LB, Jiang QX.

Life Sci Alliance. 2018 Sep 24;1(5):e201800139. doi: 10.26508/lsa.201800139. eCollection 2018 Oct.

PMID: 30456382


Bringing Light to Transcription: The Optogenetics Repertoire.

de Mena L, Rizk P, Rincon-Limas DE.

Front Genet. 2018 Nov 2;9:518. doi: 10.3389/fgene.2018.00518. eCollection 2018. Review.

PMID: 30450113

 

Multiple sclerosis patients who are stable on interferon therapy show better outcomes when staying on same therapy than patients who switch to another interferon.

Chen C, Wu N, Watson C.

Clinicoecon Outcomes Res. 2018 Nov 2;10:723-730. doi: 10.2147/CEOR.S163907. eCollection 2018.

PMID: 30464565

 

Selective inhibition of carbonic anhydrase IX over carbonic anhydrase XII in breast cancer cells using benzene sulfonamides: Disconnect between activity and growth inhibition.

Mboge MY, Chen Z, Wolff A, Mathias JV, Tu C, Brown KD, Bozdag M, Carta F, Supuran CT, McKenna R, Frost SC.

PLoS One. 2018 Nov 19;13(11):e0207417. doi: 10.1371/journal.pone.0207417. eCollection 2018.

PMID: 30452451

 

Using insect natural history collections to study global change impacts: challenges and opportunities.

Kharouba HM, Lewthwaite JMM, Guralnick R, Kerr JT, Vellend M.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170405. doi: 10.1098/rstb.2017.0405. Review.

PMID: 30455219

 


The guard cell ionome: Understanding the role of ions in guard cell functions.

Misra BB, Reichman SM, Chen S.

Prog Biophys Mol Biol. 2018 Nov 17. pii: S0079-6107(18)30173-1. doi: 10.1016/j.pbiomolbio.2018.11.007. [Epub ahead of print] Review.

PMID: 30458181

 


Tet2 loss leads to hypermutagenicity in haematopoietic stem/progenitor cells.

Pan F, Wingo TS, Zhao Z, Gao R, Makishima H, Qu G, Lin L, Yu M, Ortega JR, Wang J, Nazha A, Chen L, Yao B, Liu C, Chen S, Weeks O, Ni H, Phillips BL, Huang S, Wang J, He C, Li GM, Radivoyevitch T, Aifantis I, Maciejewski JP, Yang FC, Jin P, Xu M.

Nat Commun. 2017 Apr 25;8:15102. doi: 10.1038/ncomms15102.

PMID: 28440315

 

The Elongator complex-associated protein DRL1 plays a positive role in immune responses against necrotrophic fungal pathogens in Arabidopsis.

Wang C, Zhang X, Li JL, Zhang Y, Mou Z.

Mol Plant Pathol. 2018 Feb;19(2):286-299. doi: 10.1111/mpp.12516. Epub 2017 Jan 22.

PMID: 27868335

 

Comprehensively Characterizing the Cytological Features of Saccharum spontaneum by the Development of a Complete Set of Chromosome-Specific Oligo Probes.

Meng Z, Zhang Z, Yan T, Lin Q, Wang Y, Huang W, Huang Y, Li Z, Yu Q, Wang J, Wang K.

Front Plant Sci. 2018 Nov 6;9:1624. doi: 10.3389/fpls.2018.01624. eCollection 2018.

PMID: 30459801

 

New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics.

Hu W, Hua X, Zhang Q, Wang J, Shen Q, Zhang X, Wang K, Yu Q, Lin YR, Ming R, Zhang J.

BMC Plant Biol. 2018 Nov 7;18(1):270. doi: 10.1186/s12870-018-1495-y.

PMID: 30404601

 

Machine learning approaches for predicting high cost high need patient expenditures in health care.

Yang C, Delcher C, Shenkman E, Ranka S.

Biomed Eng Online. 2018 Nov 20;17(Suppl 1):131. doi: 10.1186/s12938-018-0568-3.

PMID: 30458798

 

Inhalation bioaccessibility of PAHs in PM2.5: Implications for risk assessment and toxicity prediction.

Li Y, Juhasz AL, Ma LQ, Cui X.

Sci Total Environ. 2019 Feb 10;650(Pt 1):56-64. doi: 10.1016/j.scitotenv.2018.08.246. Epub 2018 Aug 21.

PMID: 30195131

 

Reclassification of Xanthomonas gardneri (ex Šutič 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trébaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses.

Timilsina S, Kara S, Jacques MA, Potnis N, Minsavage GV, Vallad GE, Jones JB, Fischer-Le Saux M.

Int J Syst Evol Microbiol. 2018 Nov 20. doi: 10.1099/ijsem.0.003104. [Epub ahead of print]

PMID: 30457512

 

Qualitative study of system-level factors related to genomic implementation.

Zebrowski AM, Ellis DE, Barg FK, Sperber NR, Bernhardt BA, Denny JC, Dexter PR, Ginsburg GS, Horowitz CR, Johnson JA, Levy MA, Orlando LA, Pollin TI, Skaar TC, Kimmel SE.

Genet Med. 2018 Nov 23. doi: 10.1038/s41436-018-0378-9. [Epub ahead of print]

PMID: 30467402

 

Clinically Relevant Outcome Measures for the I307N Rhodopsin Mouse: A Model of Inducible Autosomal Dominant Retinitis Pigmentosa.

Massengill MT, Young B, Patel D, Jafri F, Sabogal E, Ash N, Li H, Ildefonso CJ, Lewin AS.

Invest Ophthalmol Vis Sci. 2018 Nov 1;59(13):5417-5430. doi: 10.1167/iovs.18-25345.

PMID: 30452595

About the Author