UFGI Publication Round-up: Week 1/25/21

Super-enhancer mediated regulation of adult β-globin gene expression: the role of eRNA and Integrator.

Gurumurthy A, Yu DT, Stees JR, Chamales P, Gavrilova E, Wassel P, Li L, Stribling D, Chen J, Brackett M, Ishov AM, Xie M, Bungert J.
Nucleic Acids Res. 2021 Jan 21:gkab002. doi: 10.1093/nar/gkab002. Online ahead of print.

PMID: 33476375

Green giant – a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny.

Daniell H, Jin S, Zhu XG, Gitzendanner MA, Soltis DE, Soltis PS.
Plant Biotechnol J. 2021 Jan 23. doi: 10.1111/pbi.13556. Online ahead of print.

PMID: 33484606

Varied Expression of Senescence-Associated and Ethylene-Related Genes during Postharvest Storage of Brassica Vegetables.

Ahlawat Y, Liu T.
Int J Mol Sci. 2021 Jan 15;22(2):E839. doi: 10.3390/ijms22020839.

PMID: 33467698

Targeting Notch and EGFR signaling in human mucoepidermoid carcinoma.

Ni W, Chen Z, Zhou X, Yang R, Yu M, Lu J, Kaye FJ, Wu L.
Signal Transduct Target Ther. 2021 Jan 21;6(1):27. doi: 10.1038/s41392-020-00388-0.

PMID: 33473104

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes.

Balzano-Nogueira L, Ramirez R, Zamkovaya T, Dailey J, Ardissone AN, Chamala S, Serrano-Quílez J, Rubio T, Haller MJ, Concannon P, Atkinson MA, Schatz DA, Triplett EW, Conesa A.
Genome Biol. 2021 Jan 21;22(1):39. doi: 10.1186/s13059-021-02262-w.

PMID: 33478573

Exocrine Pancreas Dysfunction in Type 1 Diabetes.

Foster TP, Bruggeman B, Campbell-Thompson M, Atkinson MA, Haller MJ, Schatz DA.
Endocr Pract. 2020 Dec;26(12):1505-1513. doi: 10.4158/EP-2020-0295.

PMID: 33471743

Transcriptome alterations in myotonic dystrophy frontal cortex.

Otero BA, Poukalov K, Hildebrandt RP, Thornton CA, Jinnai K, Fujimura H, Kimura T, Hagerman KA, Sampson JB, Day JW, Wang ET.
Cell Rep. 2021 Jan 19;34(3):108634. doi: 10.1016/j.celrep.2020.108634.

PMID: 33472074

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients.

Rubio T, Felipo V, Tarazona S, Pastorelli R, Escudero-García D, Tosca J, Urios A, Conesa A, Montoliu C.
Sci Rep. 2021 Jan 21;11(1):1907. doi: 10.1038/s41598-020-80941-7.

PMID: 33479266

Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis.

Wu R, Prabhu R, Ozkan A, Sitharam M.
PLoS Comput Biol. 2020 Oct 20;16(10):e1008357. doi: 10.1371/journal.pcbi.1008357. eCollection 2020 Oct.

PMID: 33079933

pH-Induced Conformational Changes of Human Bocavirus Capsids.

Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Söderlund-Venermo M, Agbandje-McKenna M.
J Virol. 2021 Jan 20:JVI.02329-20. doi: 10.1128/JVI.02329-20. Online ahead of print.

PMID: 33472934

Considerations for Systemic Use of Gene Therapy.

Byrne BJ, Corti M, Muntoni F.
Mol Ther. 2021 Jan 14:S1525-0016(21)00016-2. doi: 10.1016/j.ymthe.2021.01.016. Online ahead of print.

PMID: 33485465

Anomalous incisor morphology indicates tissue-specific roles for Tfap2a and Tfap2b in tooth development.

Woodruff ED, Gutierrez GC, Van Otterloo E, Williams T, Cohn MJ.
Dev Biol. 2021 Jan 15:S0012-1606(21)00002-6. doi: 10.1016/j.ydbio.2020.12.017. Online ahead of print.

PMID: 33460639

Yang H, Liang X, Zhao Y, Gu X, Mao Z, Zeng Q, Chen H, Martyniuk CJ.
Ecotoxicol Environ Saf. 2021 Jan 15;208:111700. doi: 10.1016/j.ecoenv.2020.111700. Epub 2020 Nov 23.

PMID: 33396031

Evaluation and comparison of the mitochondrial and developmental toxicity of three strobilurins in zebrafish embryo/larvae.

Yang L, Huang T, Li R, Souders CL 2nd, Rheingold S, Tischuk C, Li N, Zhou B, Martyniuk CJ.
Environ Pollut. 2021 Feb 1;270:116277. doi: 10.1016/j.envpol.2020.116277. Epub 2020 Dec 11.

PMID: 33360065

Kaposi’s sarcoma-associated herpesvirus latency-associated nuclear antigen dysregulates expression of MCL-1 by targeting FBW7.

Kim YJ, Kim Y, Kumar A, Kim CW, Toth Z, Cho NH, Lee HR.
PLoS Pathog. 2021 Jan 20;17(1):e1009179. doi: 10.1371/journal.ppat.1009179. eCollection 2021 Jan.

PMID: 33471866

Modulation of Leukocytes of the Innate Arm of the Immune System as a Potential Approach to Prevent the Onset and Progression of Type 1 Diabetes.

Petrelli A, Atkinson MA, Pietropaolo M, Giannoukakis N.
Diabetes. 2021 Feb;70(2):313-322. doi: 10.2337/dbi20-0026.

PMID: 33472941

Prdm1 overexpression causes a photoreceptor fate-shift in nascent, but not mature, bipolar cells.

Goodson NB, Park KU, Silver JS, Chiodo VA, Hauswirth WW, Brzezinski JA 4th.
Dev Biol. 2020 Aug 15;464(2):111-123. doi: 10.1016/j.ydbio.2020.06.003. Epub 2020 Jun 17.

PMID: 32562755

Detection of heartworm antigen without cross-reactivity to helminths and protozoa following heat treatment of canine serum.

Gruntmeir JM, Thompson NM, Long MT, Blagburn BL, Walden HDS.
Parasit Vectors. 2021 Jan 22;14(1):71. doi: 10.1186/s13071-020-04573-6.

PMID: 33482897

An improved method for specific-target preamplification PCR analysis of single blastocysts useful for embryo sexing and high-throughput gene expression analysis.

Xiao Y, Sosa F, de Armas LR, Pan L, Hansen PJ.
J Dairy Sci. 2021 Jan 14:S0022-0302(21)00057-6. doi: 10.3168/jds.2020-19497. Online ahead of print.

PMID: 33455782

Actions of putative embryokines on development of the preimplantation bovine embryo to the blastocyst stage.

Sang L, Ortiz W, Xiao Y, Estrada-Cortes E, Jannaman EA, Hansen PJ.
J Dairy Sci. 2020 Dec;103(12):11930-11944. doi: 10.3168/jds.2020-19068. Epub 2020 Oct 9.

PMID: 33041033

Influence of rootstocks on fruit physical and chemical properties of peach cv. UFSun.

Shahkoomahally S, Chang Y, Brecht JK, Chaparro JX, Sarkhosh A.
Food Sci Nutr. 2020 Dec 1;9(1):401-413. doi: 10.1002/fsn3.2005. eCollection 2021 Jan.

PMID: 33473302

The impact of COVID-19 on disordered eating behavior: a qualitative analysis of social media users’ responses to the global pandemic.

Nutley SK, Falise AM, Henderson R, Apostolou V, Mathews CA, Striley CW.
JMIR Ment Health. 2021 Jan 16. doi: 10.2196/26011. Online ahead of print.

PMID: 33465035

Application of Carbon-13 Isotopomer Analysis to Assess Perinatal Myocardial Glucose Metabolism in Sheep.

Ragavan M, Li M, Giacalone AG, Wood CE, Keller-Wood M, Merritt ME.
Metabolites. 2021 Jan 5;11(1):33. doi: 10.3390/metabo11010033.

PMID: 33466367

Investigating the role of striatal dopamine receptor 2 in motor coordination and balance: insights into the pathogenesis of DYT1 dystonia.

Liu Y, Xing H, Yokoi F, Vaillancourt DE, Li Y.
Behav Brain Res. 2021 Jan 18:113137. doi: 10.1016/j.bbr.2021.113137. Online ahead of print.

PMID: 33476687

The economic cost of metritis in dairy herds.

Pérez-Báez J, Silva TV, Risco CA, Chebel RC, Cunha F, De Vries A, Santos JEP, Lima FS, Pinedo P, Schuenemann GM, Bicalho RC, Gilbert RO, Rodrigez-Zas S, Seabury CM, Rosa G, Thatcher WW, Galvão KN.
J Dairy Sci. 2021 Jan 14:S0022-0302(21)00028-X. doi: 10.3168/jds.2020-19125. Online ahead of print.

PMID: 33455790

Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements.

Tagliamonte MS, Abid N, Borocci S, Sangiovanni E, Ostrov DA, Kosakovsky Pond SL, Salemi M, Chillemi G, Mavian C.
Int J Mol Sci. 2020 Dec 23;22(1):80. doi: 10.3390/ijms22010080.

PMID: 33374797

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants.

Russell JT, Lauren Ruoss J, de la Cruz D, Li N, Bazacliu C, Patton L, McKinley KL, Garrett TJ, Polin RA, Triplett EW, Neu J.
Sci Rep. 2021 Jan 21;11(1):1943. doi: 10.1038/s41598-021-80982-6.

PMID: 33479274

Synaptic processes and immune-related pathways implicated in Tourette syndrome.

Tsetsos F, Yu D, Sul JH, Huang AY, Illmann C, Osiecki L, Darrow SM, Hirschtritt ME, Greenberg E, Muller-Vahl KR, Stuhrmann M, Dion Y, Rouleau GA, Aschauer H, Stamenkovic M, Schlögelhofer M, Sandor P, Barr CL, Grados MA, Singer HS, Nöthen MM, Hebebrand J, Hinney A, King RA, Fernandez TV, Barta C, Tarnok Z, Nagy P, Depienne C, Worbe Y, Hartmann A, Budman CL, Rizzo R, Lyon GJ, McMahon WM, Batterson JR, Cath DC, Malaty IA, Okun MS, Berlin C, Woods DW, Lee PC, Jankovic J, Robertson MM, Gilbert DL, Brown LW, Coffey BJ, Dietrich A, Hoekstra PJ, Kuperman S, Zinner SH, Wagner M, Knowles JA, Jeremy Willsey A, Tischfield JA, Heiman GA, Cox NJ, Freimer NB, Neale BM, Davis LK, Coppola G, Mathews CA, Scharf JM, Paschou P; Tourette Association of America International Consortium for Genetics, Barr CL, Batterson JR, Berlin C, Budman CL, Cath DC, Coppola G, Cox NJ, Darrow S, Davis LK, Dion Y, Freimer NB, Grados MA, Greenberg E, Hirschtritt ME, Huang AY, Illmann C, King RA, Kurlan R, Leckman JF, Lyon GJ, Malaty IA, Mathews CA, McMahon WM, Neale BM, Okun MS, Osiecki L, Robertson MM, Rouleau GA, Sandor P, Scharf JM, Singer HS, Smit JH, Sul JH, Yu D; Gilles de la Tourette GWAS Replication Initiative, Aschauer HAH, Barta C, Budman CL, Cath DC, Depienne C, Hartmann A, Hebebrand J, Konstantinidis A, Mathews CA, Müller-Vahl K, Nagy P, Nöthen MM, Paschou P, Rizzo R, Rouleau GA, Sandor P, Scharf JM, Schlögelhofer M, Stamenkovic M, Stuhrmann M, Tsetsos F, Tarnok Z, Wolanczyk T, Worbe Y; Tourette International Collaborative Genetics Study, Brown L, Cheon KA, Coffey BJ, Dietrich A, Fernandez TV, Garcia-Delgar B, Gilbert D, Grice DE, Hagstrøm J, Hedderly T, Heiman GA, Heyman I, Hoekstra PJ, Huyser C, Kim YK, Kim YS, King RA, Koh YJ, Kook S, Kuperman S, Leventhal BL, Madruga-Garrido M, Mir P, Morer A, Münchau A, Plessen KJ, Roessner V, Shin EY, Song DH, Song J, Tischfield JA, Willsey AJ, Zinner S; Psychiatric Genomics Consortium Tourette Syndrome Working Group, Aschauer H, Barr CL, Barta C, Batterson JR, Berlin C, Brown L, Budman CL, Cath DC, Coffey BJ, Coppola G, Cox NJ, Darrow S, Davis LK, Depienne C, Dietrich A, Dion Y, Fernandez T, Freimer NB, Gilbert D, Grados MA, Greenberg E, Hartmann A, Hebebrand J, Heiman G, Hirschtritt ME, Hoekstra P, Huang AY, Illmann C, Jankovic J, King RA, Kuperman S, Lee PC, Lyon GJ, Malaty IA, Mathews CA, McMahon WM, Müller-Vahl K, Nagy P, Neale BM, Nöthen MM, Okun MS, Osiecki L, Paschou P, Rizzo R, Robertson MM, Rouleau GA, Sandor P, Scharf JM, Schlögelhofer M, Singer HS, Stamenkovic M, Stuhrmann M, Sul JH, Tarnok Z, Tischfield J, Tsetsos F, Willsey AJ, Woods D, Worbe Y, Yu D, Zinner S.
Transl Psychiatry. 2021 Jan 18;11(1):56. doi: 10.1038/s41398-020-01082-z.

PMID: 33462189