UFGI Publication Round-up: Week of 4/1/24

Liu Y, Manavalan P, Siddiqi K, Cook RL, Prosperi M.

AIDS Behav. 2024 Mar 29. doi: 10.1007/s10461-024-04325-y. Online ahead of print.

PMID: 38551720

Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning model.

Ma X, Thela SR, Zhao F, Yao B, Wen Z, Jin P, Zhao J, Chen L.

bioRxiv [Preprint]. 2024 Mar 6:2024.03.04.583444. doi: 10.1101/2024.03.04.583444.

PMID: 38496575

PROTAC-Mediated Dual Degradation of BCL-xL and BCL-2 Is a Highly Effective Therapeutic Strategy in Small-Cell Lung Cancer.

Khan S, Cao L, Wiegand J, Zhang P, Zajac-Kaye M, Kaye FJ, Zheng G, Zhou D.

Cells. 2024 Mar 17;13(6):528. doi: 10.3390/cells13060528.

PMID: 38534371

Biodiversity and productivity in eastern US forests.

Liu Y, Hogan JA, Lichstein JW, Guralnick RP, Soltis DE, Soltis PS, Scheiner SM.

Proc Natl Acad Sci U S A. 2024 Apr 2;121(14):e2314231121. doi: 10.1073/pnas.2314231121. Epub 2024 Mar 25.

PMID: 38527197

Substantial urbanization-driven declines of larval and adult moths in a subtropical environment.

Belitz MW, Sawyer A, Hendrick LK, Kawahara AY, Guralnick RP.

Glob Chang Biol. 2024 Mar;30(3):e17241. doi: 10.1111/gcb.17241.

PMID: 38525809

Femoral Structure and Biomechanical Characteristics in Sanfilippo Syndrome Type-B Mice.

Ashby FJ, Castillo EJ, Ludwig Y, Andraka NK, Chen C, Jamieson JC, Kabbej N, Sommerville JD, Aguirre JI, Heldermon CD.

Int J Mol Sci. 2023 Sep 12;24(18):13988. doi: 10.3390/ijms241813988.

PMID: 37762291

Negevirus Piura Suppresses Zika Virus Replication in Mosquito Cells.

Carvalho VL, Prakoso D, Schwarz ER, Logan TD, Nunes BTD, Beachboard SE, Long MT.

Viruses. 2024 Feb 24;16(3):350. doi: 10.3390/v16030350.

PMID: 38543716

Identification and Analysis of Axolotl Homologs for Proteins Implicated in Human Neurodegenerative Proteinopathies.

James LM, Strickland Z, Lopez N, Whited JL, Maden M, Lewis J.

Genes (Basel). 2024 Feb 28;15(3):310. doi: 10.3390/genes15030310.

PMID: 38540368

Spaceflight effects on human vascular smooth muscle cell phenotype and function.

Scotti MM, Wilson BK, Bubenik JL, Yu F, Swanson MS, Allen JB.

NPJ Microgravity. 2024 Mar 28;10(1):41. doi: 10.1038/s41526-024-00380-w.

PMID: 38548798

Serum from pregnant donors induces human beta cell proliferation.

Sylvester-Armstrong KR, Reeder CF, Powell A, Becker MW, Hagan DW, Chen J, Mathews CE, Wasserfall CH, Atkinson MA, Egerman R, Phelps EA.

Islets. 2024 Dec 31;16(1):2334044. doi: 10.1080/19382014.2024.2334044. Epub 2024 Mar 27.

PMID: 38533763

Effect of Early vs Late Inguinal Hernia Repair on Serious Adverse Event Rates in Preterm Infants: A Randomized Clinical Trial.

HIP Trial Investigators; Blakely ML, Krzyzaniak A, Dassinger MS, Pedroza C, Weitkamp JH, Gosain A, Cotten M, Hintz SR, Rice H, Courtney SE, Lally KP, Ambalavanan N, Bendel CM, Bui KCT, Calkins C, Chandler NM, Dasgupta R, Davis JM, Deans K, DeUgarte DA, Gander J, Jackson CA, Keszler M, Kling K, Fenton SJ, Fisher KA, Hartman T, Huang EY, Islam S, Koch F, Lainwala S, Lesher A, Lopez M, Misra M, Overbey J, Poindexter B, Russell R, Stylianos S, Tamura DY, Yoder BA, Lucas D, Shaul D, Ham PB 3rd, Fitzpatrick C, Calkins K, Garrison A, de la Cruz D, Abdessalam S, Kvasnovsky C, Segura BJ, Shilyansky J, Smith LM, Tyson JE.

JAMA. 2024 Mar 26;331(12):1035-1044. doi: 10.1001/jama.2024.2302.

PMID: 38530261

Alternate routes to mnm⁵s²U synthesis in Gram-positive bacteria.

Jaroch M, Sun G, Tsui H-CT, Reed C, Sun J, Jörg M, Winkler ME, Rice KC, Dziergowska A, Stich TA, Dedon PC, Dos Santos PC, de Crécy-Lagard V.

J Bacteriol. 2024 Mar 29:e0045223. doi: 10.1128/jb.00452-23. Online ahead of print.

PMID: 38551342

Mapping the tRNA modification landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse.

Quaiyum S, Sun J, Marchand V, Sun G, Reed CJ, Motorin Y, Dedon PC, Minnick MF, de Crécy-Lagard V.

Front Microbiol. 2024 Mar 13;15:1369018. doi: 10.3389/fmicb.2024.1369018. eCollection 2024.

PMID: 38544857

Exposure to the antineoplastic ifosfamide alters molecular pathways related to cardiovascular function, increases heart rate, and induces hyperactivity in zebrafish (Danio rerio).

English CD, Kazi KJ, Konig I, Ivantsova E, Souders Ii CL, Martyniuk CJ.

Environ Toxicol Pharmacol. 2024 Mar 23;107:104427. doi: 10.1016/j.etap.2024.104427. Online ahead of print.

PMID: 38527598

OSCAA: A two-dimensional Gaussian mixture model for copy number variation association analysis.

Yu X, Luo X, Cai G, Xiao F.

Genet Epidemiol. 2024 Mar 27. doi: 10.1002/gepi.22558. Online ahead of print.

PMID: 38533840

Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3′-end of nick DNA.

Balu KE, Gulkis M, Almohdar D, Çağlayan M.

J Biol Chem. 2024 Mar 22:107216. doi: 10.1016/j.jbc.2024.107216. Online ahead of print.

PMID: 38522520

Development and crystal structures of a potent second-generation dual degrader of BCL-2 and BCL-xL.

Nayak D, Lv D, Yuan Y, Zhang P, Hu W, Nayak A, Ruben EA, Lv Z, Sung P, Hromas R, Zheng G, Zhou D, Olsen SK.

Nat Commun. 2024 Mar 29;15(1):2743. doi: 10.1038/s41467-024-46922-4.

PMID: 38548768

Emergence of Emotion Selectivity in Deep Neural Networks Trained to Recognize Visual Objects.

Liu P, Bo K, Ding M, Fang R.

PLoS Comput Biol. 2024 Mar 28;20(3):e1011943. doi: 10.1371/journal.pcbi.1011943. eCollection 2024 Mar.

PMID: 38547053

Graduate Student Literature Review: Exploring choline’s important roles as a nutrient for transition dairy cows.

Arshad U, Santos JEP.

J Dairy Sci. 2024 Mar 22:S0022-0302(24)00617-9. doi: 10.3168/jds.2023-24050. Online ahead of print.

PMID: 38522836

Febo M, Mahar R, Rodriguez NA, Buraima J, Pompilus M, Pinto AM, Grudny MM, Bruijnzeel AW, Merritt ME.

Front Aging Neurosci. 2024 Mar 8;16:1356086. doi: 10.3389/fnagi.2024.1356086. eCollection 2024.

PMID: 38524115

UFGI Publication Round-up: 4/1/24