UFGI Publication round-up 1/6-1/20

Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, Bracho-Garillo RG, Penton CR, Cole JR, Konstantinidis KT, Luo Y, Schuur EAG, Tiedje JM, Zhou J.

Microbiome. 2020 Jan 17;8(1):3. doi: 10.1186/s40168-019-0778-3.

PMID: 31952472

Risk Factors for Cardiovascular Disease (CVD) in Adults with Type 1 Diabetes: Findings from Prospective Real-life T1D Exchange Registry.

Shah VN, Bailey R, Wu M, Foster NC, Pop-Busui R, Katz M, Crandall J, Bacha F, Nadeau K, Libman I, Hiers P, Mizokami-Stout K, DiMeglio LA, Sherr J, Pratley R, Agarwal S, Snell-Bergeon J, Cengiz E, Polsky S, Mehta SN; T1D Exchange Registry.

J Clin Endocrinol Metab. 2020 Jan 19. pii: dgaa015. doi: 10.1210/clinem/dgaa015. [Epub ahead of print]

PMID: 31955209

Time-sensitive clinical concept embeddings learned from large electronic health records.

Xiang Y, Xu J, Si Y, Li Z, Rasmy L, Zhou Y, Tiryaki F, Li F, Zhang Y, Wu Y, Jiang X, Zheng WJ, Zhi D, Tao C, Xu H.

BMC Med Inform Decis Mak. 2019 Apr 9;19(Suppl 2):58. doi: 10.1186/s12911-019-0766-3.

PMID: 30961579

Structure-Specific Cleavage of an RNA Repeat Expansion with a Dimeric Small Molecule Is Advantageous over Sequence-Specific Recognition by an Oligonucleotide.

Benhamou RI, Angelbello AJ, Andrews RJ, Wang ET, Moss WN, Disney MD.

ACS Chem Biol. 2020 Jan 13. doi: 10.1021/acschembio.9b00958. [Epub ahead of print]

PMID: 31927948

Effect of prepartum energy intake and supplementation with ruminally protected choline on innate and adaptive immunity of multiparous Holstein cows.

Zenobi MG, Gardinal R, Zuniga JE, Mamedova LK, Driver JP, Barton BA, Santos JEP, Staples CR, Nelson CD.

J Dairy Sci. 2020 Jan 15. pii: S0022-0302(20)30031-X. doi: 10.3168/jds.2019-17378. [Epub ahead of print]

PMID: 31954584

Meta-analysis of the effects of prepartum dietary protein on performance of dairy cows.

Husnain A, Santos JEP.

J Dairy Sci. 2019 Nov;102(11):9791-9813. doi: 10.3168/jds.2018-16043. Epub 2019 Sep 5.

PMID: 31495616

Comparative Proteomic Analysis in Scar-Free Skin Regeneration in Acomys cahirinus and Scarring Mus musculus.

Yoon JH, Cho K, Garrett TJ, Finch P, Maden M.

Sci Rep. 2020 Jan 13;10(1):166. doi: 10.1038/s41598-019-56823-y.

PMID: 31932597

Heat-Responsive Proteomics of a Heat-Sensitive Spinach Variety.

Li S, Yu J, Li Y, Zhang H, Bao X, Bian J, Xu C, Wang X, Cai X, Wang Q, Wang P, Guo S, Miao Y, Chen S, Qin Z, Dai S.

Int J Mol Sci. 2019 Aug 8;20(16). pii: E3872. doi: 10.3390/ijms20163872.

PMID: 31398909

A selective fungal transport organ (mycangium) maintains coarse phylogenetic congruence between fungus-farming ambrosia beetles and their symbionts.

Skelton J, Johnson AJ, Jusino MA, Bateman CC, Li Y, Hulcr J.

Proc Biol Sci. 2019 Jan 16;286(1894):20182127. doi: 10.1098/rspb.2018.2127.

PMID: 30963860

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations.

Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D.

New Phytol. 2019 Jan;221(2):818-833. doi: 10.1111/nph.15449. Epub 2018 Sep 25.

PMID: 30252143

Members of chitin synthase family in Metarhizium acridum differentially affect fungal growth, stress tolerances, cell wall integrity and virulence.

Zhang J, Jiang H, Du Y, Keyhani NO, Xia Y, Jin K.

PLoS Pathog. 2019 Aug 28;15(8):e1007964. doi: 10.1371/journal.ppat.1007964. eCollection 2019 Aug.

PMID: 31461507

Characterization of Bacterial and Fungal Communities Reveals Novel Consortia in Tropical Oligotrophic Peatlands.

Morrison ES, Thomas P, Ogram A, Kahveci T, Turner BL, Chanton JP.

Microb Ecol. 2020 Jan 15. doi: 10.1007/s00248-020-01483-z. [Epub ahead of print]

PMID: 31942666

Encouraging and Unsettling Findings in Long-Term Follow-up of AAV Gene Transfer.

Herzog RW.

Mol Ther. 2020 Jan 16. pii: S1525-0016(20)30031-9. doi: 10.1016/j.ymthe.2020.01.007. [Epub ahead of print] No abstract available.

PMID: 31951831

The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education.

Lendemer J, Thiers B, Monfils AK, Zaspel J, Ellwood ER, Bentley A, LeVan K, Bates J, Jennings D, Contreras D, Lagomarsino L, Mabee P, Ford LS, Guralnick R, Gropp RE, Revelez M, Cobb N, Seltmann K, Aime MC.

Bioscience. 2020 Jan 1;70(1):23-30. doi: 10.1093/biosci/biz140. Epub 2019 Nov 22. No abstract available.

PMID: 31949317

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations.

Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D.

New Phytol. 2019 Jan;221(2):818-833. doi: 10.1111/nph.15449. Epub 2018 Sep 25.

PMID: 30252143

Human Cytomegalovirus Latency and Myelosuppression: A microRNA-Dependent Yin and Yang Regulatory Loop.

Gay L, Renne R.

Cell Host Microbe. 2020 Jan 8;27(1):8-10. doi: 10.1016/j.chom.2019.12.008.

PMID: 31951824

Identification of murine gammaherpesvirus 68 miRNA-mRNA hybrids reveals miRNA target conservation among gammaherpesviruses including host translation and protein modification machinery.

Bullard WL, Kara M, Gay LA, Sethuraman S, Wang Y, Nirmalan S, Esemenli A, Feswick A, Hoffman BA, Renne R, Tibbetts SA.

PLoS Pathog. 2019 Aug 8;15(8):e1007843. doi: 10.1371/journal.ppat.1007843. eCollection 2019 Aug.

PMID: 31393953

Heat-Responsive Proteomics of a Heat-Sensitive Spinach Variety.

Li S, Yu J, Li Y, Zhang H, Bao X, Bian J, Xu C, Wang X, Cai X, Wang Q, Wang P, Guo S, Miao Y, Chen S, Qin Z, Dai S.

Int J Mol Sci. 2019 Aug 8;20(16). pii: E3872. doi: 10.3390/ijms20163872.

PMID: 31398909

Gestational and lactational exposure to gossypol alters the testis transcriptome.

Louvandini H, Corrêa PS, Amorín R, Liu L, Ieda EH, Jimenez CR, Tsai SM, McManus CM, Peñagaricano F.

BMC Genomics. 2020 Jan 17;21(1):59. doi: 10.1186/s12864-020-6487-2.

PMID: 31952482

Characterization of Bacterial and Fungal Communities Reveals Novel Consortia in Tropical Oligotrophic Peatlands.

Morrison ES, Thomas P, Ogram A, Kahveci T, Turner BL, Chanton JP.

Microb Ecol. 2020 Jan 15. doi: 10.1007/s00248-020-01483-z. [Epub ahead of print]

PMID: 31942666

Needs Assessment: What Are the Barriers to Use of Equine Genetic Testing?

Hammons V, Brooks SA, Wickens C.

J Equine Vet Sci. 2020 Feb;85:102876. doi: 10.1016/j.jevs.2019.102876. Epub 2019 Dec 4.

PMID: 31952642

TpiA is a Key Metabolic Enzyme That Affects Virulence and Resistance to Aminoglycoside Antibiotics through CrcZ in Pseudomonas aeruginosa.

Xia Y, Wang D, Pan X, Xia B, Weng Y, Long Y, Ren H, Zhou J, Jin Y, Bai F, Cheng Z, Jin S, Wu W.

mBio. 2020 Jan 7;11(1). pii: e02079-19. doi: 10.1128/mBio.02079-19.

PMID: 31911486

Visible Light-Induced Borylation of C-O, C-N, and C-X Bonds.

Jin S, Dang HT, Haug GC, He R, Nguyen VD, Nguyen VT, Arman HD, Schanze KS, Larionov OV.

J Am Chem Soc. 2020 Jan 10. doi: 10.1021/jacs.9b12519. [Epub ahead of print]

PMID: 31899630

Expansion, in vivo-ex vivo cycling, and genetic manipulation of primary human hepatocytes.

Michailidis E, Vercauteren K, Mancio-Silva L, Andrus L, Jahan C, Ricardo-Lax I, Zou C, Kabbani M, Park P, Quirk C, Pyrgaki C, Razooky B, Verhoye L, Zoluthkin I, Lu WY, Forbes SJ, Chiriboga L, Theise ND, Herzog RW, Suemizu H, Schneider WM, Shlomai A, Meuleman P, Bhatia SN, Rice CM, de Jong YP.

Proc Natl Acad Sci U S A. 2020 Jan 8. pii: 201919035. doi: 10.1073/pnas.1919035117. [Epub ahead of print]

PMID: 31915293

Expression of New Pteris vittata Phosphate Transporter PvPht1;4 Reduces Arsenic Translocation from the Roots to Shoots in Tobacco Plants. Sun D, Feng H, Li X, Ai H, Sun S, Chen Y, Xu G, Rathinasabapathi B, Cao Y, Ma LQ.

Environ Sci Technol. 2020 Jan 7. doi: 10.1021/acs.est.9b05486. [Epub ahead of print]

PMID: 31825207

Epigenetic factor siRNA screen during primary KSHV infection identifies novel host restriction factors for the lytic cycle of KSHV.

Naik NG, Nguyen TH, Roberts L, Fischer LT, Glickman K, Golas G, Papp B, Toth Z.

PLoS Pathog. 2020 Jan 10;16(1):e1008268. doi: 10.1371/journal.ppat.1008268. [Epub ahead of print]

PMID: 31923286

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats.

Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R.

mBio. 2020 Jan 7;11(1). pii: e02901-19. doi: 10.1128/mBio.02901-19.

PMID: 31911491

Perception of damaged self in plants.

Li Q, Wang C, Mou Z.

Plant Physiol. 2020 Jan 6. pii: pp.01242.2019. doi: 10.1104/pp.19.01242. [Epub ahead of print] No abstract available.

PMID: 31907298

A Scoping Review of the Evidence Behind CYP2D6 Inhibitor Classifications.

Cicali EJ, Smith DM, Duong BQ, Kovar LG, Cavallari LH, Johnson JA.

Clin Pharmacol Ther. 2020 Jan 7. doi: 10.1002/cpt.1768. [Epub ahead of print]

PMID: 31910286

Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions.

Nowialis P, Lopusna K, Opavska J, Haney SL, Abraham A, Sheng P, Riva A, Natarajan A, Guryanova O, Simpson M, Hlady R, Xie M, Opavsky R.

Nat Commun. 2019 Sep 26;10(1):4374. doi: 10.1038/s41467-019-12355-7.

PMID: 31558711

Transfer of Xanthomonas campestris pv. arecae and X. campestris pv. musacearum to X. vasicola(Vauterin) as X. vasicola pv. arecae comb. nov. and X. vasicola pv. musacearum comb. nov. and Description of X. vasicola pv. vasculorum pv. nov.

Studholme DJ, Wicker E, Abrare SM, Aspin A, Bogdanove A, Broders K, Dubrow Z, Grant M, Jones JB, Karamura G, Lang J, Leach J, Mahuku G, Nakato GV, Coutinho T, Smith J, Bull CT.

Phytopathology. 2020 Jan 10:PHYTO03190098LE. doi: 10.1094/PHYTO-03-19-0098-LE. [Epub ahead of print]

PMID: 31922946

Genome characterization of cetaceanpox virus from a managed Indo-Pacific bottlenose dolphin (Tursiops aduncus).

Rodrigues TCS, Subramaniam K, Varsani A, McFadden G, Schaefer AM, Bossart GD, Romero CH, Waltzek TB.

Virus Res. 2020 Jan 7:197861. doi: 10.1016/j.virusres.2020.197861. [Epub ahead of print]

PMID: 31923559

Genome-enable prediction for health traits using high-density SNP panel in US Holstein cattle.

Lopes F, Rosa G, Pinedo P, Santos JEP, Chebel RC, Galvao KN, Schuenemann GM, Bicalho RC, Gilbert RO, Rodrigez-Zas S, Seabury CM, Thatcher W.

Anim Genet. 2020 Jan 7. doi: 10.1111/age.12892. [Epub ahead of print]

PMID: 31909828

Persistently increased cell-free DNA concentrations only modestly contribute to outcome and host response in sepsis survivors with chronic critical illness.

Hawkins RB, Stortz JA, Holden DC, Wang Z, Raymond SL, Cox MC, Brakenridge SC, Moore FA, Moldawer LL, Efron PA.

Surgery. 2019 Dec 31. pii: S0039-6060(19)30774-3. doi: 10.1016/j.surg.2019.11.018. [Epub ahead of print]

PMID: 31898953

Prognostic value of NT-proBNP levels in the acute phase of sepsis on lower long-term physical function and muscle strength in sepsis survivors.

Custodero C, Wu Q, Ghita GL, Anton SD, Brakenridge SC, Brumback BA, Efron PA, Gardner AK, Leeuwenburgh C, Moldawer LL, Petersen JW, Moore FA, Mankowski RT.

Crit Care. 2019 Jun 24;23(1):230. doi: 10.1186/s13054-019-2505-7.

PMID: 31234943

Defective coronary vessel organization and reduction of VEGF-A in mouse embryonic hearts with gestational mild hypoxia.

Cai LX, Alkassis FF, Kasahara H.

Dev Dyn. 2020 Jan 3. doi: 10.1002/dvdy.149. [Epub ahead of print]

PMID: 31900966

Characterization and functional roles of paternal RNAs in 2-4 cell bovine embryos.

Gross N, Strillacci MG, Peñagaricano F, Khatib H.

Sci Rep. 2019 Dec 30;9(1):20347. doi: 10.1038/s41598-019-55868-3.

PMID: 31889064

Association of lipid-related genes implicated in conceptus elongation with female fertility traits in dairy cattle.

Abdollahi-Arpanahi R, Carvalho MR, Ribeiro ES, Peñagaricano F.

J Dairy Sci. 2019 Nov;102(11):10020-10029. doi: 10.3168/jds.2019-17068. Epub 2019 Aug 30.

PMID: 31477299

Response to: Heterogeneous Treatment Response by Race Cannot Be Claimed in the Absence of Evidence.

Mehanna M, Wang Z, Gong Y, McDonough CW, Beitelshees AL, Gums JG, Chapman AB, Schwartz GL, Bailey KR, Johnson JA, Turner ST, Cooper-Dehoff RM.

Am J Hypertens. 2019 Dec 31. pii: hpz168. doi: 10.1093/ajh/hpz168. [Epub ahead of print] No abstract available.

PMID: 31891170

Improved survival and overt “dystonic” symptoms in a torsinA hypofunction mouse model.

Yokoi F, Jiang F, Dexter K, Salvato B, Li Y.

Behav Brain Res. 2019 Dec 28:112451. doi: 10.1016/j.bbr.2019.112451. [Epub ahead of print]

PMID: 31891745

AMPK May Play an Important Role in the Retinal Metabolic Ecosystem.

Brown EE, Lewin AS, Ash JD.

Adv Exp Med Biol. 2019;1185:477-481. doi: 10.1007/978-3-030-27378-1_78.

PMID: 31884657

Biopsychosocial Influences on Shoulder Pain: Analyzing the Temporal Ordering of Post-Operative Recovery.

Simon CB, Valencia C, Coronado RA, Wu SS, Li Z, Dai Y, Farmer KW, Moser MM, Wright TW, Fillingim RB, George SZ.

J Pain. 2019 Dec 28. pii: S1526-5900(18)31057-5. doi: 10.1016/j.jpain.2019.11.008. [Epub ahead of print]

PMID: 31891763

Islet amyloidosis in a child with type 1 diabetes.

Beery ML, Jacobsen LM, Atkinson MA, Butler AE, Campbell-Thompson M.

Islets. 2019;11(2):44-49. doi: 10.1080/19382014.2019.1599707. Epub 2019 May 14.

PMID: 31084520

Mechanisms of in utero cortisol effects on the newborn heart revealed by transcriptomic modeling.

Antolic A, Li M, Richards EM, Curtis CW, Wood CE, Keller-Wood M.

Am J Physiol Regul Integr Comp Physiol. 2019 Apr 1;316(4):R323-R337. doi: 10.1152/ajpregu.00322.2018. Epub 2019 Jan 9.

PMID: 30624972

Methods for Target Enrichment Sequencing via Probe Capture in Legumes.

Peng Z, Paudel D, Wang L, Luo Z, You Q, Wang J.

Methods Mol Biol. 2020;2107:199-231. doi: 10.1007/978-1-0716-0235-5_10.

PMID: 31893449

Beta-blocker Dose Stratifies Mortality Risk in a Racially Diverse Heart Failure Population.

Lteif C, Arwood MJ, Kansal M, Cavallari LH, Desai AA, Duarte JD.

J Cardiovasc Pharmacol. 2019 Dec 31. doi: 10.1097/FJC.0000000000000779. [Epub ahead of print]

PMID: 31895871

The fungal mitochondrial membrane protein, BbOhmm, antagonistically controls hypoxia tolerance.

He Z, Zhao X, Gao Y, Keyhani NO, Wang H, Deng J, Lu Z, Kan Y, Luo Z, Zhang Y.

Environ Microbiol. 2020 Jan 1. doi: 10.1111/1462-2920.14910. [Epub ahead of print]

PMID: 31894607

Efficacy of Glecaprevir and Pibrentasvir in Patients With Genotype 1 Hepatitis C Virus Infection With Treatment Failure After NS5A Inhibitor Plus Sofosbuvir Therapy.

Lok AS, Sulkowski MS, Kort JJ, Willner I, Reddy KR, Shiffman ML, Hassan MA, Pearlman BL, Hinestrosa F, Jacobson IM, Morelli G, Peter JA, Vainorius M, Michael LC, Fried MW, Wang GP, Lu W, Larsen L, Nelson DR.

Gastroenterology. 2019 Dec;157(6):1506-1517.e1. doi: 10.1053/j.gastro.2019.08.008. Epub 2019 Aug 8.

PMID: 31401140

Exploration of cytochrome P450 inhibition mediated drug-drug interaction potential of kratom alkaloids.

Kamble SH, Sharma A, King TI, Berthold EC, León F, Meyer PKL, Kanumuri SRR, McMahon LR, McCurdy CR, Avery BA.

Toxicol Lett. 2020 Feb 1;319:148-154. doi: 10.1016/j.toxlet.2019.11.005. Epub 2019 Nov 7.

PMID: 31707106