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Faculty Publications 2015-2016

Faculty Publications 2015-2016

PublicationsInCties JCR  
Pinard MA, Kurian JJ, Aggarwal M, Agbandje-McKenna M, McKenna R. Cryoannealing-induced space-group transition of crystals of the carbonic anhydrase psCA3. Acta Crystallogr F Struct Biol Commun. PMID: 27380376 [PubMed - in process] 2016 Jul;72(Pt 7):573-7. doi: 10.1107/S2053230X16009286. Epub 2016 Jun 28.0.647
Huang LY, Patel A, Ng R, Miller EB, Halder S, McKenna R, Asokan A, Agbandje-McKenna M. Characterization of the Adeno-Associated Virus 1 and 6 Sialic Acid Binding Site. J Virol. PMID: 26962225 [PubMed - in process] 2016 May 12;90(11):5219-30. doi: 10.1128/JVI.00161-16. Print 2016 Jun 1.4.606
Kailasan S, Agbandje-McKenna M, Parrish CR. Parvovirus Family Conundrum: What Makes a Killer? Annu Rev Virol. PMID: 26958923 [PubMed - in process] 2015 Nov;2(1):425-50. doi: 10.1146/annurev-virology-100114-055150. Epub 2015 Aug 26.3.345
Kailasan S, Garrison J, Ilyas M, Chipman P, McKenna R, Kantola K, Söderlund-Venermo M, Kučinskaitė-Kodzė I, Žvirblienė A, Agbandje-McKenna M. Mapping Antigenic Epitopes on the Human Bocavirus Capsid. J Virol. PMID: 26912619 [PubMed - indexed for MEDLINE] 2016 Apr 14;90(9):4670-80. doi: 10.1128/JVI.02998-15. Print 2016 May.4.606
Boye SL, Bennett A, Scalabrino ML, McCullough KT, Van Vliet K, Choudhury S, Ruan Q, Peterson J, Agbandje-McKenna M, Boye SE. Impact of Heparan Sulfate Binding on Transduction of Retina by Recombinant Adeno-Associated Virus Vectors. J Virol. PMID: 26865709 [PubMed - indexed for MEDLINE] 2016 Mar 28;90(8):4215-31. doi: 10.1128/JVI.00200-16. Print 2016 Apr.4.606
Li B, Ma W, Ling C, Van Vliet K, Huang LY, Agbandje-McKenna M, Srivastava A, Aslanidi GV. Site-Directed Mutagenesis of Surface-Exposed Lysine Residues Leads to Improved Transduction by AAV2, But Not AAV8, Vectors in Murine Hepatocytes In Vivo. Hum Gene Ther Methods. PMID: 26421998 [PubMed - indexed for MEDLINE] 2015 Dec;26(6):211-20. doi: 10.1089/hgtb.2015.115. Epub 2015 Oct 27.1.986
Halder S, Van Vliet K, Smith JK, Duong TT, McKenna R, Wilson JM, Agbandje-McKenna M. Structure of neurotropic adeno-associated virus AAVrh.8. J Struct Biol. PMID: 26334681 [PubMed - indexed for MEDLINE] 2015 Oct;192(1):21-36. doi: 10.1016/j.jsb.2015.08.017. Epub 2015 Aug 31.2.57
Díaz-Torres NA, Mahon BP, Boone CD, Pinard MA, Tu C, Ng R, Agbandje-McKenna M, Silverman D, Scott K, McKenna R. Structural and biophysical characterization of the α-carbonic anhydrase from the gammaproteobacterium Thiomicrospira crunogena XCL-2: insights into engineering thermostable enzymes for CO2 sequestration. Acta Crystallogr D Biol Crystallogr. PMID: 26249355 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug;71(Pt 8):1745-56. doi: 10.1107/S1399004715012183. Epub 2015 Jul 31.2.512
Li C, Wu S, Albright B, Hirsch M, Li W, Tseng YS, Agbandje-McKenna M, McPhee S, Asokan A, Samulski RJ. Development of Patient-specific AAV Vectors After Neutralizing Antibody Selection for Enhanced Muscle Gene Transfer. Mol Ther. PMID: 26220272 [PubMed - in process] 2016 Feb;24(1):53-65. doi: 10.1038/mt.2015.134. Epub 2015 Jul 29.6.938
Pellé KG, Jiang RH, Mantel PY, Xiao YP, Hjelmqvist D, Gallego-Lopez GM, O T Lau A, Kang BH, Allred DR, Marti M. Shared elements of host-targeting pathways among apicomplexan parasites of differing lifestyles. Cell Microbiol. PMID: 25996544 [PubMed - indexed for MEDLINE] 2015 Nov;17(11):1618-39. doi: 10.1111/cmi.12460. Epub 2015 Jul 7.4.46
Altpeter F, Springer NM, Bartley LE, Blechl AE, Brutnell TP, Citovsky V, Conrad LJ, Gelvin SB, Jackson DP, Kausch AP, Lemaux PG, Medford JI, Orozco-Cárdenas ML, Tricoli DM, Van Eck J, Voytas DF, Walbot V, Wang K, Zhang ZJ, Stewart CN Jr. Advancing Crop Transformation in the Era of Genome Editing. Plant Cell. PMID: 27335450 [PubMed - in process] Free PMC Article 2016 Jul;28(7):1510-20. doi: 10.1105/tpc.16.00196. Epub 2016 Jun 22.8.538
Jung JH, Altpeter F. TALEN mediated targeted mutagenesis of the caffeic acid O-methyltransferase in highly polyploid sugarcane improves cell wall composition for production of bioethanol. Plant Mol Biol. PMID: 27306903 [PubMed - in process] Free PMC Article 2016 Sep;92(1-2):131-42. doi: 10.1007/s11103-016-0499-y. Epub 2016 Jun 15.3.905
Zale J, Jung JH, Kim JY, Pathak B, Karan R, Liu H, Chen X, Wu H, Candreva J, Zhai Z, Shanklin J, Altpeter F. Metabolic engineering of sugarcane to accumulate energy-dense triacylglycerols in vegetative biomass. Plant Biotechnol J. PMID: 26058948 [PubMed - in process] Free Article 2016 Feb;14(2):661-9. doi: 10.1111/pbi.12411. Epub 2015 Jun 8.6.09
Ptitsyn A, Temanni R, Bouchard C, Anderson PA. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome. PLoS One. PMID: 26393794 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 22;10(9):e0138006. doi: 10.1371/journal.pone.0138006. eCollection 2015.3.057
Gill RG, Pagni PP, Kupfer T, Wasserfall CH, Deng S, Posgai A, Manenkova Y, Bel Hani A, Straub L, Bernstein P, Atkinson MA, Herold KC, von Herrath M, Staeva T, Ehlers MR, Nepom GT. A Preclinical Consortium Approach for Assessing the Efficacy of Combined Anti-CD3 Plus IL-1 Blockade in Reversing New-Onset Autoimmune Diabetes in NOD Mice. Diabetes. PMID: 26718498 [PubMed - in process] 2016 May;65(5):1310-6. doi: 10.2337/db15-0492. Epub 2015 Dec 30.8.784
Campbell-Thompson ML, Schatz DA, Kaddis JS, Atkinson MA. Pancreatic duct hyperplasia/dysplasia in type 1 diabetes and pancreatic weight in individuals with and without diabetes. Reply to Kobayashi T, Aida K, Fukui T et al [letter] and Saisho Y [letter]. Diabetologia. PMID: 26861059 [PubMed - indexed for MEDLINE] 2016 Apr;59(4):870-2. doi: 10.1007/s00125-016-3889-4. Epub 2016 Feb 9. No abstract available.6.206
Liu CW, Atkinson MA, Zhang Q. Type 1 diabetes cadaveric human pancreata exhibit a unique exocrine tissue proteomic profile. Proteomics. PMID: 26935967 [PubMed - in process] 2016 May;16(9):1432-46. doi: 10.1002/pmic.201500333. Epub 2016 Apr 13.4.079
Buschard K, Bracey AW, McElroy DL, Magis AT, Osterbye T, Atkinson MA, Bailey KM, Posgai AL, Ostrov DA. Sulfatide Preserves Insulin Crystals Not by Being Integrated in the Lattice but by Stabilizing Their Surface. J Diabetes Res. PMID: 26981544 [PubMed - in process] Free PMC Article 2016;2016:6179635. doi: 10.1155/2016/6179635. Epub 2016 Feb 14.2.431
Hackeng WM, Brosens LA, Poruk KE, Noë M, Hosoda W, Poling JS, Rizzo A, Campbell-Thompson M, Atkinson MA, Konukiewitz B, Klöppel G, Heaphy CM, Meeker AK, Wood LD. Aberrant Menin expression is an early event in pancreatic neuroendocrine tumorigenesis. Hum Pathol. PMID: 27342911 [PubMed - in process] 2016 Oct;56:93-100. doi: 10.1016/j.humpath.2016.06.006. Epub 2016 Jun 21. 2.791
Campbell-Thompson M, Fu A, Kaddis JS, Wasserfall C, Schatz DA, Pugliese A, Atkinson MA. Insulitis and β-Cell Mass in the Natural History of Type 1 Diabetes. Diabetes. PMID: 26581594 [PubMed - indexed for MEDLINE] Free Article 2016 Mar;65(3):719-31. doi: 10.2337/db15-0779. Epub 2015 Nov 18.8.784
Gagliani N, Jofra T, Posgai AL, Atkinson MA, Battaglia M. Immune Depletion in Combination with Allogeneic Islets Permanently Restores Tolerance to Self-Antigens in Diabetic NOD Mice. PLoS One. PMID: 26580221 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Nov 18;10(11):e0142318. doi: 10.1371/journal.pone.0142318. eCollection 2015.3.057
Insel RA, Dunne JL, Atkinson MA, Chiang JL, Dabelea D, Gottlieb PA, Greenbaum CJ, Herold KC, Krischer JP, Lernmark Å, Ratner RE, Rewers MJ, Schatz DA, Skyler JS, Sosenko JM, Ziegler AG. Staging presymptomatic type 1 diabetes: a scientific statement of JDRF, the Endocrine Society, and the American Diabetes Association. Diabetes Care. PMID: 26404926 [PubMed - indexed for MEDLINE] 2015 Oct;38(10):1964-74. doi: 10.2337/dc15-1419. Review.8.934
Campbell-Thompson ML, Kaddis JS, Wasserfall C, Haller MJ, Pugliese A, Schatz DA, Shuster JJ, Atkinson MA. The influence of type 1 diabetes on pancreatic weight. Diabetologia. PMID: 26358584 [PubMed - in process] 2016 Jan;59(1):217-21. doi: 10.1007/s00125-015-3752-z. Epub 2015 Sep 10.6.206
Yoon YM, Lewis JS, Carstens MR, Campbell-Thompson M, Wasserfall CH, Atkinson MA, Keselowsky BG. A combination hydrogel microparticle-based vaccine prevents type 1 diabetes in non-obese diabetic mice. Sci Rep. PMID: 26279095 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug 17;5:13155. doi: 10.1038/srep13155.5.228
Li X, Atkinson MA. The role for gut permeability in the pathogenesis of type 1 diabetes--a solid or leaky concept? Pediatr Diabetes. PMID: 26269193 [PubMed - indexed for MEDLINE] 2015 Nov;16(7):485-92. doi: 10.1111/pedi.12305. Epub 2015 Aug 13. Review.3.488
Mathews CE, Xue S, Posgai A, Lightfoot YL, Li X, Lin A, Wasserfall C, Haller MJ, Schatz D, Atkinson MA. Acute Versus Progressive Onset of Diabetes in NOD Mice: Potential Implications for Therapeutic Interventions in Type 1 Diabetes. Diabetes. PMID: 26216853 [PubMed - indexed for MEDLINE] Free Article 2015 Nov;64(11):3885-90. doi: 10.2337/db15-0449. Epub 2015 Jul 27.8.784
Xue S, Posgai A, Wasserfall C, Myhr C, Campbell-Thompson M, Mathews CE, Brusko T, Rabinovitch A, Savinov A, Battaglia M, Schatz D, Haller M, Atkinson MA. Combination Therapy Reverses Hyperglycemia in NOD Mice With Established Type 1 Diabetes. Diabetes. PMID: 26185279 [PubMed - indexed for MEDLINE] Free Article 2015 Nov;64(11):3873-84. doi: 10.2337/db15-0164. Epub 2015 Jul 16.8.784
Kaddis JS, Pugliese A, Atkinson MA. A run on the biobank: what have we learned about type 1 diabetes from the nPOD tissue repository? Curr Opin Endocrinol Diabetes Obes. PMID: 26087339 [PubMed - indexed for MEDLINE] 2015 Aug;22(4):290-5. doi: 10.1097/MED.0000000000000171. Review.3.119
Fuhrman CA, Yeh WI, Seay HR, Saikumar Lakshmi P, Chopra G, Zhang L, Perry DJ, McClymont SA, Yadav M, Lopez MC, Baker HV, Zhang Y, Li Y, Whitley M, von Schack D, Atkinson MA, Bluestone JA, Brusko TM. Divergent Phenotypes of Human Regulatory T Cells Expressing the Receptors TIGIT and CD226. J Immunol. PMID: 25994968 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Jul 1;195(1):145-55. doi: 10.4049/jimmunol.1402381. Epub 2015 May 20.4.985
Lewis JS, Dolgova NV, Zhang Y, Xia CQ, Wasserfall CH, Atkinson MA, Clare-Salzler MJ, Keselowsky BG. A combination dual-sized microparticle system modulates dendritic cells and prevents type 1 diabetes in prediabetic NOD mice. Clin Immunol. PMID: 25842187 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep;160(1):90-102. doi: 10.1016/j.clim.2015.03.023. Epub 2015 Apr 2.4.034
Stewart KA, Austin JD, Zamudio KR, Lougheed SC. Contact zone dynamics during early stages of speciation in a chorus frog (Pseudacris crucifer). Heredity (Edinb). PMID: 26626576 [PubMed - indexed for MEDLINE] 2016 Feb;116(2):239-47. doi: 10.1038/hdy.2015.96. Epub 2015 Dec 2. 3.801
Fletcher RJ Jr, Robertson EP, Wilcox RC, Reichert BE, Austin JD, Kitchens WM. Affinity for natal environments by dispersers impacts reproduction and explains geographical structure of a highly mobile bird. Proc Biol Sci. PMID: 26336178 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 7;282(1814). pii: 20151545. doi: 10.1098/rspb.2015.1545.4.823
Uddin MN, Sultana DA, Lorentsen KJ, Cho JJ, Kirst ME, Brantly ML, Califano D, Sant'Angelo DB, Avram D. Transcription factor Bcl11b sustains iNKT1 and iNKT2 cell programs, restricts iNKT17 cell program, and governs iNKT cell survival. Proc Natl Acad Sci U S A. PMID: 27330109 [PubMed - in process] 2016 Jul 5;113(27):7608-13. doi: 10.1073/pnas.1521846113. Epub 2016 Jun 21. 9.423
Bucur O, Almasan A, Zubarev R, Friedman M, Nicolson GL, Sumazin P, Leabu M, Nikolajczyk BS, Avram D, Kunej T, Calin GA, Godwin AK, Adami HO, Zaphiropoulos PG, Richardson DR, Schmitt-Ulms G, Westerblad H, Keniry M, Grau GE, Carbonetto S, Stan RV, Popa-Wagner A, Takhar K, Baron BW, Galardy PJ, Yang F, Data D, Fadare O, Yeo KJ, Gabreanu GR, Andrei S, Soare GR, Nelson MA, Liehn EA. An updated h-index measures both the primary and total scientific output of a researcher. Discoveries (Craiova). PMID: 26504901 [PubMed] Free PMC Article 2015 Jul-Sep;3(3). pii: e50. Epub 2015 Sep 30.N/A
Califano D, Cho JJ, Uddin MN, Lorentsen KJ, Yang Q, Bhandoola A, Li H, Avram D. Transcription Factor Bcl11b Controls Identity and Function of Mature Type 2 Innate Lymphoid Cells. Immunity. PMID: 26231117 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug 18;43(2):354-68. doi: 10.1016/j.immuni.2015.07.005. Epub 2015 Jul 28.24.082
Farhadifar R, Ponciano JM, Andersen EC, Needleman DJ, Baer CF. Mutation Is a Sufficient and Robust Predictor of Genetic Variation for Mitotic Spindle Traits in Caenorhabditis elegans. Genetics. PMID: 27334268 [PubMed - in process] 2016 Aug;203(4):1859-70. doi: 10.1534/genetics.115.185736. Epub 2016 Jun 22. 4.644
Andrew JR, Dossey MM, Garza VO, Keller-Pearson M, Baer CF, Joyner-Matos J. Abiotic stress does not magnify the deleterious effects of spontaneous mutations. Heredity (Edinb). PMID: 26103946 [PubMed - indexed for MEDLINE] 2015 Dec;115(6):503-8. doi: 10.1038/hdy.2015.51. Epub 2015 Jun 24.3.801
Bailey LB, Stover PJ, McNulty H, Fenech MF, Gregory JF 3rd, Mills JL, Pfeiffer CM, Fazili Z, Zhang M, Ueland PM, Molloy AM, Caudill MA, Shane B, Berry RJ, Bailey RL, Hausman DB, Raghavan R, Raiten DJ. Biomarkers of Nutrition for Development-Folate Review. J Nutr. PMID: 26451605 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Jul;145(7):1636S-1680S. doi: 10.3945/jn.114.206599. Epub 2015 Jun 3. Review.3.74
Cheng TY, Makar KW, Neuhouser ML, Miller JW, Song X, Brown EC, Beresford SA, Zheng Y, Poole EM, Galbraith RL, Duggan DJ, Habermann N, Bailey LB, Maneval DR, Caudill MA, Toriola AT, Green R, Ulrich CM. Folate-mediated one-carbon metabolism genes and interactions with nutritional factors on colorectal cancer risk: Women's Health Initiative Observational Study. Cancer. PMID: 26108676 [PubMed - indexed for MEDLINE] 2015 Oct 15;121(20):3684-91. doi: 10.1002/cncr.29465. Epub 2015 Jun 24.5.649
Nacionales DC, Szpila B, Ungaro R, Lopez MC, Zhang J, Gentile LF, Cuenca AL, Vanzant E, Mathias B, Jyot J, Westerveld D, Bihorac A, Joseph A, Mohr A, Duckworth LV, Moore FA, Baker HV, Leeuwenburgh C, Moldawer LL, Brakenridge S, Efron PA. A Detailed Characterization of the Dysfunctional Immunity and Abnormal Myelopoiesis Induced by Severe Shock and Trauma in the Aged. J Immunol. PMID: 26246141 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 1;195(5):2396-407. doi: 10.4049/jimmunol.1500984. Epub 2015 Aug 5.4.985
Mira JC, Szpila BE, Nacionales DC, Lopez MC, Gentile LF, Mathias BJ, Vanzant EL, Ungaro R, Holden D, Rosenthal MD, Rincon J, Verdugo PT, Larson SD, Moore FA, Brakenridge SC, Mohr AM, Baker HV, Moldawer LL, Efron PA. Patterns of gene expression among murine models of hemorrhagic shock/trauma and sepsis. Physiol Genomics. PMID: 26578697 [PubMed - in process] 2016 Feb;48(2):135-44. doi: 10.1152/physiolgenomics.00072.2015. Epub 2015 Nov 17.2.615
Brant JO, Lopez MC, Baker HV, Barbazuk WB, Maden M. A Comparative Analysis of Gene Expression Profiles during Skin Regeneration in Mus and Acomys. PLoS One. PMID: 26606282 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Nov 25;10(11):e0142931. doi: 10.1371/journal.pone.0142931. eCollection 2015.3.057
Wynn JL, Wilson CS, Hawiger J, Scumpia PO, Marshall AF, Liu JH, Zharkikh I, Wong HR, Lahni P, Benjamin JT, Plosa EJ, Weitkamp JH, Sherwood ER, Moldawer LL, Ungaro R, Baker HV, Lopez MC, McElroy SJ, Colliou N, Mohamadzadeh M, Moore DJ. Targeting IL-17A attenuates neonatal sepsis mortality induced by IL-18. Proc Natl Acad Sci U S A. PMID: 27114524 [PubMed - in process] 2016 May 10;113(19):E2627-35. doi: 10.1073/pnas.1515793113. Epub 2016 Apr 25.9.423
Armfield BA, Seifert AW, Zheng Z, Merton EM, Rock JR, Lopez MC, Baker HV, Cohn MJ. Molecular Characterization of the Genital Organizer: Gene Expression Profile of the Mouse Urethral Plate Epithelium. J Urol. PMID: 27173853 [PubMed - in process] 2016 Oct;196(4):1295-302. doi: 10.1016/j.juro.2016.04.091. Epub 2016 May 9.4.7
Chen S, Fisher RC, Signs S, Molina LA, Shenoy AK, Lopez MC, Baker HV, Koomen JM, Chen Y, Gittleman H, Barnholtz-Sloan J, Berg A, Appelman HD, Huang EH. Inhibition of PI3K/Akt/mTOR signaling in PI3KR2-overexpressing colon cancer stem cells reduces tumor growth due to apoptosis. Oncotarget. PMID: 27286264 [PubMed - as supplied by publisher] Free Article 2016 Jun 8. doi: 10.18632/oncotarget.9919. [Epub ahead of print]5.008
Weitkamp JH, Guthrie SO, Wong HR, Moldawer LL, Baker HV, Wynn JL. Histological chorioamnionitis shapes the neonatal transcriptomic immune response. Early Hum Dev. PMID: 27318328 [PubMed - in process] 2016 Jul;98:1-6. doi: 10.1016/j.earlhumdev.2016.06.001. Epub 2016 Jun 16.1.913
Brant JO, Yoon JH, Polvadore T, Barbazuk WB, Maden M. Cellular events during scar-free skin regeneration in the spiny mouse, Acomys. Wound Repair Regen. PMID: 26606280 [PubMed - in process] 2016 Jan-Feb;24(1):75-88. doi: 10.1111/wrr.12385. Epub 2016 Jan 19.2.628
Sayler KA, Loftis AD, Beatty SK, Boyce CL, Garrison E, Clemons B, Cunningham M, Alleman AR, Barbet AF. Prevalence of Tick-Borne Pathogens in Host-Seeking Amblyomma americanum (Acari: Ixodidae) and Odocoileus virginianus (Artiodactyla: Cervidae) in Florida. J Med Entomol. PMID: 27117680 [PubMed - as supplied by publisher] 2016 Apr 26. pii: tjw054. [Epub ahead of print]1.712
Brown WC, Barbet AF. Persistent Infections and Immunity in Ruminants to Arthropod-Borne Bacteria in the Family Anaplasmataceae. Annu Rev Anim Biosci. PMID: 26734888 [PubMed - in process] 2016;4:177-97. doi: 10.1146/annurev-animal-022513-114206. Epub 2015 Dec 23.4.348
Siboni RB, Nakamori M, Wagner SD, Struck AJ, Coonrod LA, Harriott SA, Cass DM, Tanner MK, Berglund JA. Actinomycin D Specifically Reduces Expanded CUG Repeat RNA in Myotonic Dystrophy Models. Cell Rep. PMID: 26686629 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Dec 22;13(11):2386-94. doi: 10.1016/j.celrep.2015.11.028. Epub 2015 Dec 10.7.87
Berns KI, Byrne BJ, Flotte TR, Gao G, Hauswirth WW, Herzog RW, Muzyczka N, VandenDriessche T, Xiao X, Zolotukhin S, Srivastava A. Adeno-Associated Virus Type 2 and Hepatocellular Carcinoma? Hum Gene Ther. PMID: 26690810 [PubMed - indexed for MEDLINE] 2015 Dec;26(12):779-81. doi: 10.1089/hum.2015.29014.kib. No abstract available.4.062
Clavijo Michelangeli JA, Sinclair TR, Bliznyuk N. Using an Arrhenius-type function to describe temperature response of plant developmental processes: inference and cautions. New Phytol. PMID: 26805746 [PubMed - indexed for MEDLINE] 2016 Apr;210(2):377-9. doi: 10.1111/nph.13812. Epub 2016 Jan 25. No abstract available.7.21
Bloom DC. Alphaherpesvirus Latency: A Dynamic State of Transcription and Reactivation. Adv Virus Res. PMID: 26997590 [PubMed - in process] 2016;94:53-80. doi: 10.1016/bs.aivir.2015.10.001. Epub 2016 Feb 15.N/A
Bergua M, Phelan DM, Bak A, Bloom DC, Folimonova SY. Simultaneous visualization of two Citrus tristeza virus genotypes provides new insights into the structure of multi-component virus populations in a host. Virology. PMID: 26874013 [PubMed - indexed for MEDLINE] 2016 Apr;491:10-9. doi: 10.1016/j.virol.2016.01.017. Epub 2016 Feb 9.3.2
Bloom DC, Feller J, McAnany P, Vilaboa N, Voellmy R. Replication-Competent Controlled Herpes Simplex Virus. J Virol. PMID: 26269179 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct;89(20):10668-79. doi: 10.1128/JVI.01667-15. Epub 2015 Aug 12.4.606
Origgi FC, Tecilla M, Pilo P, Aloisio F, Otten P, Aguilar-Bultet L, Sattler U, Roccabianca P, Romero CH, Bloom DC, Jacobson ER. A Genomic Approach to Unravel Host-Pathogen Interaction in Chelonians: The Example of Testudinid Herpesvirus 3. PLoS One. PMID: 26244892 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug 5;10(8):e0134897. doi: 10.1371/journal.pone.0134897. eCollection 2015.3.057
McClain L, Zhi Y, Cheng H, Ghosh A, Piazza P, Yee MB, Kumar S, Milosevic J, Bloom DC, Arav-Boger R, Kinchington PR, Yolken R, Nimgaonkar V, D'Aiuto L. Broad-spectrum non-nucleoside inhibitors of human herpesviruses. Antiviral Res. PMID: 26079681 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep;121:16-23. doi: 10.1016/j.antiviral.2015.06.005. Epub 2015 Jun 12.4.909
Tondnevis F, Weiss TM, Matsui T, Bloom LB, McKenna R. Solution structure of an "open" E. coli Pol III clamp loader sliding clamp complex. J Struct Biol. PMID: 26968362 [PubMed - in process] 2016 Jun;194(3):272-81. doi: 10.1016/j.jsb.2016.03.003. Epub 2016 Mar 8. 2.57
Tondnevis F, Gillilan RE, Bloom LB, McKenna R. Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer. Struct Dyn. PMID: 26798827 [PubMed] Free PMC Article 2015 Aug 18;2(5):054701. doi: 10.1063/1.4927407. eCollection 2015 Sep.3.667
Chen MJ, Lu Y, Simpson NE, Beveridge MJ, Elshikha AS, Akbar MA, Tsai HY, Hinske S, Qin J, Grunwitz CR, Chen T, Brantly ML, Song S. In Situ Transplantation of Alginate Bioencapsulated Adipose Tissues Derived Stem Cells (ADSCs) via Hepatic Injection in a Mouse Model. PLoS One. PMID: 26372641 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 15;10(9):e0138184. doi: 10.1371/journal.pone.0138184. eCollection 2015.3.057
Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science. PMID: 26404820 [PubMed - indexed for MEDLINE] 2015 Sep 25;349(6255):1460. doi: 10.1126/science.aab1578.34.661
Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL. Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods. Syst Biol. PMID: 26865273 [PubMed - in process] 2016 Jul;65(4):612-27. doi: 10.1093/sysbio/syw014. Epub 2016 Feb 10.8.225
Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences. Mol Phylogenet Evol. PMID: 26879712 [PubMed - in process] 2016 May;98:123-32. doi: 10.1016/j.ympev.2016.02.003. Epub 2016 Feb 12.3.792
Ascunce MS, Huguet-Tapia JC, Braun EL, Ortiz-Urquiza A, Keyhani NO, Goss EM. Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA. Genom Data. PMID: 26981361 [PubMed] Free PMC Article 2015 Nov 23;7:60-1. doi: 10.1016/j.gdata.2015.11.019. eCollection 2016 Mar.0.52
Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol. PMID: 27238284 [PubMed - in process] 2016 Jun 20;26(12):1577-84. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.8.983
Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes). Mol Biol Evol. PMID: 26715628 2016 Apr;33(4):1110-25. doi: 10.1093/molbev/msv347.13.649
Hosner PA, Braun EL, Kimball RT. Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Mol Phylogenet Evol. PMID: 27369454 [PubMed - in process] 2016 Sep;102:320-30. doi: 10.1016/j.ympev.2016.06.006. Epub 2016 Jun 28.3.792
Oden S, Brocchieri L. Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenans. Bioinformatics. PMID: 26048600 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct 15;31(20):3254-61. doi: 10.1093/bioinformatics/btv339. Epub 2015 Jun 4. 5.766
Holl HM, Gao S, Fei Z, Andrews C, Brooks SA. Generation of a de novo transcriptome from equine lamellar tissue. BMC Genomics. PMID: 26432030 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct 3;16:739. doi: 10.1186/s12864-015-1948-8.3.867
Jacobs LN, Staiger EA, Albright JD, Brooks SA. The MC1R and ASIP Coat Color Loci May Impact Behavior in the Horse. J Hered. PMID: 26884605 [PubMed - indexed for MEDLINE] 2016 May;107(3):214-9. doi: 10.1093/jhered/esw007. Epub 2016 Feb 16. Erratum in: J Hered. 2016 Sep;107(5):479.2.075
Staiger EA, Al Abri MA, Pflug KM, Kalla SE, Ainsworth DM, Miller D, Raudsepp T, Sutter NB, Brooks SA. Skeletal variation in Tennessee Walking Horses maps to the LCORL/NCAPG gene region. Physiol Genomics. PMID: 26931356 [PubMed - in process] 2016 May;48(5):325-35. doi: 10.1152/physiolgenomics.00100.2015. Epub 2016 Mar 1.2.615
Staiger EA, Albright JD, Brooks SA. Genome-wide association mapping of heritable temperament variation in the Tennessee Walking Horse. Genes Brain Behav. PMID: 26991152 [PubMed - in process] 2016 Jun;15(5):514-26. doi: 10.1111/gbb.12290. Epub 2016 May 5.3.275
Staiger EA, Tseng CT, Miller D, Cassano JM, Nasir L, Garrick D, Brooks SA, Antczak DF. Host genetic influence on papillomavirus-induced tumors in the horse. Int J Cancer. PMID: 27037728 [PubMed - in process] 2016 Aug 15;139(4):784-92. doi: 10.1002/ijc.30120. Epub 2016 May 6.5.531
Michaels DL, Leibowitz JA, Azaiza MT, Shil PK, Shama SM, Kutish GF, Distelhorst SL, Balish MF, May MA, Brown DR. Cellular Microbiology of Mycoplasma canis. Infect Immun. PMID: 27045036 [PubMed - in process] 2016 May 24;84(6):1785-95. doi: 10.1128/IAI.01440-15. Print 2016 Jun.3.603
Boundy-Mills K, Hess M, Bennett AR, Ryan M, Kang S, Nobles D, Eisen JA, Inderbitzin P, Sitepu IR, Torok T, Brown DR, Cho J, Wertz JE, Mukherjee S, Cady SL, McCluskey K. The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections. Appl Environ Microbiol. PMID: 26092453 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 1;81(17):5671-4. doi: 10.1128/AEM.01176-15. Epub 2015 Jun 19. Review.3.823
Williams AE, Choi K, Chan AL, Lee YJ, Reeves WH, Bubb MR, Stewart CM, Cha S. Sjögren's syndrome-associated microRNAs in CD14(+) monocytes unveils targeted TGFβ signaling. Arthritis Res Ther. PMID: 27142093 [PubMed - in process] Free PMC Article 2016 May 3;18(1):95. doi: 10.1186/s13075-016-0987-0.3.979
Bubb MR. Risk of Disseminated Varicella Zoster in Immunosuppressed Patients Receiving Zoster Vaccination. Mayo Clin Proc. PMID: 26541254 [PubMed - indexed for MEDLINE] 2015 Nov;90(11):1585-6. doi: 10.1016/j.mayocp.2015.09.001. No abstract available.5.92
Hossain MA, Barrow JJ, Shen Y, Haq MI, Bungert J. Artificial zinc finger DNA binding domains: versatile tools for genome engineering and modulation of gene expression. J Cell Biochem. PMID: 25989233 [PubMed - indexed for MEDLINE] 2015 Nov;116(11):2435-44. doi: 10.1002/jcb.25226. Review. 8.717
Stees JR, Hossain MA, Sunose T, Kudo Y, Pardo CE, Nabilsi NH, Darst RP, Poudyal R, Igarashi K, Huang S, Kladde MP, Bungert J. High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation. Mol Cell Biol. PMID: 26503787 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct 26;36(2):238-50. doi: 10.1128/MCB.00723-15.4.427
Deng C, Li Y, Zhou L, Cho J, Patel B, Terada N, Li Y, Bungert J, Qiu Y, Huang S. HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development. Cell Rep. PMID: 26725110 [PubMed - indexed for MEDLINE] Free PMC Article 2016 Jan 5;14(1):103-14. doi: 10.1016/j.celrep.2015.12.007. Epub 2015 Dec 24. 7.87
Li Y, Schulz VP, Deng C, Li G, Shen Y, Tusi BK, Ma G, Stees J, Qiu Y, Steiner LA, Zhou L, Zhao K, Bungert J, Gallagher PG, Huang S. Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation. Nucleic Acids Res. PMID: 27141965 [PubMed - in process] Free PMC Article 2016 Sep 6;44(15):7173-88. doi: 10.1093/nar/gkw327. Epub 2016 May 3.9.202
Tiley GP, Burleigh JG. The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evol Biol. PMID: 26377000 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep 16;15:194. doi: 10.1186/s12862-015-0473-3. Erratum in: BMC Evol Biol. 2015;15:244. Burleigh, Gordon [corrected to Burleigh, J Gordon].3.406
Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD 4th, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proc Natl Acad Sci U S A. PMID: 26385966 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct 13;112(41):12764-9. doi: 10.1073/pnas.1423041112. Epub 2015 Sep 18. 9.423
Tiley GP, Burleigh JG. Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evol Biol. PMID: 26553259 [PubMed] Free PMC Article 2015 Nov 9;15:244. doi: 10.1186/s12862-015-0525-8. No abstract available.3.406
Zenil-Ferguson R, Ponciano JM, Burleigh JG. Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms. Am J Bot.PMID: 27206462 [PubMed - in process] 2016 Jul;103(7):1175-86. doi: 10.3732/ajb.1500408. Epub 2016 May 10.2.811
Allen JM, Burleigh JG, Light JE, Reed DL. Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice. PeerJ. PMID: 27547523 [PubMed] Free PMC Article 2016 Jul 19;4:e2187. doi: 10.7717/peerj.2187. eCollection 2016.2.183
Rocca DG, Willenberg BJ, Qi Y, Simmons CS, Rubiano A, Ferreira LF, Huo T, Petersen JW, Ruchaya PJ, Wate PS, Wise EA, Handberg EM, Cogle CR, Batich CD, Byrne BJ, Pepine CJ. An injectable capillary-like microstructured alginate hydrogel improves left ventricular function after myocardial infarction in rats. Int J Cardiol. PMID: 27379917 [PubMed - in process] 2016 Oct 1;220:149-54. doi: 10.1016/j.ijcard.2016.06.158. Epub 2016 Jun 25.4.638
ElMallah MK, Pagliardini S, Turner SM, Cerreta AJ, Falk DJ, Byrne BJ, Greer JJ, Fuller DD. Stimulation of Respiratory Motor Output and Ventilation in a Murine Model of Pompe Disease by Ampakines. Am J Respir Cell Mol Biol. PMID: 25569118 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep;53(3):326-35. doi: 10.1165/rcmb.2014-0374OC.4.082
Soustek MS, Baligand C, Falk DJ, Walter GA, Lewin AS, Byrne BJ. Endurance training ameliorates complex 3 deficiency in a mouse model of Barth syndrome. J Inherit Metab Dis. PMID: 25860817 [PubMed - indexed for MEDLINE] 2015 Sep;38(5):915-22. doi: 10.1007/s10545-015-9834-8. Epub 2015 Apr 10.3.541
Todd AG, McElroy JA, Grange RW, Fuller DD, Walter GA, Byrne BJ, Falk DJ. Correcting Neuromuscular Deficits With Gene Therapy in Pompe Disease. Ann Neurol. PMID: 25925726 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug;78(2):222-34. doi: 10.1002/ana.24433. Epub 2015 Jun 30.9.638
Su J, Sherman A, Doerfler PA, Byrne BJ, Herzog RW, Daniell H. Oral delivery of Acid Alpha Glucosidase epitopes expressed in plant chloroplasts suppresses antibody formation in treatment of Pompe mice. Plant Biotechnol J. PMID: 26053072 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct;13(8):1023-32. doi: 10.1111/pbi.12413. Epub 2015 Jun 5.6.09
Lee NC, Muramatsu S, Chien YH, Liu WS, Wang WH, Cheng CH, Hu MK, Chen PW, Tzen KY, Byrne BJ, Hwu WL. Benefits of Neuronal Preferential Systemic Gene Therapy for Neurotransmitter Deficiency. Mol Ther. PMID: 26137853 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Oct;23(10):1572-81. doi: 10.1038/mt.2015.122. Epub 2015 Jul 3.6.938
Smith BK, Renno MS, Green MM, Sexton TM, Lawson LA, Martin AD, Corti M, Byrne BJ. Respiratory motor function in individuals with centronuclear myopathies. Muscle Nerve. PMID: 26351754 [PubMed - indexed for MEDLINE] 2016 Feb;53(2):214-21. doi: 10.1002/mus.24899. Epub 2015 Dec 29. Erratum in: Muscle Nerve. 2016 Jun;53(6):1000.2.713
Corti M, Cleaver B, Clément N, Conlon TJ, Faris KJ, Wang G, Benson J, Tarantal AF, Fuller D, Herzog RW, Byrne BJ. Evaluation of Readministration of a Recombinant Adeno-Associated Virus Vector Expressing Acid Alpha-Glucosidase in Pompe Disease: Preclinical to Clinical Planning. Hum Gene Ther Clin Dev. PMID: 26390092 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Sep;26(3):185-93. doi: 10.1089/humc.2015.068.2.889
Smith BK, Renno MS, Martin AD, Corti M, Byrne BJ. Reply: Respiratory motor function in centronuclear myopathy. Muscle Nerve. PMID: 26561983 [PubMed - indexed for MEDLINE] 2016 Apr;53(4):660-1. doi: 10.1002/mus.24961. Epub 2015 Dec 29. No abstract available. Erratum in: Muscle Nerve. 2016 Jun;53(6):1001.2.713
Doerfler PA, Todd AG, Clément N, Falk DJ, Nayak S, Herzog RW, Byrne BJ. Copackaged AAV9 Vectors Promote Simultaneous Immune Tolerance and Phenotypic Correction of Pompe Disease. Hum Gene Ther. PMID: 26603344 [PubMed - indexed for MEDLINE] 2016 Jan;27(1):43-59. doi: 10.1089/hum.2015.103.4.062
Smith BK, Corti M, Martin AD, Fuller DD, Byrne BJ. Altered activation of the diaphragm in late-onset Pompe disease. Respir Physiol Neurobiol. PMID: 26612101 [PubMed - indexed for MEDLINE] 2016 Feb 1;222:11-5. doi: 10.1016/j.resp.2015.11.013.1.773
Doerfler PA, Nayak S, Corti M, Morel L, Herzog RW, Byrne BJ. Targeted approaches to induce immune tolerance for Pompe disease therapy. Mol Ther Methods Clin Dev. PMID: 26858964 [PubMed] Free PMC Article 2016 Jan 27;3:15053. doi: 10.1038/mtm.2015.53. eCollection 2016. Review.N/A
Willcocks RJ, Rooney WD, Triplett WT, Forbes SC, Lott DJ, Senesac CR, Daniels MJ, Wang DJ, Harrington AT, Tennekoon GI, Russman BS, Finanger EL, Byrne BJ, Finkel RS, Walter GA, Sweeney HL, Vandenborne K. Multicenter prospective longitudinal study of magnetic resonance biomarkers in a large duchenne muscular dystrophy cohort. Ann Neurol. PMID: 26891991 [PubMed - indexed for MEDLINE] 2016 Apr;79(4):535-47. doi: 10.1002/ana.24599. Epub 2016 Feb 19.9.638
Smith BK, Fuller DD, Martin AD, Lottenberg L, Islam S, Lawson LA, Onders RP, Byrne BJ. Diaphragm Pacing as a Rehabilitative Tool for Patients With Pompe Disease Who Are Ventilator-Dependent: Case Series. Phys Ther. PMID: 26893511 [PubMed - in process] 2016 May;96(5):696-703. doi: 10.2522/ptj.20150122. Epub 2016 Feb 18.2.799
Turner SM, Hoyt AK, ElMallah MK, Falk DJ, Byrne BJ, Fuller DD. Neuropathology in respiratory-related motoneurons in young Pompe (Gaa(-/-)) mice. Respir Physiol Neurobiol. PMID: 26921786 [PubMed - in process] Free PMC Article 2016 Jun 15;227:48-55. doi: 10.1016/j.resp.2016.02.007. Epub 2016 Feb 26.1.773
Adamson-Small L, Potter M, Falk DJ, Cleaver B, Byrne BJ, Clément N. A scalable method for the production of high-titer and high-quality adeno-associated type 9 vectors using the HSV platform. Mol Ther Methods Clin Dev. PMID: 27222839 [PubMed] Free PMC Article 2016 May 11;3:16031. doi: 10.1038/mtm.2016.31. eCollection 2016.N/A
Cade WT, Reeds DN, Peterson LR, Bohnert KL, Tinius RA, Benni PB, Byrne BJ, Taylor CL. Endurance Exercise Training in Young Adults with Barth Syndrome: A Pilot Study. JIMD Rep. PMID: 27295193 [PubMed - as supplied by publisher] 2016 Jun 11. [Epub ahead of print]3.541
Welch AK, Jeanette Lynch I, Gumz ML, Cain BD, Wingo CS. Aldosterone alters the chromatin structure of the murine endothelin-1 gene. Life Sci. PMID: 26775567 [PubMed - in process] 2016 Aug 15;159:121-6. doi: 10.1016/j.lfs.2016.01.019. Epub 2016 Jan 14.2.685
Lynch IJ, Welch AK, Gumz ML, Kohan DE, Cain BD, Wingo CS. Effect of mineralocorticoid treatment in mice with collecting duct-specific knockout of endothelin-1. Am J Physiol Renal Physiol. PMID: 26400543 [PubMed - indexed for MEDLINE] 2015 Dec 15;309(12):F1026-34. doi: 10.1152/ajprenal.00220.2015. Epub 2015 Sep 23.3.39
Glushakov AV, Glushakova OY, Doré S, Carney PR, Hayes RL. Animal Models of Posttraumatic Seizures and Epilepsy. Methods Mol Biol. PMID: 27604735 [PubMed - in process] 2016;1462:481-519. doi: 10.1007/978-1-4939-3816-2_27.1.17
Colon-Perez LM, King M, Parekh M, Boutzoukas A, Carmona E, Couret M, Klassen R, Mareci TH, Carney PR. High-field magnetic resonance imaging of the human temporal lobe. Neuroimage Clin. PMID: 26413472 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug 1;9:58-68. doi: 10.1016/j.nicl.2015.07.005. eCollection 2015.3.857
Colon-Perez LM, Spindler C, Goicochea S, Triplett W, Parekh M, Montie E, Carney PR, Price C, Mareci TH. Dimensionless, Scale Invariant, Edge Weight Metric for the Study of Complex Structural Networks. PLoS One. PMID: 26173147 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Jul 14;10(7):e0131493. doi: 10.1371/journal.pone.0131493. eCollection 2015.3.057
Tang J, Xi L, Zhou J, Huang H, Zhang T, Carney PR, Jiang H. Noninvasive high-speed photoacoustic tomography of cerebral hemodynamics in awake-moving rats. J Cereb Blood Flow Metab. PMID: 26082016 [PubMed - indexed for MEDLINE] Free PMC Article 2015 Aug;35(8):1224-32. doi: 10.1038/jcbfm.2015.138. Epub 2015 Jun 17.4.929
Daneshjou R, Cavallari LH, Weeke PE, Karczewski KJ, Drozda K, Perera MA, Johnson JA, Klein TE, Bustamante CD, Roden DM, Shaffer C, Denny JC, Zehnder JL, Altman RB. Population-specific single-nucleotide polymorphism confers increased risk of venous thromboembolism in African Americans. Mol Genet Genomic Med. PMID: 27652279 [PubMed] Free PMC Article 2016 Jun 21;4(5):513-20. doi: 10.1002/mgg3.226. eCollection 2016 Sep.N/A
Arwood MJ, Chumnumwat S, Cavallari LH, Nutescu EA, Duarte JD. Implementing Pharmacogenomics at Your Institution: Establishment and Overcoming Implementation Challenges. Clin Transl Sci. PMID: 27214750 [PubMed - as supplied by publisher] 2016 May 23. doi: 10.1111/cts.12404. [Epub ahead of print]1.052
Cavallari LH, Mason DL. Cardiovascular Pharmacogenomics--Implications for Patients With CKD. Adv Chronic Kidney Dis. PMID: 26979147 [PubMed - in process] 2016 Mar;23(2):82-90. doi: 10.1053/j.ackd.2015.12.001. Review.2.703
Hernandez W, Gamazon ER, Smithberger E, O'Brien TJ, Harralson AF, Tuck M, Barbour A, Kittles RA, Cavallari LH, Perera MA. Novel genetic predictors of venous thromboembolism risk in African Americans. Blood. PMID: 26888256 [PubMed - indexed for MEDLINE] Free PMC Article 2016 Apr 14;127(15):1923-9. doi: 10.1182/blood-2015-09-668525. Epub 2016 Feb 17.11.847
Weitzel KW, Alexander M, Bernhardt BA, Calman N, Carey DJ, Cavallari LH, Field JR, Hauser D, Junkins HA, Levin PA, Levy K, Madden EB, Manolio TA, Odgis J, Orlando LA, Pyeritz R, Wu RR, Shuldiner AR, Bottinger EP, Denny JC, Dexter PR, Flockhart DA, Horowitz CR, Johnson JA, Kimmel SE, Levy MA, Pollin TI, Ginsburg GS; IGNITE Network. The IGNITE network: a model for genomic medicine implementation and research. BMC Med Genomics. PMID: 26729011 [PubMed - indexed for MEDLINE] Free PMC Article 2016 Jan 5;9:1. doi: 10.1186/s12920-015-0162-5.2.726
Crowl AA, Mavrodiev E, Mansion G, Haberle R, Pistarino A, Kamari G, Phitos D, Borsch T, Cellinese N. Phylogeny of Campanuloideae (Campanulaceae) with emphasis on the utility of nuclear pentatricopeptide repeat (PPR) genes. PLoS One. PMID: 24718519 [PubMed - indexed for MEDLINE] Free PMC Article 2014 Apr 9;9(4):e94199. doi: 10.1371/journal.pone.0094199. eCollection 2014. 3.057
Crowl AA, Miles NW, Visger CJ, Hansen K, Ayers T, Haberle R, Cellinese N. A global perspective on Campanulaceae: Biogeographic, genomic, and floral evolution. Am J Bot. PMID: 26865121 [PubMed - indexed for MEDLINE] 2016 Feb;103(2):233-45. doi: 10.3732/ajb.1500450. Epub 2016 Feb 10.2.811
Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, Xi Z, Rushworth CA, Gitzendanner MA, Sytsma KJ, Qiu YL, Hilu KW, Davis CC, Sanderson MJ, Beaman RS, Olmstead RG, Judd WS, Donoghue MJ, Soltis PS. Angiosperm phylogeny: 17 genes, 640 taxa. Am J Bot. PMID: 21613169 [PubMed - indexed for MEDLINE] Free Article 2011 Apr;98(4):704-30. doi: 10.3732/ajb.1000404. Epub 2011 Apr 8.2.811
Beaman RS, Cellinese N. Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity science. Zookeys. PMID: 22859875 [PubMed] Free PMC Article 2012;(209):7-17. doi: 10.3897/zookeys.209.3313. Epub 2012 Jul 20.0.938
Beaman RS, Traub GH, Dell CA, Santiago N, Koh J, Cellinese N. TOLKIN--Tree of Life Knowledge and Information Network: filling a gap for collaborative research in biological systematics. PLoS One. PMID: 22724002 [PubMed - indexed for MEDLINE] Free PMC Article 2012;7(6):e39352. doi: 10.1371/journal.pone.0039352. Epub 2012 Jun 18.3.057
Guralnick R, Conlin T, Deck J, Stucky BJ, Cellinese N. The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices. PLoS One. PMID: 25470125 [PubMed - indexed for MEDLINE] Free PMC Article 2014 Dec 3;9(12):e114069. doi: 10.1371/journal.pone.0114069. eCollection 2014.3.057
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Cellinese N, Baum DA, Mishler BD. Species and phylogenetic nomenclature. Syst Biol. PMID: 22382300 [PubMed - indexed for MEDLINE] 2012 Oct;61(5):885-91. doi: 10.1093/sysbio/sys035. Epub 2012 Feb 29. No abstract available.8.225
Ayed AO, Chang LJ, Moreb JS. Immunotherapy for multiple myeloma: Current status and future directions. Crit Rev Oncol Hematol. PMID: 26153389 2015 Dec;96(3):399-412. doi: 10.1016/j.critrevonc.2015.06.006. Review. 5.039
Meng X, Zhao Q, Jin Y, Yu J, Yin Z, Chen S, Dai S. Chilling-responsive mechanisms in halophyte Puccinellia tenuiflora seedlings revealed from proteomics analysis. J Proteomics. PMID: 27130536 [PubMed - in process] 2016 Jun 30;143:365-81. doi: 10.1016/j.jprot.2016.04.038. Epub 2016 Apr 27.3.867
Yu J, Zhang J, Zhao Q, Liu Y, Chen S, Guo H, Shi L, Dai S. Proteomic Analysis Reveals the Leaf Color Regulation Mechanism in Chimera Hosta "Gold Standard" Leaves. Int J Mol Sci. PMID: 27005614 [PubMed - in process] Free PMC Article 2016 Mar 8;17(3):346. doi: 10.3390/ijms17030346.3.257
Soltis DE, Misra BB, Shan S, Chen S, Soltis PS. Polyploidy and the proteome. Biochim Biophys Acta. PMID: 26993527 [PubMed - indexed for MEDLINE] 2016 Aug;1864(8):896-907. doi: 10.1016/j.bbapap.2016.03.010. Epub 2016 Mar 16. Review. 5.34
Goncalves EC, Koh J, Zhu N, Yoo MJ, Chen S, Matsuo T, Johnson JV, Rathinasabapathi B. Nitrogen starvation-induced accumulation of triacylglycerol in the green algae: evidence for a role for ROC40, a transcription factor involved in circadian rhythm. Plant J. PMID: 26920093 [PubMed - in process] 2016 Mar;85(6):743-57. doi: 10.1111/tpj.13144. 5.468
Yoo MJ, Ma T, Zhu N, Liu L, Harmon AC, Wang Q, Chen S. Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cells. Plant Mol Biol. PMID: 26898295 [PubMed - indexed for MEDLINE] 2016 May;91(1-2):211-27. doi: 10.1007/s11103-016-0456-9. Epub 2016 Feb 22.3.905
Zhang T, Chen S, Harmon AC. Protein-protein interactions in plant mitogen-activated protein kinase cascades. J Exp Bot. PMID: 26646897 [PubMed - in process] 2016 Feb;67(3):607-18. doi: 10.1093/jxb/erv508. Epub 2015 Dec 7. Review.5.677
Dantuluri S, Wu Y, Hepowit NL, Chen H, Chen S, Maupin-Furlow JA. Proteome targets of ubiquitin-like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcanii. Proteomics. PMID: 26841191 [PubMed - in process] 2016 Apr;16(7):1100-10. doi: 10.1002/pmic.201500153.4.079
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Rojas-Benitez D, Thiaville PC, de Crécy-Lagard V, Glavic A. The Levels of a Universally Conserved tRNA Modification Regulate Cell Growth. J Biol Chem. PMID: 26063805 2015 Jul 24;290(30):18699-707. doi: 10.1074/jbc.M115.665406. 4.258
Martyniuk CJ, Doperalski NJ, Prucha MS, Zhang JL, Kroll KJ, Conrow R, Barber DS, Denslow ND. High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27397556 [PubMed - in process] 2016 Sep;19:140-50. doi: 10.1016/j.cbd.2016.06.003. Epub 2016 Jun 20. 2.254
Martyniuk CJ, Doperalski NJ, Feswick A, Prucha MS, Kroll KJ, Barber DS, Denslow ND. Transcriptional networks associated with the immune system are disrupted by organochlorine pesticides in largemouth bass (Micropterus salmoides) ovary. Aquat Toxicol. PMID: 27391359 [PubMed - in process] 2016 Aug;177:405-16. doi: 10.1016/j.aquatox.2016.06.009. Epub 2016 Jun 17. 3.557
Dreier DA, Loughery JR, Denslow ND, Martyniuk CJ. The influence of breeding strategy, reproductive stage, and tissue type on transcript variability in fish. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27325421 [PubMed - in process] 2016 Sep;19:151-8. doi: 10.1016/j.cbd.2016.05.005. Epub 2016 Jun 4.2.254
Rodriguez-Jorquera IA, Silva-Sanchez C, Strynar M, Denslow ND, Toor GS. Footprints of Urban Micro-Pollution in Protected Areas: Investigating the Longitudinal Distribution of Perfluoroalkyl Acids in Wildlife Preserves. PLoS One. PMID: 26909512 [PubMed - indexed for MEDLINE] Free PMC Article 2016 Feb 24;11(2):e0148654. doi: 10.1371/journal.pone.0148654. eCollection 2016.3.057
Collí-Dulá RC, Martyniuk CJ, Streets S, Denslow ND, Lehr R. Molecular impacts of perfluorinated chemicals (PFASs) in the liver and testis of male largemouth bass (Micropterus salmoides) in Minnesota Lakes. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 26907229 [PubMed - in process] 2016 Sep;19:129-39. doi: 10.1016/j.cbd.2016.02.001. Epub 2016 Feb 6.2.254
Supowit SD, Roll IB, Dang VD, Kroll KJ, Denslow ND, Halden RU. Active Sampling Device for Determining Pollutants in Surface and Pore Water - the In Situ Sampler for Biphasic Water Monitoring. Sci Rep. PMID: 26905924 [PubMed - in process] Free PMC Article 2016 Feb 24;6:21886. doi: 10.1038/srep21886.5.228
Dang VD, Kroll KJ, Supowit SD, Halden RU, Denslow ND. Bioaccumulation of Legacy and Emerging Organochlorine Contaminants in Lumbriculus variegatus. Arch Environ Contam Toxicol. PMID: 26833202 [PubMed - in process] 2016 Jul;71(1):60-9. doi: 10.1007/s00244-016-0264-x. Epub 2016 Feb 1.2.039
Adeyemo OK, Kroll KJ, Denslow ND. Developmental abnormalities and differential expression of genes induced in oil and dispersant exposed Menidia beryllina embryos. Aquat Toxicol. PMID: 26448268 [PubMed - indexed for MEDLINE] 2015 Nov;168:60-71. doi: 10.1016/j.aquatox.2015.09.012. Epub 2015 Sep 26. 3.557
Maruya KA, Dodder NG, Mehinto AC, Denslow ND, Schlenk D, Snyder SA, Weisberg SB. A tiered, integrated biological and chemical monitoring framework for contaminants of emerging concern in aquatic ecosystems. Integr Environ Assess Manag. PMID: 26426153 [PubMed - in process] 2016 Jul;12(3):540-7. doi: 10.1002/ieam.1702. Epub 2015 Nov 1.1.53
Baldigo BP, George SD, Phillips PJ, Hemming JD, Denslow ND, Kroll KJ. Potential estrogenic effects of wastewaters on gene expression in Pimephales promelas and fish assemblages in streams of southeastern New York. Environ Toxicol Chem. PMID: 26423596 [PubMed - indexed for MEDLINE] 2015 Dec;34(12):2803-15. doi: 10.1002/etc.3120. Epub 2015 Oct 29.2.763
Vidal-Dorsch DE, Bay SM, Moore S, Layton B, Mehinto AC, Vulpe CD, Brown-Augustine M, Loguinov A, Poynton H, Garcia-Reyero N, Perkins EJ, Escalon L, Denslow ND, Cristina CD, Doan T, Shukradas S, Bruno J, Brown L, Van Agglen G, Jackman P, Bauer M. Ecotoxicogenomics: Microarray interlaboratory comparability. Chemosphere. PMID: 26363320 [PubMed - indexed for MEDLINE] 2016 Feb;144:193-200. doi: 10.1016/j.chemosphere.2015.08.019. Epub 2015 Sep 10. Mehinto AC, Jia A, Snyder SA, Jayasinghe BS, Denslow ND, Crago J, Schlenk D, Menzie C, Westerheide SD, Leusch FD, Maruya KA. Interlaboratory comparison of in vitro bioassays for screening of endocrine active chemicals in recycled water. Water Res. PMID: 26177482 [PubMed - indexed for MEDLINE] 2015 Oct 15;83:303-9. doi: 10.1016/j.watres.2015.06.050. Epub 2015 Jul 6.5.991
Mukker JK, Singh RS, Derendorf H. Ciclesonide: A Pro-Soft Drug Approach for Mitigation of Side Effects of Inhaled Corticosteroids. J Pharm Sci. PMID: 27339407 [PubMed - in process] 2016 Sep;105(9):2509-14. doi: 10.1016/j.xphs.2016.05.004. Epub 2016 Jun 21.2.641
Shilbayeh SA, Sy SK, Melhem M, Zmeili R, Derendorf H. Quantitation of the impact of CYP3A5 A6986G polymorphism on quetiapine pharmacokinetics by simulation of target attainment. Clin Pharmacol Drug Dev. PMID: 27137148 [PubMed - in process] 2015 Sep;4(5):387-94. doi: 10.1002/cpdd.172. Epub 2015 Jan 12.1.312
Sy SK, Beaudoin ME, Zhuang L, Löblein KI, Lux C, Kissel M, Tremmel R, Frank C, Strasser S, Heuberger JA, Mulder MB, Schuck VJ, Derendorf H. In vitro pharmacokinetics/pharmacodynamics of the combination of avibactam and aztreonam against MDR organisms. J Antimicrob Chemother. PMID: 27107096 [PubMed - in process] 2016 Jul;71(7):1866-80. doi: 10.1093/jac/dkw082. Epub 2016 Apr 21.4.919
Augustijns P, Loftsson T, Davies M, Derendorf H, Mesens J, Verreck G. A Tribute to Dr. Marcus E. Brewster: October 14, 1957-September 15, 2014. J Pharm Sci. PMID: 27012223 [PubMed - in process] 2016 Sep;105(9):2466-7. doi: 10.1016/j.xphs.2016.02.001. Epub 2016 Mar 22. No abstract available.2.641
Lampotang S, Lizdas DE, Derendorf H, Gravenstein N, Lok B, Quarles JP. Race-Specific Pharmacodynamic Model of Propofol-Induced Loss of Consciousness. J Clin Pharmacol. PMID: 26865382 [PubMed - in process] 2016 Sep;56(9):1141-50. doi: 10.1002/jcph.716. Epub 2016 Mar 28.2.555
Zhuang L, He Y, Xia H, Liu Y, Sy SK, Derendorf H. Gentamicin dosing strategy in patients with end-stage renal disease receiving haemodialysis: evaluation using a semi-mechanistic pharmacokinetic/pharmacodynamic model. J Antimicrob Chemother. PMID: 26702923 [PubMed - in process] 2016 Apr;71(4):1012-21. doi: 10.1093/jac/dkv428. Epub 2015 Dec 24.4.919
Sy SK, Zhuang L, Derendorf H. Pharmacokinetics and pharmacodynamics in antibiotic dose optimization. Lachi-Silva L, Sy SK, Voelkner A, de Sousa JP, Lopes JL, Silva DB, Lopes NP, Kimura E, Derendorf H, Diniz A. Simultaneous Characterization of Intravenous and Oral Pharmacokinetics of Lychnopholide in Rats by Transit Compartment Model. Planta Med. PMID: 26218336 [PubMed - indexed for MEDLINE] 2015 Aug;81(12-13):1121-7. doi: 10.1055/s-0035-1546214. Epub 2015 Jul 28. 1.99
An G, Mukker JK, Derendorf H, Frye RF. Enzyme- and transporter-mediated beverage-drug interactions: An update on fruit juices and green tea. J Clin Pharmacol. PMID: 26095990 [PubMed - in process] 2015 Dec;55(12):1313-31. doi: 10.1002/jcph.563. Epub 2015 Jul 30.2.555
Azeredo FJ, Hass SE, Sansone P, Derendorf H, Costa TD, De Araujo BV. Does the Anesthetic Urethane Influence the Pharmacokinetics of Antifungal Drugs? A Population Pharmacokinetic Investigation in Rats. J Pharm Sci. PMID: 26087701 [PubMed - indexed for MEDLINE] 2015 Oct;104(10):3314-8. doi: 10.1002/jps.24552. Epub 2015 Jun 18.2.641
Lachi-Silva L, Sy SK, Voelkner A, de Sousa JP, Lopes JL, Silva DB, Lopes NP, Kimura E, Derendorf H, Diniz A. Simultaneous Characterization of Intravenous and Oral Pharmacokinetics of Lychnopholide in Rats by Transit Compartment Model. Planta Med. PMID: 26218336. 2015 Aug;81(12-13):1121-7. doi: 10.1055/s-0035-1546214. Epub 2015 Jul 28.1.99
Yuan X, Devine DP. The role of anxiety in vulnerability for self-injurious behaviour: studies in a rodent model. Behav Brain Res. PMID: 27217100 [PubMed - in process] 2016 Sep 15;311:201-9. doi: 10.1016/j.bbr.2016.05.041. Epub 2016 May 20.3.002
Butler MG, Nelson TA, Driscoll DJ, Manzardo AM. EVALUATION OF PLASMA SUBSTANCE P AND BETA-ENDORPHIN LEVELS IN CHILDREN WITH PRADER-WILLI SYNDROME. J Rare Disord. PMID: 27570781. 2015 Sep;3(2). pii: http://www.journalofraredisorders.com/pub/IssuePDFs/Final.pdf.3.29
Manzardo AM, Johnson L, Miller JL, Driscoll DJ, Butler MG. Higher plasma orexin A levels in children with Prader-Willi syndrome compared with healthy unrelated sibling controls. Am J Med Genet A. PMID: 27214028. 2016 Aug;170(8):2097-102. doi: 10.1002/ajmg.a.37749. Epub 2016 May 23.2.082
Butler MG, Lee J, Cox DM, Manzardo AM, Gold JA, Miller JL, Roof E, Dykens E, Kimonis V, Driscoll DJ. Growth Charts for Prader-Willi Syndrome During Growth Hormone Treatment. Clin Pediatr (Phila). PMID: 26842920. 2016 Sep;55(10):957-74. doi: 10.1177/0009922815617973. Epub 2016 Feb 3.0.954
Grams SE, Argiropoulos B, Lines M, Chakraborty P, Mcgowan-Jordan J, Geraghty MT, Tsang M, Eswara M, Tezcan K, Adams KL, Linck L, Himes P, Kostiner D, Zand DJ, Stalker H, Driscoll DJ, Huang T, Rosenfeld JA, Li X, Chen E. Genotype-phenotype characterization in 13 individuals with chromosome Xp11.22 duplications. Am J Med Genet A. PMID: 26692240. 2016 Apr;170A(4):967-77. doi: 10.1002/ajmg.a.37519. Epub 2015 Dec 22.2.082
Johnson L, Manzardo AM, Miller JL, Driscoll DJ, Butler MG. Elevated plasma oxytocin levels in children with Prader-Willi syndrome compared with healthy unrelated siblings. Am J Med Genet A. PMID: 26615966. 2016 Mar;170(3):594-601. doi: 10.1002/ajmg.a.37488. Epub 2015 Nov 30.2.082
Butler MG, Nelson TA, Driscoll DJ, Manzardo AM. High plasma neurotensin levels in children with Prader-Willi syndrome. Am J Med Genet A. PMID: 25847417. 2015 Aug;167A(8):1773-8. doi: 10.1002/ajmg.a.37103. Epub 2015 Apr 5.2.082
Liu P, Robbins AH, Marzahn MR, McClung SH, Yowell CA, Stevens SM Jr, Dame JB, Dunn BM. Enzymatic Characterization of Recombinant Food Vacuole Plasmepsin 4 from the Rodent Malaria Parasite Plasmodium berghei. PLoS One. PMID: 26510189. 2015 Oct 28;10(10):e0141758. doi: 10.1371/journal.pone.0141758. eCollection 2015.3.057
Singh AK, Rathore S, Tang Y, Goldfarb NE, Dunn BM, Rajendran V, Ghosh PC, Singh N, Latha N, Singh BK, Rawat M, Rathi B. Hydroxyethylamine Based Phthalimides as New Class of Plasmepsin Hits: Design, Synthesis and Antimalarial Evaluation. PLoS One. PMID: 26502278. 2015 Oct 26;10(10):e0139347. doi: 10.1371/journal.pone.0139347. eCollection 2015.3.057
Mercadante VR, Fontes PL, Ciriaco FM, Henry DD, Moriel P, Ealy AD, Johnson SE, DiLorenzo N, Lamb GC.Effects of recombinant bovine somatotropin administration at breeding on cow, conceptus, and subsequent offspring performance of beef cattle. J Anim Sci. PMID: 27285709. 2016 May;94(5):2128-38. doi: 10.2527/jas.2015-0217.2.014
Mercadante PM, Ribeiro ES, Risco C, Ealy AD. Associations between pregnancy-associated glycoproteins and pregnancy outcomes, milk yield, parity, and clinical diseases in high-producing dairy cows. J Dairy Sci. PMID: 26851856. 2016 Apr;99(4):3031-40. doi: 10.3168/jds.2015-10595. Epub 2016 Feb 3.2.408
Xie M, McCoski SR, Johnson SE, Rhoads ML, Ealy AD. Combinatorial effects of epidermal growth factor, fibroblast growth factor 2 and insulin-like growth factor 1 on trophoblast cell proliferation and embryogenesis in cattle. Reprod Fertil Dev. PMID: 26304178. 2015 Aug 25. doi: 10.1071/RD15226. [Epub ahead of print]2.135
Yang QE, Ozawa M, Zhang K, Johnson SE,   Ealy AD. The requirement for protein kinase C delta (PRKCD) during preimplantation bovine embryo development. Reprod Fertil Dev. PMID: 25116760. 2016 Mar;28(4):482-90. doi: 10.1071/RD14160.2.135
Xie G, Chastain-Gross RP, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A. Genome Sequence of Porphyromonas gingivalis Strain AJW4. Genome Announc. PMID: 26543127. 2015 Nov 5;3(6). pii: e01304-15. doi: 10.1128/genomeA.01304-15.1.18
Chastain-Gross RP, Xie G, Bélanger M, Kumar D, Whitlock JA, Liu L, Farmerie WG, Daligault HE, Han CS, Brettin TS, Progulske-Fox A. Genome Sequence of Porphyromonas gingivalis Strain A7436. Genome Announc. PMID: 26404590. 2015 Sep 24;3(5). pii: e00927-15. doi: 10.1128/genomeA.00927-15.1.18
McFarland KN, Liu J, Landrian I, Godiska R, Shanker S, Yu F, Farmerie WG, Ashizawa T. SMRT Sequencing of Long Tandem Nucleotide Repeats in SCA10 Reveals Unique Insight of Repeat Expansion Structure. PLoS One. PMID: 26295943. 2015 Aug 21;10(8):e0135906. doi: 10.1371/journal.pone.0135906. eCollection 2015.3.057
Richter C, Taylor J, Wright J, Fletcher B. Clinical Validation of R-T Estimation for CoaguChek XS INR Results. Ann Pharmacother. PMID: 27199494. 2016 Aug;50(8):645-8. doi: 10.1177/1060028016647975. Epub 2016 May 19.2.119
Carvalho SD, Schwieterman ML, Abrahan CE, Colquhoun TA, Folta KM. Light Quality Dependent Changes in Morphology, Antioxidant Capacity, and Volatile Production in Sweet Basil (Ocimum basilicum). Front Plant Sci. PMID: 27635127. 2016 Sep 1;7:1328. doi: 10.3389/fpls.2016.01328. eCollection 2016.4.495
Carvalho SD, Chatterjee M, Coleman L, Clancy MA, Folta KM. Analysis of Block of cell proliferation 1 (BOP1) activity in strawberry and Arabidopsis. Plant Sci. PMID: 26940494. 2016 Apr;245:84-93. doi: 10.1016/j.plantsci.2016.01.002. Epub 2016 Jan 28.3.362
Sánchez-Sevilla JF, Horvath A, Botella MA, Gaston A, Folta K, Kilian A, Denoyes B, Amaya I. Diversity Arrays Technology (DArT) Marker Platforms for Diversity Analysis and Linkage Mapping in a Complex Crop, the Octoploid Cultivated Strawberry (Fragaria × ananassa). PLoS One. PMID: 26675207. 2015 Dec 16;10(12):e0144960. doi: 10.1371/journal.pone.0144960. eCollection 2015.3.057
Amaya I, Pillet J, Folta KM. Identification of Genes Responsible for Natural Variation in Volatile Content Using Next-Generation Sequencing Technology. Methods Mol Biol. PMID: 26577779. 2016;1363:37-45. doi: 10.1007/978-1-4939-3115-6_4.1.17
Pillet J, Yu HW, Chambers AH, Whitaker VM, Folta KM. Identification of candidate flavonoid pathway genes using transcriptome correlation network analysis in ripe strawberry (Fragaria × ananassa) fruits. J Exp Bot. PMID: 25979996. 2015 Aug;66(15):4455-67. doi: 10.1093/jxb/erv205. Epub 2015 May 15.5.677
Silva KJ, Brunings A, Peres NA, Mou Z, Folta KM. The Arabidopsis NPR1 gene confers broad-spectrum disease resistance in strawberry. Transgenic Res. PMID: 25812515. 2015 Aug;24(4):693-704. doi: 10.1007/s11248-015-9869-5. Epub 2015 Mar 27.2.054
Warden JG, Casaburi G, Omelon CR, Bennett PC, Breecker DO, Foster JS. Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics. Front Microbiol. PMID: 27458453. 2016 Jul 6;7:1064. doi: 10.3389/fmicb.2016.01064. eCollection 2016.3.573
Paul VG, Wronkiewicz DJ, Mormile MR, Foster JS. Mineralogy and Microbial Diversity of the Microbialites in the Hypersaline Storr's Lake, the Bahamas. Astrobiology. PMID: 27082142. 2016 Apr;16(4):282-300. doi: 10.1089/ast.2015.1326.2.628
Suosaari EP, Reid RP, Playford PE, Foster JS, Stolz JF, Casaburi G, Hagan PD, Chirayath V, Macintyre IG, Planavsky NJ, Eberli GP. New multi-scale perspectives on the stromatolites of Shark Bay, Western Australia.Sci Rep. PMID: 26838605. 2016 Feb 3;6:20557. doi: 10.1038/srep20557.5.228
Casaburi G, Duscher AA, Reid RP, Foster JS. Characterization of the stromatolite microbiome from Little Darby Island, The Bahamas using predictive and whole shotgun metagenomic analysis. Environ Microbiol. PMID: 26471001. 2016 May;18(5):1452-69. doi: 10.1111/1462-2920.13094. Epub 2015 Dec 10.5.932
Mobberley JM, Khodadad CL, Visscher PT, Reid RP, Hagan P, Foster JS. Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling. Sci Rep. PMID: 26213359. 2015 Jul 27;5:12601. doi: 10.1038/srep12601.5.228
Febo M, Foster TC. Preclinical Magnetic Resonance Imaging and Spectroscopy Studies of Memory, Aging, and Cognitive Decline. Front Aging Neurosci. PMID: 27468264. 2016 Jun 29;8:158. doi: 10.3389/fnagi.2016.00158. eCollection 2016. Review.4.348
Ianov L, Rani A, Beas BS, Kumar A, Foster TC. Transcription Profile of Aging and Cognition-Related Genes in the Medial Prefrontal Cortex. Front Aging Neurosci. PMID: 27242522. 2016 May 17;8:113. doi: 10.3389/fnagi.2016.00113. eCollection 2016.4.348
Foster TC, Kyritsopoulos C, Kumar A. Central role for NMDA receptors in redox mediated impairment of synaptic function during aging and Alzheimer's disease. Behav Brain Res. PMID: 27180169. 2016 May 11. pii: S0166-4328(16)30278-9. doi: 10.1016/j.bbr.2016.05.012. [Epub ahead of print]3.002
Gómez-Chacón B, Gámiz F, Foster TC, Gallo M. Increased N-Ethylmaleimide-Sensitive Factor Expression in Amygdala and Perirhinal Cortex during Habituation of Taste Neophobia. Neural Plast. PMID: 26839712. 2016;2016:2726745. doi: 10.1155/2016/2726745. Epub 2015 Dec 29.3.568
Bean LA, Kumar A, Rani A, Guidi M, Rosario AM, Cruz PE, Golde TE, Foster TC. Re-Opening the Critical Window for Estrogen Therapy. J Neurosci. PMID: 26658861. 2015 Dec 9;35(49):16077-93. doi: 10.1523/JNEUROSCI.1890-15.2015.5.924
Guidi M, Rani A, Karic S, Severance B, Kumar A, Foster TC. Contribution of N-methyl-D-aspartate receptors to attention and episodic spatial memory during senescence. Neurobiol Learn Mem. PMID: 26234588. 2015 Nov;125:36-46. doi: 10.1016/j.nlm.2015.07.015. Epub 2015 Jul 30.3.439
Scheinert RB, Asokan A, Rani A, Kumar A, Foster TC, Ormerod BK. Some hormone, cytokine and chemokine levels that change across lifespan vary by cognitive status in male Fischer 344 rats. Brain Behav Immun. PMID: 26093306. 2015 Oct;49:216-32. doi: 10.1016/j.bbi.2015.06.005. Epub 2015 Jun 18.5.874
Kumar A, Bean LA, Rani A, Jackson T, Foster TC. Contribution of estrogen receptor subtypes, ERα, ERβ, and GPER1 in rapid estradiol-mediated enhancement of hippocampal synaptic transmission in mice. Hippocampus. PMID: 25980457. 2015 Dec;25(12):1556-66. doi: 10.1002/hipo.22475.4.074
Jain M, Fleites LA, Gabriel DW. Prophage-Encoded Peroxidase in 'Candidatus Liberibacter asiaticus' Is a Secreted Effector That Suppresses Plant Defenses. Mol Plant Microbe Interact. PMID: 26313412. 2015 Dec;28(12):1330-7. doi: 10.1094/MPMI-07-15-0145-R. Epub 2015 Nov 5.4.145
Zhang S, Chakrabarty PK, Fleites LA, Rayside PA, Hopkins DL, Gabriel DW. Three New Pierce's Disease Pathogenicity Effectors Identified Using Xylella fastidiosa Biocontrol Strain EB92-1. PLoS One. PMID: 26218423. 2015 Jul 28;10(7):e0133796. doi: 10.1371/journal.pone.0133796. eCollection 2015. 3.057
Orsborne J, DeRaedt Banks S, Hendy A, Gezan SA, Kaur H, Wilder-Smith A, Lindsay SW, Logan JG. Personal Protection of Permethrin-Treated Clothing against Aedes aegypti, the Vector of Dengue and Zika Virus, in the Laboratory. PLoS One. PMID: 27187593. 2016 May 17;11(5):e0152805. doi: 10.1371/journal.pone.0152805. eCollection 2016.3.057
Nazarian A, Gezan SA. GenoMatrix: A Software Package for Pedigree-Based and Genomic Prediction Analyses on Complex Traits. J Hered. PMID: 27025440. 2016 Jul;107(4):372-9. doi: 10.1093/jhered/esw020. Epub 2016 Mar 29.2.075
Nazarian A, Gezan SA. Integrating Nonadditive Genomic Relationship Matrices into the Study of Genetic Architecture of Complex Traits. J Hered. PMID: 26712858. 2016 Mar;107(2):153-62. doi: 10.1093/jhered/esv096. Epub 2015 Dec 27.2.075
DeRaedt Banks S, Orsborne J, Gezan SA, Kaur H, Wilder-Smith A, Lindsey SW, Logan JG. Permethrin-Treated Clothing as Protection against the Dengue Vector, Aedes aegypti: Extent and Duration of Protection. PLoS Negl Trop Dis. PMID: 26440967. 2015 Oct 6;9(10):e0004109. doi: 10.1371/journal.pntd.0004109. eCollection 2015.3.948
Gilbert JL, Guthart MJ, Gezan SA, Pisaroglo de Carvalho M, Schwieterman ML, Colquhoun TA, Bartoshuk LM, Sims CA, Clark DG, Olmstead JW. Identifying Breeding Priorities for Blueberry Flavor Using Biochemical, Sensory, and Genotype by Environment Analyses. PLoS One. PMID: 26378911. 2015 Sep 17;10(9):e0138494. doi: 10.1371/journal.pone.0138494. eCollection 2015.3.057
Smith AD, Morton AJ, Winter MD, Colahan PT, Ghivizzani S, Brown MP, Hernandez JA, Nickerson DM. MAGNETIC RESONANCE IMAGING SCORING OF AN EXPERIMENTAL MODEL OF POST-TRAUMATIC OSTEOARTHRITIS IN THE EQUINE CARPUS. Vet Radiol Ultrasound. PMID: 27198611. 2016 Sep;57(5):502-14. doi: 10.1111/vru.12369. Epub 2016 May 19.0.926
Gillooly JF, Gomez JP, Mavrodiev EV, Rong Y, McLamore ES. Body mass scaling of passive oxygen diffusion in endotherms and ectotherms. Proc Natl Acad Sci U S A. PMID: 27118837. 2016 May 10;113(19):5340-5. doi: 10.1073/pnas.1519617113. Epub 2016 Apr 26.9.423
Nifong RL, Gillooly JF. Temperature effects on virion volume and genome length in dsDNA viruses. Biol Lett. PMID: 27029837. 2016 Mar;12(3):20160023. doi: 10.1098/rsbl.2016.0023.2.823
Haase CG, Long AK, Gillooly JF. Energetics of stress: linking plasma cortisol levels to metabolic rate in mammals. Biol Lett. PMID: 26740562. 2016 Jan;12(1):20150867. doi: 10.1098/rsbl.2015.0867.2.823
Gillooly JF, Hein A, Damiani R. Nuclear DNA Content Varies with Cell Size across Human Cell Types. Cold Spring Harb Perspect Biol. PMID: 26134319. 2015 Jul 1;7(7):a019091. doi: 10.1101/cshperspect.a019091. Review.9.173
De la Cruz MA, Morgan JK, Ares MA, Yáñez-Santos JA, Riordan JT, Girón JA. The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ(32) and Lon protease. Front Cell Infect Microbiol. PMID: 26904510. 2016 Feb 5;6:11. doi: 10.3389/fcimb.2016.00011. eCollection 2016.5.218
Kudva IT, Carter MQ, Sharma VK, Stasko JA, Giron JA. Curli Tempers Adherence of Escherichia coli O157:H7 to Bovine Recto-Anal Junction Squamous Epithelial Cells in a Strain Dependent Manner. Appl Environ Microbiol. PMID: 27742683. 2016 Oct 14. pii: AEM.02594-16.3.823
Smith SM, Huo T, Gong Y, Handberg E, Gulati M, Merz CN, Pepine CJ, Cooper-DeHoff RM. Mortality Risk Associated With Resistant Hypertension Among Women: Analysis from Three Prospective Cohorts Encompassing the Spectrum of Women's Heart Disease. J Womens Health (Larchmt). PMID: 27224417. 2016 Oct;25(10):996-1003.
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Prabhakaran S, Kim K, Gong Y, Hendeles L. Long-term variability of exhaled nitric oxide measurements. J Allergy Clin Immunol Pract. PMID: 26563669. 2016 Jan-Feb;4(1):147-8.e1. doi: 10.1016/j.jaip.2015.09.010. Epub 2015 Nov 7. No abstract available.5.429
Pagliai FA, Gonzalez CF, Lorca GL. Identification of a Ligand Binding Pocket in LdtR from Liberibacter asiaticus. Front Microbiol. PMID: 26635775. 2015 Nov 25;6:1314. doi: 10.3389/fmicb.2015.01314. eCollection 2015. 4.165
Romero JJ, Ma ZX, Gonzalez CF, Adesogan AT. Effect of adding cofactors to exogenous fibrolytic enzymes on preingestive hydrolysis, in vitro digestibility, and fermentation of bermudagrass haylage. J Dairy Sci. PMID: 25935239. 2015 Jul;98(7):4659-72. doi: 10.3168/jds.2014-8849. Epub 2015 Apr 29.2.408
Wallet MA, Buford TW, Joseph AM, Sankuratri M, Leeuwenburgh C, Pahor M, Manini T, Sleasman JW, Goodenow MM. Increased inflammation but similar physical composition and function in older-aged, HIV-1 infected subjects. BMC Immunol. PMID: 26204934. 2015 Jul 24;16:43. doi: 10.1186/s12865-015-0106-z. 2.161
Appelberg KS, Goodenow MM. Editorial: Passive aggressive avoidance of SAMHD1 restriction by HIV-1. J Leukoc Biol. PMID: 26130765. 2015 Jul;98(1):1-3. doi: 10.1189/jlb.4CE0215-044R. No abstract available. 4.165
Wang J, Presser JW, Goss EM. Nuclear DNA content of the hybrid plant pathogen Phytophthora andina determined by flow cytometry. Mycologia. PMID: 27302049. 2016 Jun 13. pii: 15-107. [Epub ahead of print]2.638
Presser JW, Goss EM. Environmental sampling reveals that Pythium insidiosum is ubiquitous and genetically diverse in North Central Florida. Med Mycol. PMID: 26229152. 2015 Sep;53(7):674-83. doi: 10.1093/mmy/myv054. Epub 2015 Jul 30.2.644
Czarnecka-Verner E, Salem TA, Gurley WB. Adaptation of the Agrobacterium tumefaciens VirG response regulator to activate transcription in plants. Plant Mol Biol. MID: 26646288. 2016 Feb;90(3):217-31. doi: 10.1007/s11103-015-0407-x. Epub 2015 Dec 8.3.905
Son M, Shields RC, Ahn SJ, Burne RA, Hagen SJ. Bidirectional signaling in the competence regulatory pathway of Streptococcus mutans. FEMS Microbiol Lett. PMID: 26363019. 2015 Oct;362(19). pii: fnv159. doi: 10.1093/femsle/fnv159. Epub 2015 Sep 10. 1.858
Son M, Ghoreishi D, Ahn SJ, Burne RA, Hagen SJ. Sharply Tuned pH Response of Genetic Competence Regulation in Streptococcus mutans: a Microfluidic Study of the Environmental Sensitivity of comX. Appl Environ Microbiol. PMID: 26070670. 2015 Aug 15;81(16):5622-31. doi: 10.1128/AEM.01421-15. Epub 2015 Jun 12. 3.823
Meyers PJ, Powell TH, Walden KK, Schieferecke AJ, Feder JL, Hahn DA, Robertson HM, Berlocher SH, Ragland GJ. Divergence of the diapause transcriptome in apple maggot flies: winter regulation and post-winter transcriptional repression. J Exp Biol. PMID: 27312473. 2016 Sep 1;219(Pt 17):2613-22. doi: 10.1242/jeb.140566. Epub 2016 Jun 16.2.914
Heck MJ, Pehlivanovic M, Purcell JU, Hahn DA, Hatle JD. Life-extending Dietary Restriction Reduces Oxidative Damage of Proteins in Grasshoppers but Does Not Alter Allocation of Ingested Nitrogen to Somatic Tissues. J Gerontol A Biol Sci Med Sci. PMID: 27307298. 2016 Jun 15. pii: glw094. [Epub ahead of print]5.476
Bentley MT, Hahn DA, Oi FM. The Thermal Breadth of Nylanderia fulva (Hymenoptera: Formicidae) Is Narrower Than That of Solenopsis invicta at Three Thermal Ramping Rates: 1.0, 0.12, and 0.06°C min-1. Environ Entomol. PMID: 27252409. 2016 Aug;45(4):1058-62. doi: 10.1093/ee/nvw050. Epub 2016 Jun 1.1.315
Williams CM, Szejner-Sigal A, Morgan TJ, Edison AS, Allison DB, Hahn DA. Adaptation to Low Temperature Exposure Increases Metabolic Rates Independently of Growth Rates. Integr Comp Biol. PMID: 27103615. 2016 Jul;56(1):62-72. doi: 10.1093/icb/icw009. Epub 2016 Apr 21. Review.2.957
Bentley MT, Oi FM, Gezan SA, Hahn DA. Tunneling Performance Increases at Lower Temperatures for Solenopsis invicta (Buren) but not for Nylanderia fulva (Mayr). Insects. PMID: 26463409 . 2015 Jul 23;6(3):686-95. doi: 10.3390/insects6030686.1.94
Tetlak AG, Burnett JB, Hahn DA, Hatle JD. Vitellogenin-RNAi and ovariectomy each increase lifespan, increase protein storage, and decrease feeding, but are not additive in grasshoppers. Biogerontology. PMID: 26298568. 2015 Dec;16(6):761-74. doi: 10.1007/s10522-015-9599-3. Epub 2015 Aug 23.3.252
Schetelig MF, Targovska A, Meza JS, Bourtzis K, Handler AM. Tetracycline-suppressible female lethality and sterility in the Mexican fruit fly, Anastrepha ludens. Insect Mol Biol. PMID: 27135433. 2016 Aug;25(4):500-8. doi: 10.1111/imb.12238. Epub 2016 May 2.2.866
Peng W, Zheng W, Handler AM, Zhang H. The role of the transformer gene in sex determination and reproduction in the tephritid fruit fly, Bactrocera dorsalis (Hendel). Genetica. PMID: 26481008. 2015 Dec;143(6):717-27. doi: 10.1007/s10709-015-9869-7.1.343
Handler AM. Enhancing the stability and ecological safety of mass-reared transgenic strains for field release by redundant conditional lethality systems. Insect Sci. PMID: 26097098. 2016 Apr;23(2):225-34. doi: 10.1111/1744-7917.12245. Epub 2015 Oct 26. Review.2.551
Chen Z, Hagen DE, Wang J, Elsik CG, Ji T, Siqueira LG, Hansen PJ, Rivera RM. Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. Epigenetics. PMID: 27245094. 2016 Jul 2;11(7):501-16. doi: 10.1080/15592294.2016.1184805. Epub 2016 May 31. 4.774
Kannampuzha-Francis J, Tribulo P, Hansen PJ. Actions of activin A, connective tissue growth factor, hepatocyte growth factor and teratocarcinoma-derived growth factor 1 on the development of the bovine preimplantation embryo. Reprod Fertil Dev. PMID: 27185102. 2016 May 17. doi: 10.1071/RD16033. [Epub ahead of print]2.135
Ozawa M, Sakatani M, Dobbs KB, Kannampuzha-Francis J, Hansen PJ. Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2. BMC Res Notes. PMID: 27130208. 2016 Apr 29;9:250. doi: 10.1186/s13104-016-2038-y. 1.6
Serrano-Pérez B, Hansen PJ, Mur-Novales R, García-Ispierto I, de Sousa NM, Beckers JF, Almería S, López-Gatius F. Crosstalk between uterine serpin (SERPINA14) and pregnancy-associated glycoproteins at the fetal-maternal interface in pregnant dairy heifers experimentally infected with Neospora caninum. Theriogenology. PMID: 27045629. 2016 Aug;86(3):824-30. doi: 10.1016/j.theriogenology.2016.03.003. Epub 2016 Mar 11.1.838
Acosta DA, Denicol AC, Tribulo P, Rivelli MI, Skenandore C, Zhou Z, Luchini D, Corrêa MN, Hansen PJ, Cardoso FC. Effects of rumen-protected methionine and choline supplementation on the preimplantation embryo in Holstein cows. Theriogenology. PMID: 26928647. 2016 Jun;85(9):1669-79. doi: 10.1016/j.theriogenology.2016.01.024. Epub 2016 Feb 4.1.838
Ortega MS, Denicol AC, Cole JB, Null DJ, Hansen PJ. Use of single nucleotide polymorphisms in candidate genes associated with daughter pregnancy rate for prediction of genetic merit for reproduction in Holstein cows. Anim Genet. PMID: 26923315. 2016 Jun;47(3):288-97. doi: 10.1111/age.12420. Epub 2016 Feb 28.1.779
Hansen PJ, Dobbs KB, Denicol AC, Siqueira LG. Sex and the preimplantation embryo: implications of sexual dimorphism in the preimplantation period for maternal programming of embryonic development. Cell Tissue Res. PMID: 26391275. 2016 Jan;363(1):237-47. doi: 10.1007/s00441-015-2287-4. Review.2.948
Kannampuzha-Francis J, Denicol AC, Loureiro B, Kaniyamattam K, Ortega MS, Hansen PJ. Exposure to colony stimulating factor 2 during preimplantation development increases postnatal growth in cattle. Mol Reprod Dev. PMID: 26227079. 2015 Nov;82(11):892-7. doi: 10.1002/mrd.22533. Epub 2015 Aug 10.2.141
Dikmen S, Wang XZ, Ortega MS, Cole JB, Null DJ, Hansen PJ. Single nucleotide polymorphisms associated with thermoregulation in lactating dairy cows exposed to heat stress. J Anim Breed Genet. PMID: 26198991. 2015 Dec;132(6):409-19. doi: 10.1111/jbg.12176. Epub 2015 Jul 21.1.745
Denicol AC, Leão BC, Dobbs KB, Mingoti GZ, Hansen PJ. Influence of Sex on Basal and Dickkopf-1 Regulated Gene Expression in the Bovine Morula. PLoS One. PMID: 26196299. 2015 Jul 21;10(7):e0133587. doi: 10.1371/journal.pone.0133587. eCollection 2015. 3.057
Kaltcheva MM, Anderson MJ, Harfe BD, Lewandoski M. BMPs are direct triggers of interdigital programmed cell death. Dev Biol. PMID: 26826495. 2016 Mar 15;411(2):266-76. doi: 10.1016/j.ydbio.2015.12.016. Epub 2016 Jan 27.3.155
Lawson L, Harfe BD. Notochord to Nucleus Pulposus Transition. Curr Osteoporos Rep. PMID: 26231139. 2015 Oct;13(5):336-41. doi: 10.1007/s11914-015-0284-x. Review.2.89
Huang AH, Riordan TJ, Pryce B, Weibel JL, Watson SS, Long F, Lefebvre V, Harfe BD, Stadler HS, Akiyama H, Tufa SF, Keene DR, Schweitzer R. Musculoskeletal integration at the wrist underlies the modular development of limb tendons. Development. PMID: 26062940. 2015 Jul 15;142(14):2431-41. doi: 10.1242/dev.122374. Epub 2015 Jun 10. 6.059
Yoo MJ, Ma T, Zhu N, Liu L, Harmon AC, Wang Q, Chen S. Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cells. Plant Mol Biol. PMID: 26898295. 2016 May;91(1-2):211-27. doi: 10.1007/s11103-016-0456-9. Epub 2016 Feb 22.3.905
Zhang T, Zhu M, Zhu N, Strul JM, Dufresne CP, Schneider JD, Harmon AC, Chen S. Identification of thioredoxin targets in guard cell enriched epidermal peels using cysTMT proteomics. J Proteomics. PMID: 26691838. 2016 Feb 5;133:48-53. doi: 10.1016/j.jprot.2015.12.008. Epub 2015 Dec 9.3.867
Zhang T, Chen S, Harmon AC. Protein-protein interactions in plant mitogen-activated protein kinase cascades. J Exp Bot. PMID: 26646897. 2016 Feb;67(3):607-18. doi: 10.1093/jxb/erv508. Epub 2015 Dec 7. Review.5.677
Stricker KB, Harmon PF, Goss EM, Clay K, Luke Flory S. Emergence and accumulation of novel pathogens suppress an invasive species. Ecol Lett. PMID: 26931647. 2016 Apr;19(4):469-77. doi: 10.1111/ele.12583. Epub 2016 Mar 2.10.772
Guo J, Fan J, Hauser BA, Rhee SY. Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing. G3 (Bethesda). PMID: 26530422. 2015 Nov 3;6(1):67-77. doi: 10.1534/g3.115.023671. 2.91
Hickmott JW, Chen CY, Arenillas DJ, Korecki AJ, Lam SL, Molday LL, Bonaguro RJ, Zhou M, Chou AY, Mathelier A, Boye SL, Hauswirth WW, Molday RS, Wasserman WW, Simpson EM. PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina. Mol Ther Methods Clin Dev. PMID: 27556059. 2016 Aug 10;3:16051. doi: 10.1038/mtm.2016.51. eCollection 2016. N/A
Ying G, Gerstner CD, Frederick JM, Boye SL, Hauswirth WW, Baehr W. Small GTPases Rab8a and Rab11a Are Dispensable for Rhodopsin Transport in Mouse Photoreceptors. PLoS One. PMID: 27529348. 2016 Aug 16;11(8):e0161236. doi: 10.1371/journal.pone.0161236. eCollection 2016. 3.057
Weleber RG, Pennesi ME, Wilson DJ, Kaushal S, Erker LR, Jensen L, McBride MT, Flotte TR, Humphries M, Calcedo R, Hauswirth WW, Chulay JD, Stout JT. Results at 2 Years after Gene Therapy for RPE65-Deficient Leber Congenital Amaurosis and Severe Early-Childhood-Onset Retinal Dystrophy. Ophthalmology. PMID: 27102010. 2016 Jul;123(7):1606-20. doi: 10.1016/j.ophtha.2016.03.003. Epub 2016 Apr 19. 6.75
Boyd RF, Boye SL, Conlon TJ, Erger KE, Sledge DG, Langohr IM, Hauswirth WW, Komáromy AM, Boye SE, Petersen-Jones SM, Bartoe JT. Reduced retinal transduction and enhanced transgene-directed immunogenicity with intravitreal delivery of rAAV following posterior vitrectomy in dogs. Gene Ther. PMID: 27052802. 2016 Jun;23(6):548-56. doi: 10.1038/gt.2016.31. Epub 2016 Apr 7. 3.242
Ye GJ, Budzynski E, Sonnentag P, Nork TM, Miller PE, Sharma AK, Ver Hoeve JN, Smith LM, Arndt T, Calcedo R, Gaskin C, Robinson PM, Knop DR, Hauswirth WW, Chulay JD. Safety and Biodistribution Evaluation in Cynomolgus Macaques of rAAV2tYF-PR1.7-hCNGB3, a Recombinant AAV Vector for Treatment of Achromatopsia. Hum Gene Ther Clin Dev. PMID: 27003753. 2016 Mar;27(1):37-48. doi: 10.1089/humc.2015.164.2.889
Ye GJ, Budzynski E, Sonnentag P, Nork TM, Miller PE, McPherson L, Ver Hoeve JN, Smith LM, Arndt T, Mandapati S, Robinson PM, Calcedo R, Knop DR, Hauswirth WW, Chulay JD. Safety and Biodistribution Evaluation in CNGB3-Deficient Mice of rAAV2tYF-PR1.7-hCNGB3, a Recombinant AAV Vector for Treatment of Achromatopsia. Hum Gene Ther Clin Dev. PMID: 27003752. 2016 Mar;27(1):27-36. doi: 10.1089/humc.2015.163.2.889
Ye GJ, Budzynski E, Sonnentag P, Nork TM, Miller PE, Sharma AK, Ver Hoeve JN, Smith L, Arndt T, Calcedo R, Gaskin C, Robinson P, Knop DR, Hauswirth WW, Chulay JD. Safety and Biodistribution Evaluation in Cynomolgus Macaques of rAAV2tYF-PR1.7-hCNGB3, a Recombinant AAV Vector for Treatment of Achromatopsia. Hum Gene Ther Clin Dev. PMID: 26956923. 2016 Mar 8. [Epub ahead of print]2.889
Ye GJ, Budzynski E, Sonnentag P, Nork TM, Miller PE, McPherson L, Ver Hoeve JN, Smith L, Arndt T, Mandapati S, Robinson P, Calcedo R, Knop DR, Hauswirth WW, Chulay JD. Safety and Biodistribution Evaluation in CNGB3-deficient Mice of rAAV2tYF-PR1.7-hCNGB3, a Recombinant AAV Vector for Treatment of Achromatopsia. Hum Gene Ther Clin Dev. PMID: 26950208. 2016 Mar 7. [Epub ahead of print]2.889
Yan B, Vakulenko M, Min SH, Hauswirth WW, Nirenberg S. Maintaining ocular safety with light exposure, focusing on devices for optogenetic stimulation. Vision Res. PMID: 26882975. 2016 Apr;121:57-71. doi: 10.1016/j.visres.2016.01.006. Epub 2016 Feb 26.1.776
Dinculescu A, Stupay RM, Deng WT, Dyka FM, Min SH, Boye SL, Chiodo VA, Abrahan CE, Zhu P, Li Q, Strettoi E, Novelli E, Nagel-Wolfrum K, Wolfrum U, Smith WC, Hauswirth WW. AAV-Mediated Clarin-1 Expression in the Mouse Retina: Implications for USH3A Gene Therapy. PLoS One. PMID: 26881841. 2016 Feb 16;11(2):e0148874. doi: 10.1371/journal.pone.0148874. eCollection 2016. 3.057
Ghazi NG, Abboud EB, Nowilaty SR, Alkuraya H, Alhommadi A, Cai H, Hou R, Deng WT, Boye SL, Almaghamsi A, Al Saikhan F, Al-Dhibi H, Birch D, Chung C, Colak D, LaVail MM, Vollrath D, Erger K, Wang W, Conlon T, Zhang K, Hauswirth W, Alkuraya FS. Treatment of retinitis pigmentosa due to MERTK mutations by ocular subretinal injection of adeno-associated virus gene vector: results of a phase I trial. Hum Genet. PMID: 26825853. 2016 Mar;135(3):327-43. doi: 10.1007/s00439-016-1637-y. Epub 2016 Jan 29.5.138
Jara JH, Stanford MJ, Zhu Y, Tu M, Hauswirth WW, Bohn MC, DeVries SH, Özdinler PH. Healthy and diseased corticospinal motor neurons are selectively transduced upon direct AAV2-2 injection into the motor cortex. Gene Ther. PMID: 26704722. 2016 Mar;23(3):272-82. doi: 10.1038/gt.2015.112. Epub 2016 Jan 21. 3.242
Ye GJ, Budzynski E, Sonnentag P, Nork TM, Sheibani N, Gurel Z, Boye SL, Peterson JJ, Boye SE, Hauswirth WW, Chulay JD. Cone-Specific Promoters for Gene Therapy of Achromatopsia and Other Retinal Diseases. Hum Gene Ther. PMID: 26603570. 2016 Jan;27(1):72-82. doi: 10.1089/hum.2015.130.4.062
Dinculescu A, Min SH, Dyka FM, Deng WT, Stupay RM, Chiodo V, Smith WC, Hauswirth WW. Pathological Effects of Mutant C1QTNF5 (S163R) Expression in Murine Retinal Pigment Epithelium. Invest Ophthalmol Vis Sci. PMID: 26513502. 2015 Oct;56(11):6971-80. doi: 10.1167/iovs.15-17166. 3.427
Boyd RF, Sledge DG, Boye SL, Boye SE, Hauswirth WW, Komáromy AM, Petersen-Jones SM, Bartoe JT. Photoreceptor-targeted gene delivery using intravitreally administered AAV vectors in dogs. Gene Ther. PMID: 26467396. 2016 Feb;23(2):223-30. doi: 10.1038/gt.2015.96. Epub 2015 Oct 15. Erratum in: Gene Ther. 2016 Apr;23(4):400. 3.242
LaVail MM, Yasumura D, Matthes MT, Yang H, Hauswirth WW, Deng WT, Vollrath D. Gene Therapy for MERTK-Associated Retinal Degenerations. Adv Exp Med Biol. PMID: 26427450. 2016;854:487-93. doi: 10.1007/978-3-319-17121-0_65. 1.953
Lipinski DM, Reid CA, Boye SL, Peterson JJ, Qi X, Boye SE, Boulton ME, Hauswirth WW. Systemic Vascular Transduction by Capsid Mutant Adeno-Associated Virus After Intravenous Injection. Hum Gene Ther. PMID: 26359319. 2015 Nov;26(11):767-76. doi: 10.1089/hum.2015.097. Epub 2015 Sep 29.4.062
Boye SL, Peterson JJ, Choudhury S, Min SH, Ruan Q, McCullough KT, Zhang Z, Olshevskaya EV, Peshenko IV, Hauswirth WW, Ding XQ, Dizhoor AM, Boye SE. Gene Therapy Fully Restores Vision to the All-Cone Nrl(-/-) Gucy2e(-/-) Mouse Model of Leber Congenital Amaurosis-1. Hum Gene Ther. PMID: 26247368. 2015 Sep;26(9):575-92. doi: 10.1089/hum.2015.053. Epub 2015 Aug 6. 4.062
Jiang L, Tam BM, Ying G, Wu S, Hauswirth WW, Frederick JM, Moritz OL, Baehr W. Kinesin family 17 (osmotic avoidance abnormal-3) is dispensable for photoreceptor morphology and function. FASEB J. PMID: 26229057. 2015 Dec;29(12):4866-80. doi: 10.1096/fj.15-275677. Epub 2015 Jul 30.5.299
Banin E, Gootwine E, Obolensky A, Ezra-Elia R, Ejzenberg A, Zelinger L, Honig H, Rosov A, Yamin E, Sharon D, Averbukh E, Hauswirth WW, Ofri R. Gene Augmentation Therapy Restores Retinal Function and Visual Behavior in a Sheep Model of CNGA3 Achromatopsia. Mol Ther. PMID: 26087757. 2015 Sep;23(9):1423-33. doi: 10.1038/mt.2015.114. Epub 2015 Jun 19. 6.938
Deng WT, Dyka FM, Dinculescu A, Li J, Zhu P, Chiodo VA, Boye SL, Conlon TJ, Erger K, Cossette T, Hauswirth WW. Stability and Safety of an AAV Vector for Treating RPGR-ORF15 X-Linked Retinitis Pigmentosa. Hum Gene Ther. PMID: 26076799. 2015 Sep;26(9):593-602. doi: 10.1089/hum.2015.035. Epub 2015 Jul 29. 4.062
Zhong H, Eblimit A, Moayedi Y, Boye SL, Chiodo VA, Chen Y, Li Y, Nichols RM, Hauswirth WW, Chen R, Mardon G. AAV8(Y733F)-mediated gene therapy in a Spata7 knockout mouse model of Leber congenital amaurosis and retinitis pigmentosa. Gene Ther. PMID: 25965394. 2015 Aug;22(8):619-27. doi: 10.1038/gt.2015.42. Epub 2015 May 12. 3.242
Du W, Tao Y, Deng WT, Zhu P, Li J, Dai X, Zhang Y, Shi W, Liu X, Chiodo VA, Ding XQ, Zhao C, Michalakis S, Biel M, Zhang Z, Qu J, Hauswirth WW, Pang JJ. Vitreal delivery of AAV vectored Cnga3 restores cone function in CNGA3-/-/Nrl-/- mice, an all-cone model of CNGA3 achromatopsia. Hum Mol Genet. PMID: 25855802. 2015 Jul 1;24(13):3699-707. doi: 10.1093/hmg/ddv114. Epub 2015 Apr 8. 5.985
Bloom MD, Gibney JM, Heldermon CD. Pigmentation of the Tongue with Lapatinib Treatment in a Patient with Advanced Breast Cancer: A Case Report. Cancer Treat Commun. PMID: 27110490. 2016;7:1-3. No abstract available.N/A
Gilkes JA, Bloom MD, Heldermon CD. Preferred transduction with AAV8 and AAV9 via thalamic administration in the MPS IIIB model: A comparison of four rAAV serotypes. Mol Genet Metab Rep. PMID: 27014573. 2015 Dec 7;6:48-54. doi: 10.1016/j.ymgmr.2015.11.006. eCollection 2016 Mar. 0.74
Gilkes JA, Bloom MD, Heldermon CD. Mucopolysaccharidosis IIIB confers enhanced neonatal intracranial transduction by AAV8 but not by 5, 9 or rh10. Gene Ther. PMID: 26674264. 2016 Mar;23(3):263-71. doi: 10.1038/gt.2015.111. Epub 2015 Dec 16. 3.242
Li X, Heldermon CD, Yao L, Xi L, Jiang H. High resolution functional photoacoustic tomography of breast cancer. Med Phys. PMID: 26328981. 2015 Sep;42(9):5321-8. doi: 10.1118/1.4928598.2.496
Kumar SR, Markusic DM, Biswas M, High KA, Herzog RW. Clinical development of gene therapy: results and lessons from recent successes. Mol Ther Methods Clin Dev. PMID: 27257611 . 2016 May 25;3:16034. doi: 10.1038/mtm.2016.34. eCollection 2016. Review.N/A
Herzog RW. Expanded Opportunities for Methods and Clinical Development. Mol Ther. PMID: 27081714. 2016 Apr;24(4):655-6. doi: 10.1038/mt.2016.44. No abstract available.6.938
Wang X, Terhorst C, Herzog RW. In vivo induction of regulatory T cells for immune tolerance in hemophilia. Cell Immunol. PMID: 26454643. 2016 Mar;301:18-29. doi: 10.1016/j.cellimm.2015.10.001. Epub 2015 Oct 9. Review.2.399
Herzog RW. Hemophilia Gene Therapy: Caught Between a Cure and an Immune Response. Mol Ther. PMID: 26321180. 2015 Sep;23(9):1411-2. doi: 10.1038/mt.2015.135. No abstract available. 6.938
Su J, Zhu L, Sherman A, Wang X, Lin S, Kamesh A, Norikane JH, Streatfield SJ, Herzog RW, Daniell H. Low cost industrial production of coagulation factor IX bioencapsulated in lettuce cells for oral tolerance induction in hemophilia B. Biomaterials. PMID: 26302233. 2015 Nov;70:84-93. doi: 10.1016/j.biomaterials.2015.08.004. Epub 2015 Aug 5. 8.387
Biswas M, Terhorst C, Herzog RW. Treg: tolerance vs immunity. Oncotarget. PMID: 26119156. 2015 Aug 21;6(24):19956-7. No abstract available. 5.008
Xiao Y, Kwon KC, Hoffman BE, Kamesh A, Jones NT, Herzog RW, Daniell H. Low cost delivery of proteins bioencapsulated in plant cells to human non-immune or immune modulatory cells. Biomaterials. PMID: 26706477. 2016 Feb;80:68-79. doi: 10.1016/j.biomaterials.2015.11.051. 8.387
Narayan S, Jaiswal AS, Law BK, Kamal MA, Sharma AK, Hromas RA. Interaction between APC and Fen1 during breast carcinogenesis. DNA Repair (Amst). PMID: 27088617. 2016 May;41:54-62. doi: 10.1016/j.dnarep.2016.04.003. Epub 2016 Apr 7. Review.3.929
Chun C, Wu Y, Lee SH, Williamson EA, Reinert BL, Jaiswal AS, Nickoloff JA, Hromas RA. The homologous recombination component EEPD1 is required for genome stability in response to developmental stress of vertebrate embryogenesis. Cell Cycle. PMID: 26900729. 2016;15(7):957-62. doi: 10.1080/15384101.2016.1151585. 3.952
Wu Y, Lee SH, Williamson EA, Reinert BL, Cho JH, Xia F, Jaiswal AS, Srinivasan G, Patel B, Brantley A, Zhou D, Shao L, Pathak R, Hauer-Jensen M, Singh S, Kong K, Wu X, Kim HS, Beissbarth T, Gaedcke J, Burma S, Nickoloff JA, Hromas RA. EEPD1 Rescues Stressed Replication Forks and Maintains Genome Stability by Promoting End Resection and Homologous Recombination Repair. PLoS Genet. PMID: 26684013. 2015 Dec 18;11(12):e1005675. doi: 10.1371/journal.pgen.1005675. eCollection 2015 Dec.6.661
Kim HS, Kim SK, Hromas R, Lee SH. The SET Domain Is Essential for Metnase Functions in Replication Restart and the 5' End of SS-Overhang Cleavage. PLoS One. PMID: 26437079. 2015 Oct 5;10(10):e0139418. doi: 10.1371/journal.pone.0139418. eCollection 2015. 3.057
Benyoucef A, Palii CG, Wang C, Porter CJ, Chu A, Dai F, Tremblay V, Rakopoulos P, Singh K, Huang S, Pflumio F, Hébert J, Couture JF, Perkins TJ, Ge K, Dilworth FJ, Brand M. UTX inhibition as selective epigenetic therapy against TAL1-driven T-cell acute lymphoblastic leukemia. Genes Dev. PMID: 26944678. 2016 Mar 1;30(5):508-21. doi: 10.1101/gad.276790.115. 10.042
Du Z, Li L, Huang X, Jin J, Huang S, Zhang Q, Tao Q. The epigenetic modifier CHD5 functions as a novel tumor suppressor for renal cell carcinoma and is predominantly inactivated by promoter CpG methylation. Oncotarget. PMID: 26943038. 2016 Apr 19;7(16):21618-30. doi: 10.18632/oncotarget.7822. 5.008
Xu L, Weng J, Huang X, Zeng C, Chen S, Geng S, Yang L, Wu S, Huang S, Du X, Li Y. Persistent donor derived Vδ4 T cell clones may improve survival for recurrent T cell acute lymphoblastic leukemia after HSCT and DLI. Oncotarget. PMID: 27356746. 2016 Jun 23. doi: 10.18632/oncotarget.10260. [Epub ahead of print] 5.008
Rapkin LM, Ahmed K, Dulev S, Li R, Kimura H, Ishov AM, Bazett-Jones DP. The histone chaperone DAXX maintains the structural organization of heterochromatin domains. Epigenetics Chromatin. PMID: 26500702. 2015 Oct 21;8:44. doi: 10.1186/s13072-015-0036-2. eCollection 2015. 4.873
Basak A, Abouelhassan Y, Norwood VM 4th, Bai F, Nguyen MT, Jin S, Huigens RW 3rd. Synthetically Tuning the 2-Position of Halogenated Quinolines: Optimizing Antibacterial and Biofilm Eradication Activities via Alkylation and Reductive Amination Pathways. Chemistry. PMID: 27245927. 2016 Jun 27;22(27):9181-9. doi: 10.1002/chem.201600926. Epub 2016 Jun 1.5.771
Garrison AT, Abouelhassan Y, Norwood VM 4th, Kallifidas D, Bai F, Nguyen MT, Rolfe M, Burch GM,Jin S, Luesch H, Huigens RW 3rd. Structure-Activity Relationships of a Diverse Class of Halogenated Phenazines That Targets Persistent, Antibiotic-Tolerant Bacterial Biofilms and Mycobacterium tuberculosis. J Med Chem. PMID: 27018907. 2016 Apr 28;59(8):3808-25. doi: 10.1021/acs.jmedchem.5b02004. Epub 2016 Apr 6.5.589
Jackson K, Jin S, Fan ZH. Optimization of a miniaturized fluid array device for cell-free protein synthesis. Biotechnol Bioeng. PMID: 26037852. 2015 Dec;112(12):2459-67. doi: 10.1002/bit.25668. Epub 2015 Jul 14.4.243
Abouelhassan Y, Garrison AT, Bai F, Norwood VM 4th, Nguyen MT, Jin S, Huigens RW 3rd. A Phytochemical-Halogenated Quinoline Combination Therapy Strategy for the Treatment of Pathogenic Bacteria. ChemMedChem. PMID: 25982664. 2015 Jul;10(7):1157-62. doi: 10.1002/cmdc.201500179. Epub 2015 May 15.2.98
Chen G, Zhao Q, Zhu F, Chen R, Jin Y, Liu C, Pan X, Jin S, Wu W, Cheng Z. Oligoribonuclease is required for the type III secretion system and pathogenesis of Pseudomonas aeruginosa. Microbiol Res. PMID: 27296966. 2016 Jul-Aug;188-189:90-6. doi: 10.1016/j.micres.2016.05.002. Epub 2016 May 4.2.723
Lee JH, Kim YJ, Shin HS, Lee HS, Jin S, Ha UH. Identification of D-amino acid dehydrogenase as an upstream regulator of the autoinduction of a putative acyltransferase in Corynebacterium glutamicum. J Microbiol. PMID: 27225460. 2016 Jun;54(6):432-9. doi: 10.1007/s12275-016-6046-3. Epub 2016 May 27.1.621
Tan H, Zhang L, Weng Y, Chen R, Zhu F, Jin Y, Cheng Z, Jin S, Wu W. PA3297 Counteracts Antimicrobial Effects of Azithromycin in Pseudomonas aeruginosa. Front Microbiol. PMID: 27014238. 2016 Mar 16;7:317. doi: 10.3389/fmicb.2016.00317. eCollection 2016. 4.165
Lee Y, Kim YJ, Lee JH, Yu HE, Lee K, Jin S, Ha UH. TatC-dependent translocation of pyoverdine is responsible for the microbial growth suppression. J Microbiol. PMID: 26832668. 2016 Feb;54(2):122-30. doi: 10.1007/s12275-016-5542-9. Epub 2016 Feb 2.1.621
Guo Q, Wei Y, Xia B, Jin Y, Liu C, Pan X, Shi J, Zhu F, Li J, Qian L, Liu X, Cheng Z, Jin S, Lin J, Wu W. Identification of a small molecule that simultaneously suppresses virulence and antibiotic resistance of Pseudomonas aeruginosa. Sci Rep. PMID: 26751736. 2016 Jan 11;6:19141. doi: 10.1038/srep19141. 5.228
Jin Y, Jin S, Wu W. Regulation of bacterial gene expression by ribosome stalling and rescuing. Curr Genet. PMID: 26612270. 2016 May;62(2):309-12. doi: 10.1007/s00294-015-0545-3. Epub 2015 Nov 26. Review.3.385
Shi J, Jin Y, Bian T, Li K, Sun Z, Cheng Z, Jin S, Wu W. SuhB is a novel ribosome associated protein that regulates expression of MexXY by modulating ribosome stalling in Pseudomonas aeruginosa. Mol Microbiol. PMID: 26179141. 2015 Oct;98(2):370-83. doi: 10.1111/mmi.13126. Epub 2015 Aug 3.3.761
Jia J, Bai F, Jin Y, Santostefano KE, Ha UH, Wu D, Wu W, Terada N, Jin S. Efficient Gene Editing in Pluripotent Stem Cells by Bacterial Injection of Transcription Activator-Like Effector Nuclease Proteins. Stem Cells Transl Med. PMID: 26062981. 2015 Aug;4(8):913-26. doi: 10.5966/sctm.2015-0030. Epub 2015 Jun 10. 4.247
Azarian T, Maraqa NF, Cook RL, Johnson JA, Bailey C, Wheeler S, Nolan D, Rathore MH, Morris JG, Salemi M. Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Neonatal Intensive Care Unit. PLoS One. PMID: 27732618. 2016 Oct 12;11(10):e0164397. doi: 10.1371/journal.pone.0164397. 3.057
Daneshjou R, Cavallari LH, Weeke PE, Karczewski KJ, Drozda K, Perera MA, Johnson JA, Klein TE, Bustamante CD, Roden DM, Shaffer C, Denny JC, Zehnder JL, Altman RB. Population-specific single-nucleotide polymorphism confers increased risk of venous thromboembolism in African Americans. Mol Genet Genomic Med. PMID: 27652279. 2016 Jun 21;4(5):513-20. doi: 10.1002/mgg3.226. eCollection 2016 Sep. N/A
Gharaibeh KA, Turner ST, Hamadah AM, Chapman AB, Cooper-Dehoff RM, Johnson JA, Gums JG, Bailey KR, Schwartz GL. Comparison of Blood Pressure Control Rates Among Recommended Drug Selection Strategies for Initial Therapy of Hypertension. Am J Hypertens. PMID: 27365079. 2016 Oct;29(10):1186-94. doi: 10.1093/ajh/hpw067. Epub 2016 Jun 30.3.182
Shahin MH, Johnson JA. Mechanisms and pharmacogenetic signals underlying thiazide diuretics blood pressure response. Curr Opin Pharmacol. PMID: 26874237. 2016 Apr;27:31-7. doi: 10.1016/j.coph.2016.01.005. Epub 2016 Feb 10. Review.4.769
Rotroff DM, Shahin MH, Gurley SB, Zhu H, Motsinger-Reif A, Meisner M, Beitelshees AL, Fiehn O, Johnson JA, Elbadawi-Sidhu M, Frye RF, Gong Y, Weng L, Cooper-DeHoff RM, Kaddurah-Daouk R. Pharmacometabolomic Assessments of Atenolol and Hydrochlorothiazide Treatment Reveal Novel Drug Response Phenotypes. CPT Pharmacometrics Syst Pharmacol. PMID: 26783503. 2015 Nov;4(11):669-79. doi: 10.1002/psp4.12017. Epub 2015 Oct 29. 3.02
Weitzel KW, Alexander M, Bernhardt BA, Calman N, Carey DJ, Cavallari LH, Field JR, Hauser D, Junkins HA, Levin PA, Levy K, Madden EB, Manolio TA, Odgis J, Orlando LA, Pyeritz R, Wu RR, Shuldiner AR, Bottinger EP, Denny JC, Dexter PR, Flockhart DA, Horowitz CR, Johnson JA, Kimmel SE, Levy MA, Pollin TI, Ginsburg GS; IGNITE Network. The IGNITE network: a model for genomic medicine implementation and research. BMC Med Genomics. PMID: 26729011. 2016 Jan 5;9:1. doi: 10.1186/s12920-015-0162-5. 2.726
Gong Y, Wang Z, Beitelshees AL, McDonough CW, Langaee TY, Hall K, Schmidt SO, Curry RW Jr, Gums JG, Bailey KR, Boerwinkle E, Chapman AB, Turner ST, Cooper-DeHoff RM, Johnson JA. Pharmacogenomic Genome-Wide Meta-Analysis of Blood Pressure Response to β-Blockers in Hypertensive African Americans. Hypertension. PMID: 26729753. 2016 Mar;67(3):556-63. doi: 10.1161/HYPERTENSIONAHA.115.06345. Epub 2016 Jan 4.6.35
Cooper-DeHoff RM, Johnson JA. Hypertension pharmacogenomics: in search of personalized treatment approaches. Nat Rev Nephrol. PMID: 26592190. 2016 Feb;12(2):110-22. doi: 10.1038/nrneph.2015.176. Epub 2015 Nov 23. Review.9.463
Biel NM, Santostefano KE, DiVita BB, El Rouby N, Carrasquilla SD, Simmons C, Nakanishi M, Cooper-DeHoff RM, Johnson JA, Terada N. Vascular Smooth Muscle Cells From Hypertensive Patient-Derived Induced Pluripotent Stem Cells to Advance Hypertension Pharmacogenomics. Stem Cells Transl Med. PMID: 26494780. 2015 Dec;4(12):1380-90. doi: 10.5966/sctm.2015-0126. Epub 2015 Oct 22.4.247
Johnson JA, Weitzel KW. Advancing Pharmacogenomics as a Component of Precision Medicine: How, Where, and Who? Clin Pharmacol Ther. PMID: 26440500. 2016 Feb;99(2):154-6. doi: 10.1002/cpt.273. Epub 2015 Nov 9.7.268
Parra EJ, Botton MR, Perini JA, Krithika S, Bourgeois S, Johnson TA, Tsunoda T, Pirmohamed M, Wadelius M, Limdi NA, Cavallari LH, Burmester JK, Rettie AE, Klein TE, Johnson JA, Hutz MH, Suarez-Kurtz G. Genome-wide association study of warfarin maintenance dose in a Brazilian sample. Pharmacogenomics. PMID: 26265036. 2015;16(11):1253-63. doi: 10.2217/PGS.15.73. Epub 2015 Aug 12. 2.71
Jia H, Orbovic V, Jones JB, Wang N. Modification of the PthA4 effector binding elements in Type I CsLOB1 promoter using Cas9/sgRNA to produce transgenic Duncan grapefruit alleviating XccΔpthA4:dCsLOB1.3 infection. Plant Biotechnol J. PMID: 27071672. 2016 May;14(5):1291-301. doi: 10.1111/pbi.12495. Epub 2015 Nov 2. 6.09
Gochez AM, Shantharaj D, Potnis N, Zhou X, Minsavage GV, White FF, Wang N, Hurlbert JC, Jones JB. Molecular characterization of XopAG Effector-AvrGf2 from Xanthomonas fuscans subsp. aurantifolii in grapefruit. Mol Plant Pathol. PMID: 27030294. 2016 Mar 31. doi: 10.1111/mpp.12408. [Epub ahead of print]4.335
Hu Y, Duan S, Zhang Y, Shantharaj D, Jones JB, Wang N. Temporal Transcription Profiling of Sweet Orange in Response to PthA4-Mediated Xanthomonas citri subsp. citri Infection. Phytopathology. PMID: 26780431. 2016 May;106(5):442-51. doi: 10.1094/PHYTO-09-15-0201-R. Epub 2016 Mar 31.3.011
Cowles KN, Willis DK, Engel TN, Jones JB, Barak JD. Diguanylate Cyclases AdrA and STM1987 Regulate Salmonella enterica Exopolysaccharide Production during Plant Colonization in an Environment-Dependent Manner. Appl Environ Microbiol. PMID: 26655751. 2015 Dec 11;82(4):1237-48. doi: 10.1128/AEM.03475-15. 3.823
Potnis N, Colee J, Jones JB, Barak JD. Plant pathogen-induced water-soaking promotes Salmonella enterica growth on tomato leaves. Appl Environ Microbiol. PMID: 26386057. 2015 Dec;81(23):8126-34. doi: 10.1128/AEM.01926-15. Epub 2015 Sep 18.3.823
Kuzmanović N, Puławska J, Prokić A, Ivanović M, Zlatković N, Jones JB, Obradović A. Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum. Syst Appl Microbiol. PMID: 26117193. 2015 Sep;38(6):373-8. doi: 10.1016/j.syapm.2015.06.001. Epub 2015 Jun 11.3.691
Zhang Y, Jalan N, Zhou X, Goss E, Jones JB, Setubal JC, Deng X, Wang N. Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas. ISME J. PMID: 25689023. 2015 Oct;9(10):2128-38. doi: 10.1038/ismej.2015.15. Epub 2015 Feb 17. 9.328
Potnis N, Timilsina S, Strayer A, Shantharaj D, Barak JD, Paret ML, Vallad GE, Jones JB. Bacterial spot of tomato and pepper: diverse Xanthomonas species with a wide variety of virulence factors posing a worldwide challenge. Mol Plant Pathol. PMID: 25649754. 2015 Dec;16(9):907-20. doi: 10.1111/mpp.12244. Epub 2015 Apr 29.4.335
Gabr H, Kahveci T. Signal reachability facilitates characterization of probabilistic signaling networks. BMC Bioinformatics. PMID: 26679404. 2015;16 Suppl 17:S6. doi: 10.1186/1471-2105-16-S17-S6. Epub 2015 Dec 7. 2.435
Gabr H, Rivera-Mulia JC, Gilbert DM, Kahveci T. Computing interaction probabilities in signaling networks. EURASIP J Bioinform Syst Biol. PMID: 26587014. 2015 Nov 11;2015(1):10. eCollection 2015 Dec. 1.9
Hasan MM, Kahveci T. Indexing a protein-protein interaction network expedites network alignment. BMC Bioinformatics. PMID: 26453444. 2015 Oct 9;16:326. doi: 10.1186/s12859-015-0756-0. 2.435
Rivera-Mulia JC, Buckley Q, Sasaki T, Zimmerman J, Didier RA, Nazor K, Loring JF, Lian Z, Weissman S, Robins AJ, Schulz TC, Menendez L, Kulik MJ, Dalton S, Gabr H, Kahveci T, Gilbert DM. Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells. Genome Res. PMID: 26055160. 2015 Aug;25(8):1091-103. doi: 10.1101/gr.187989.114. Epub 2015 Jun 8. 11.351
Pellé KG, Jiang RH, Mantel PY, Xiao YP, Hjelmqvist D, Gallego-Lopez GM, O T Lau A, Kang BH, Allred DR, Marti M. Shared elements of host-targeting pathways among apicomplexan parasites of differing lifestyles. Cell Microbiol. PMID: 25996544. 2015 Nov;17(11):1618-39. doi: 10.1111/cmi.12460. Epub 2015 Jul 7.4.46
Connolly AM, Florence JM, Zaidman CM, Golumbek PT, Mendell JR, Flanigan KM, Karachunski PI, Day JW, McDonald CM, Darras BT, Kang PB, Siener CA, Gadeken RK, Anand P, Schierbecker JR, Malkus EC, Lowes LP, Alfano LN, Johnson L, Nicorici A, Kelecic JM, Quigley J, Pasternak AE, Miller JP; MDA-DMD Clinical Research Network. Clinical trial readiness in non-ambulatory boys and men with duchenne muscular dystrophy: MDA-DMD network follow-up. Muscle Nerve. PMID: 26930423. 2016 Oct;54(4):681-9. doi: 10.1002/mus.25089. Epub 2016 May 10.2.713
Cho KA, Kang PB. PLIN2 inhibits insulin-induced glucose uptake in myoblasts through the activation of the NLRP3 inflammasome. Int J Mol Med. PMID: 26166692. 2015 Sep;36(3):839-44. doi: 10.3892/ijmm.2015.2276. Epub 2015 Jul 8.2.348
Kang PB, Griggs RC. Advances in Muscular Dystrophies. JAMA Neurol. PMID: 25985443. 2015 Jul;72(7):741-2. doi: 10.1001/jamaneurol.2014.4621. Review. No abstract available.8.23
Massengill MT, Ashraf HM, Chowdhury RR, Chrzanowski SM, Kar J, Warren SA, Walter GA, Zeng H, Kang BH, Anderson RH, Moss RL, Kasahara H. Acute heart failure with cardiomyocyte atrophy induced in adult mice by ablation of cardiac myosin light chain kinase. Cardiovasc Res. PMID: 27025239. 2016 Jul 1;111(1):34-43. doi: 10.1093/cvr/cvw069. Epub 2016 Mar 29.5.465
Pradhan L, Gopal S, Li S, Ashur S, Suryanarayanan S, Kasahara H, Nam HJ. Intermolecular Interactions of Cardiac Transcription Factors NKX2.5 and TBX5. Biochemistry. PMID: 26926761. 2016 Mar 29;55(12):1702-10. doi: 10.1021/acs.biochem.6b00171. Epub 2016 Mar 9.2.876
Chowdhury R, Ashraf H, Melanson M, Tanada Y, Nguyen M, Silberbach M, Wakimoto H, Benson DW, Anderson RH, Kasahara H. Mouse Model of Human Congenital Heart Disease: Progressive Atrioventricular Block Induced by a Heterozygous Nkx2-5 Homeodomain Missense Mutation. Circ Arrhythm Electrophysiol. PMID: 26226998. 2015 Oct;8(5):1255-64. doi: 10.1161/CIRCEP.115.002720. Epub 2015 Jul 30. 4.428
Cho S, Epstein SW, Mitter K, Hamilton CA, Plotkin D, Mitter C, Kawahara AY. Preserving and vouchering butterflies and moths for large-scale museum-based molecular research. PeerJ. PMID: 27366654. 2016 Jun 22;4:e2160. doi: 10.7717/peerj.2160. eCollection 2016. 2.183
Ahmed MZ, Breinholt JW, Kawahara AY. Evidence for common horizontal transmission of Wolbachia among butterflies and moths. BMC Evol Biol. PMID: 27233666. 2016 May 27;16(1):118. doi: 10.1186/s12862-016-0660-x. 3.406
Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, Kawahara AY, Letsch H, Mayer C, McKenna DD, Meusemann K, Niehuis O, Peters RS, Wiegmann BM, Yeates DK, von Reumont BM, Stamatakis A, Misof B. INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution". Science. PMID: 26228138. 2015 Jul 31;349(6247):487. doi: 10.1126/science.aaa7136. 34.661
Ahmed MZ, Araujo-Jnr EV, Welch JJ, Kawahara AY. Wolbachia in butterflies and moths: geographic structure in infection frequency. Front Zool. PMID: 26180539. 2015 Jul 16;12:16. doi: 10.1186/s12983-015-0107-z. eCollection 2015. 3.042
Swaddle JP, Francis CD, Barber JR, Cooper CB, Kyba CC, Dominoni DM, Shannon G, Aschehoug E, Goodwin SE, Kawahara AY, Luther D, Spoelstra K, Voss M, Longcore T. A framework to assess evolutionary responses to anthropogenic light and sound. Trends Ecol Evol. PMID: 26169593. 2015 Sep;30(9):550-60. doi: 10.1016/j.tree.2015.06.009. Epub 2015 Jul 10. Review.16.735
Khodayari N, Mohammed KA, Lee H, Kaye F, Nasreen N. MicroRNA-302b targets Mcl-1 and inhibits cell proliferation and induces apoptosis in malignant pleural mesothelioma cells. Am J Cancer Res. PMID: 27725905. 2016 Sep 1;6(9):1996-2009. 3.425
Chen Z, Li JL, Lin S, Cao C, Gimbrone NT, Yang R, Fu DA, Carper MB, Haura EB, Schabath MB, Lu J, Amelio AL, Cress WD, Kaye FJ, Wu L. cAMP/CREB-regulated LINC00473 marks LKB1-inactivated lung cancer and mediates tumor growth. J Clin Invest. PMID: 27140397. 2016 Jun 1;126(6):2267-79. doi: 10.1172/JCI85250. Epub 2016 May 3. 12.575
Chen L, Engel BE, Welsh EA, Yoder SJ, Brantley SG, Chen DT, Beg AA, Cao C, Kaye FJ, Haura EB, Schabath MB, Cress WD. A Sensitive NanoString-Based Assay to Score STK11 (LKB1) Pathway Disruption in Lung Adenocarcinoma. J Thorac Oncol. PMID: 26917230. 2016 Jun;11(6):838-49. doi: 10.1016/j.jtho.2016.02.009. Epub 2016 Feb 23. 5.04
Kennedy WR, Werning JW, Kaye FJ, Mendenhall WM. Treatment of ameloblastoma and ameloblastic carcinoma with radiotherapy. Eur Arch Otorhinolaryngol. PMID: 26796877. 2016 Oct;273(10):3293-7. doi: 10.1007/s00405-016-3899-3. Epub 2016 Jan 21.1.627
François RA, Maeng K, Nawab A, Kaye FJ, Hochwald SN, Zajac-Kaye M. Targeting Focal Adhesion Kinase and Resistance to mTOR Inhibition in Pancreatic Neuroendocrine Tumors. J Natl Cancer Inst. PMID: 25971297. 2015 May 12;107(8). pii: djv123. doi: 10.1093/jnci/djv123. Print 2015 Aug. 13.757
Aryal SK, Crow WT, McSorley R, Giblin-Davis RM, Rowland DL, Poudel B, Kenworthy KE. Effects of Infection by Belonolaimus longicaudatus on Rooting Dynamics among St. Augustinegrass and Bermudagrass Genotypes. J Nematol. PMID: 26941461. 2015 Dec;47(4):322-31. 1.333
Liu J, Bolland J, Dick D, Mustanski B, Kertes DA. Effect of Environmental Risk and Externalizing Comorbidity on Internalizing Problems Among Economically Disadvantaged African American Youth. J Res Adolesc. PMID: 27594775. 2016 Sep;26(3):552-566. Epub 2015 Jul 8.2.48
Kertes DA, Kamin HS, Hughes DA, Rodney NC, Bhatt S, Mulligan CJ. Prenatal Maternal Stress Predicts Methylation of Genes Regulating the Hypothalamic-Pituitary-Adrenocortical System in Mothers and Newborns in the Democratic Republic of Congo. Child Dev. PMID: 26822443. 2016 Jan-Feb;87(1):61-72. doi: 10.1111/cdev.12487.3.791
Goyal N, Aliev F, Latendresse SJ, Kertes DA, Bolland JM, Byck GR, Mustanski B, Salvatore JE, Dick DM. Genes involved in stress response and alcohol use among high-risk African American youth. Subst Abus. PMID: 26751645. 2016 Jul-Sep;37(3):450-458.2.576
Wei X, Song X, Dong D, Keyhani NO, Yao L, Zang X, Dong L, Gu Z, Fu D, Liu X, Qiu J, Guan X. Efficient production of Aschersonia placenta protoplasts for transformation using optimization algorithms. Can J Microbiol. PMID: 27192440. 2016 Jul;62(7):579-87. doi: 10.1139/cjm-2015-0770. Epub 2016 Mar 11.1.335
Ortiz-Urquiza A, Keyhani NO. Molecular Genetics of Beauveria bassiana Infection of Insects. Adv Genet. PMID: 27131326. 2016;94:165-249. doi: 10.1016/bs.adgen.2015.11.003. Epub 2016 Feb 11.3.933
Zhou Y, Keyhani NO, Zhang Y, Luo Z, Fan Y, Li Y, Zhou Q, Chen J, Pei Y. Dissection of the contributions of cyclophilin genes to development and virulence in a fungal insect pathogen. Environ Microbiol. PMID: 27130487. 2016 Apr 30. doi: 10.1111/1462-2920.13339. [Epub ahead of print]5.932
Ascunce MS, Huguet-Tapia JC, Braun EL, Ortiz-Urquiza A, Keyhani NO, Goss EM. Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA. Genom Data. PMID: 26981361. 2015 Nov 23;7:60-1. doi: 10.1016/j.gdata.2015.11.019. eCollection 2016 Mar. 0.52
Huang Z, Hao Y, Gao T, Huang Y, Ren S, Keyhani NO. The Ifchit1 chitinase gene acts as a critical virulence factor in the insect pathogenic fungus Isaria fumosorosea. Appl Microbiol Biotechnol. PMID: 26910039. 2016 Jun;100(12):5491-503. doi: 10.1007/s00253-016-7308-z. Epub 2016 Feb 24.3.376
Huang S, He Z, Zhang S, Keyhani NO, Song Y, Yang Z, Jiang Y, Zhang W, Pei Y, Zhang Y. Interplay between calcineurin and the Slt2 MAP-kinase in mediating cell wall integrity, conidiation and virulence in the insect fungal pathogen Beauveria bassiana. Fungal Genet Biol. PMID: 26319315. 2015 Oct;83:78-91. doi: 10.1016/j.fgb.2015.08.009. Epub 2015 Aug 28.2.933
He Z, Zhang S, Keyhani NO, Song Y, Huang S, Pei Y, Zhang Y. A novel mitochondrial membrane protein, Ohmm, limits fungal oxidative stress resistance and virulence in the insect fungal pathogen Beauveria bassiana. Environ Microbiol. PMID: 25403093. 2015 Nov;17(11):4213-38. doi: 10.1111/1462-2920.12713. Epub 2014 Dec 27.5.932
Yuniati L, van der Meer LT, Tijchon E, van Ingen Schenau D, van Emst L, Levers M, Palit SA, Rodenbach C, Poelmans G, Hoogerbrugge PM, Shan J, Kilberg MS, Scheijen B, van Leeuwen FN. Tumor suppressor BTG1 promotes PRMT1-mediated ATF4 function in response to cellular stress. Oncotarget. PMID: 26657730. 2016 Jan 19;7(3):3128-43. doi: 10.18632/oncotarget.6519. 5.008
Palmer EE, Hayner J, Sachdev R, Cardamone M, Kandula T, Morris P, Dias KR, Tao J, Miller D, Zhu Y, Macintosh R, Dinger ME, Cowley MJ, Buckley MF, Roscioli T, Bye A, Kilberg MS, Kirk EP. Asparagine Synthetase Deficiency causes reduced proliferation of cells under conditions of limited asparagine. Mol Genet Metab. PMID: 26318253. 2015 Nov;116(3):178-86. doi: 10.1016/j.ymgme.2015.08.007. Epub 2015 Aug 14.3.093
Thinschmidt JS, Colon-Perez LM, Febo M, Caballero S, King MA, White FA, Grant MB. Depressed basal hypothalamic neuronal activity in type-1 diabetic mice is correlated with proinflammatory secretion of HMBG1. Neurosci Lett. PMID: 26777426. 2016 Feb 26;615:21-7. doi: 10.1016/j.neulet.2016.01.014. Epub 2016 Jan 14.2.107
Bechard AR, Cacodcar N, King MA, Lewis MH. How does environmental enrichment reduce repetitive motor behaviors? Neuronal activation and dendritic morphology in the indirect basal ganglia pathway of a mouse model. Behav Brain Res. PMID: 26620495. 2016 Feb 15;299:122-31. doi: 10.1016/j.bbr.2015.11.029. Epub 2015 Nov 24.3.002
Thinschmidt JS, King MA, Korah M, Perez PD, Febo M, Miyan J, Grant MB. Central neural activation following contact sensitivity peripheral immune challenge: evidence of brain-immune regulation through C fibres. Immunology. PMID: 25967648. 2015 Oct;146(2):206-16. doi: 10.1111/imm.12479. Epub 2015 Aug 24. 4.078
de Almeida Filho JE, Guimarães JF, E Silva FF, de Resende MD, Muñoz P, Kirst M, Resende MF Jr. The contribution of dominance to phenotype prediction in a pine breeding and simulated population. Heredity (Edinb). PMID: 27118156. 2016 Jul;117(1):33-41. doi: 10.1038/hdy.2016.23. Epub 2016 Apr 27. 3.801
Ramos SL, Dequigiovanni G, Sebbenn AM, Lopes MT, Kageyama PY, de Macêdo JL, Kirst M, Veasey EA. Spatial genetic structure, genetic diversity and pollen dispersal in a harvested population of Astrocaryum aculeatum in the Brazilian Amazon. BMC Genet. PMID: 27108235. 2016 Apr 23;17(1):63. doi: 10.1186/s12863-016-0371-8. 2.152
Ribeiro CL, Silva CM, Drost DR, Novaes E, Novaes CR, Dervinis C, Kirst M. Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus. BMC Plant Biol. PMID: 26983547. 2016 Mar 16;16:66. doi: 10.1186/s12870-016-0753-0. 3.631
Stees JR, Hossain MA, Sunose T, Kudo Y, Pardo CE, Nabilsi NH, Darst RP, Poudyal R, Igarashi K, Huang S, Kladde MP, Bungert J. High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation. Mol Cell Biol. PMID: 26503787. 2015 Oct 26;36(2):238-50. doi: 10.1128/MCB.00723-15. 4.427
Folta KM, Klee HJ. Sensory sacrifices when we mass-produce mass produce. Hortic Res. PMID: 27602229. 2016 Jul 13;3:16032. doi: 10.1038/hortres.2016.32. eCollection 2016. Review. 4.09
Xie Q, Liu Z, Meir S, Rogachev I, Aharoni A, Klee HJ, Galili G. Altered metabolite accumulation in tomato fruits by co-expressing a feedback-insensitive AroG and the PhODO1 MYB-type transcription factor. Plant Biotechnol J. PMID: 27185473. 2016 May 17. doi: 10.1111/pbi.12583. [Epub ahead of print] 6.09
Kamiyoshihara Y, Tieman DM, Klee HJ. nalyses of Plant UDP-Dependent Glycosyltransferases to Identify Their Volatile Substrates Using Recombinant Proteins. Methods Mol Biol. PMID: 26577791. 2016;1363:199-207. doi: 10.1007/978-1-4939-3115-6_16.1.17
Giuseppe PO, Santos ML, Sousa SM, Koch KE, Yunes JA, Aparicio R, Murakami MT. A comparative structural analysis reveals distinctive features of co-factor binding and substrate specificity in plant aldo-keto reductases. Biochem Biophys Res Commun. PMID: 27154221. 2016 Jun 10;474(4):696-701. doi: 10.1016/j.bbrc.2016.05.011. Epub 2016 May 3.2.371
Sosso D, Luo D, Li QB, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB. Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport. Nat Genet. PMID: 26523777. 2015 Dec;47(12):1489-93. doi: 10.1038/ng.3422. Epub 2015 Nov 2.31.616
Guan JC, Koch KE. A time and a place for sugar in your ears. Nat Biotechnol. PMID: 26252140. 2015 Aug;33(8):827-8. doi: 10.1038/nbt.3315. No abstract available.43.113
Korithoski B, Kolaczkowski O, Mukherjee K, Kola R, Earl C, Kolaczkowski B. Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication. PLoS One. PMID: 26356745. 2015 Sep 10;10(9):e0137276. doi: 10.1371/journal.pone.0137276. eCollection 2015. 3.057
Laszlo GS, Harrington KH, Gudgeon CJ, Beddoe ME, Fitzgibbon MP, Ries RE, Lamba JK, McIntosh MW, Meshinchi S, Walter RB. Expression and functional characterization of CD33 transcript variants in human acute myeloid leukemia. Oncotarget. PMID: 27248327. 2016 May 27. doi: 10.18632/oncotarget.9674. [Epub ahead of print] 5.008
Fridley BL, Ghosh TM, Wang A, Raghavan R, Dai J, Goode EL, Lamba JK. Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence. Front Genet. PMID: 27047539 . 2016 Mar 22;7:37. doi: 10.3389/fgene.2016.00037. eCollection 2016.3.92
Bhise NS, Chauhan L, Shin M, Cao X, Pounds S, Lamba V, Lamba JK. MicroRNA-mRNA Pairs Associated with Outcome in AML: From In Vitro Cell-Based Studies to AML Patients. Front Pharmacol. PMID: 26858643. 2016 Jan 28;6:324. doi: 10.3389/fphar.2015.00324. eCollection 2015. 4.418
Ghodke-Puranik Y, Puranik AS, Shintre P, Joshi K, Patwardhan B, Lamba J, Niewold TB, Chopra A. Folate metabolic pathway single nucleotide polymorphisms: a predictive pharmacogenetic marker of methotrexate response in Indian (Asian) patients with rheumatoid arthritis. Pharmacogenomics. PMID: 26616421. 2015 Dec;16(18):2019-34. doi: 10.2217/pgs.15.145. Epub 2015 Nov 30.2.71
Lamba JK, Pounds S, Cao X, Crews KR, Cogle CR, Bhise N, Raimondi SC, Downing JR, Baker SD, Ribeiro RC, Rubnitz JE. Clinical significance of in vivo cytarabine-induced gene expression signature in AML. Leuk Lymphoma. PMID: 26366682. 2016;57(4):909-20. doi: 10.3109/10428194.2015.1086918. Epub 2015 Oct 16.3.093
Dotson VM, Hsu FC, Langaee TY, McDonough CW, King AC, Cohen RA, Newman AB, Kritchevsky SB, Myers V, Manini TM, Pahor M; LIFE STUDY GROUP. Genetic Moderators of the Impact of Physical Activity on Depressive Symptoms. J Frailty Aging. PMID: 26980363. 2016;5(1):6-14. doi: 10.14283/jfa.2016.76. N/A
Chang SW, Gong Y, McDonough CW, Langaee TY, Nasiri Kenari N, Beitelshees AL, Gums JG, Chapman AB, Turner ST, Johnson JA, Cooper-DeHoff RM. Melatonin Pathway and Atenolol-Related Glucose Dysregulation: Is There a Correlation? Clin Transl Sci. PMID: 26946962. 2016 Apr;9(2):114-22. doi: 10.1111/cts.12389. Epub 2016 Mar 7. 1.052
Zhu HJ, Langaee TY, Gong Y, Wang X, Pepine CJ, Cooper-DeHoff RM, Johnson JA, Markowitz JS. CES1P1 variant -816A>C is not associated with hepatic carboxylesterase 1 expression and activity or antihypertensive effect of trandolapril. Eur J Clin Pharmacol. PMID: 26915813. 2016 Jun;72(6):681-7. doi: 10.1007/s00228-016-2029-x. Epub 2016 Feb 26.2.71
Jahn SC, Solayman MH, Lorenzo RJ, Langaee T, Stacpoole PW, James MO. GSTZ1 expression and chloride concentrations modulate sensitivity of cancer cells to dichloroacetate. Biochim Biophys Acta. PMID: 26850694. 2016 Jun;1860(6):1202-10. doi: 10.1016/j.bbagen.2016.01.024. Epub 2016 Feb 2.5.34
Solayman MH, Langaee T, Patel A, El-Wakeel L, El-Hamamsy M, Badary O, Johnson JA. Identification of Suitable Endogenous Normalizers for qRT-PCR Analysis of Plasma microRNA Expression in Essential Hypertension. Mol Biotechnol. PMID: 26798072. 2016 Mar;58(3):179-87. doi: 10.1007/s12033-015-9912-z.1.752
Khalil BM, Shahin MH, Solayman MH, Langaee T, Schaalan MF, Gong Y, Hammad LN, Al-Mesallamy HO, Hamdy NM, El-Hammady WA, Johnson JA. Genetic and Nongenetic Factors Affecting Clopidogrel Response in the Egyptian Population. Clin Transl Sci. PMID: 26757134. 2016 Feb;9(1):23-8. doi: 10.1111/cts.12383. Epub 2016 Jan 12. 1.052
Hamadeh IS, Shahin MH, Lima SM, Oliveira F, Wilson L, Khalifa SI, Langaee TY, Cooper-DeHoff RM, Cavallari LH, Johnson JA. Impact of GGCX, STX1B and FPGS Polymorphisms on Warfarin Dose Requirements in European-Americans and Egyptians. Clin Transl Sci. PMID: 26751406. 2016 Feb;9(1):36-42. doi: 10.1111/cts.12385. Epub 2016 Jan 19.1.052
Gong Y, Wang Z, Beitelshees AL, McDonough CW, Langaee TY, Hall K, Schmidt SO, Curry RW Jr, Gums JG, Bailey KR, Boerwinkle E, Chapman AB, Turner ST, Cooper-DeHoff RM, Johnson JA. Pharmacogenomic Genome-Wide Meta-Analysis of Blood Pressure Response to β-Blockers in Hypertensive African Americans. Hypertension. PMID: 26729753. 2016 Mar;67(3):556-63. doi: 10.1161/HYPERTENSIONAHA.115.06345. Epub 2016 Jan 4.6.35
Gruss LF, Langaee T, Keil A. The role of the COMT val158met polymorphism in mediating aversive learning in visual cortex. Neuroimage. PMID: 26549298. 2016 Jan 15;125:633-42. doi: 10.1016/j.neuroimage.2015.11.003. Epub 2015 Nov 5.5.463
Gong Y, McDonough CW, Beitelshees AL, El Rouby N, Hiltunen TP, O'Connell JR, Padmanabhan S, Langaee TY, Hall K, Schmidt SO, Curry RW Jr, Gums JG, Donner KM, Kontula KK, Bailey KR, Boerwinkle E, Takahashi A, Tanaka T, Kubo M, Chapman AB, Turner ST, Pepine CJ, Cooper-DeHoff RM, Johnson JA. PTPRD gene associated with blood pressure response to atenolol and resistant hypertension. J Hypertens. PMID: 26425837. 2015 Nov;33(11):2278-85. doi: 10.1097/HJH.0000000000000714.5.062
Zhang X, Hamadeh IS, Song S, Katz J, Moreb JS, Langaee TY, Lesko LJ, Gong Y. Osteonecrosis of the Jaw in the United States Food and Drug Administration's Adverse Event Reporting System (FAERS). J Bone Miner Res. PMID: 26288087. 2016 Feb;31(2):336-40. doi: 10.1002/jbmr.2693. Epub 2015 Sep 4.5.622
Abzug MJ, Michaels MG, Wald E, Jacobs RF, Romero JR, Sánchez PJ, Wilson G, Krogstad P, Storch GA, Lawrence R, Shelton M, Palmer A, Robinson J, Dennehy P, Sood SK, Cloud G, Jester P, Acosta EP, Whitley R, Kimberlin D; National Institute of Allergy and Infectious Diseases Collaborative Antiviral Study Group. A Randomized, Double-Blind, Placebo-Controlled Trial of Pleconaril for the Treatment of Neonates With Enterovirus Sepsis. J Pediatric Infect Dis Soc. PMID: 26407253. 2016 Mar;5(1):53-62. doi: 10.1093/jpids/piv015. Epub 2015 Apr 16.0.83
Gupta N, Lawrence RM, Nguyen C, Modica RF. Review article: BK virus in systemic lupus erythematosus. Pediatr Rheumatol Online J. PMID: 26293687. 2015 Aug 21;13:34. doi: 10.1186/s12969-015-0033-9. Review. 0.25
Torbati M, Lele TP, Agrawal A. An unresolved LINC in the nuclear envelope. Cell Mol Bioeng. PMID: 27330571. 2016 Jun;9(2):252-257. Epub 2016 Feb 18. 1.589
Kent IA, Rane PS, Dickinson RB, Ladd AJ, Lele TP. Transient Pinning and Pulling: A Mechanism for Bending Microtubules. PLoS One. PMID: 26974838. 2016 Mar 14;11(3):e0151322. doi: 10.1371/journal.pone.0151322. eCollection 2016. 3.057
Aggarwal V, Dickinson RB, Lele TP. Concentration Sensing by the Moving Nucleus in Cell Fate Determination: A Computational Analysis. PLoS One. PMID: 26872214. 2016 Feb 12;11(2):e0149213. doi: 10.1371/journal.pone.0149213. eCollection 2016. 3.057
Neelam S, Hayes PR, Zhang Q, Dickinson RB, Lele TP. Vertical uniformity of cells and nuclei in epithelial monolayers. Sci Rep. PMID: 26795751. 2016 Jan 22;6:19689. doi: 10.1038/srep19689. 5.228
Zhang Q, Kota KP, Alam SG, Nickerson JA, Dickinson RB, Lele TP. Coordinated Dynamics of RNA Splicing Speckles in the Nucleus. J Cell Physiol. PMID: 26496460. 2016 Jun;231(6):1269-75. doi: 10.1002/jcp.25224. Epub 2015 Nov 24.4.155
Li Y, Lovett D, Zhang Q, Neelam S, Kuchibhotla RA, Zhu R, Gundersen GG, Lele TP, Dickinson RB. Moving Cell Boundaries Drive Nuclear Shaping during Cell Spreading. Biophys J. PMID: 26287620. 2015 Aug 18;109(4):670-86. doi: 10.1016/j.bpj.2015.07.00 3.632
Neelam S, Dickinson RB, Lele TP. New approaches for understanding the nuclear force balance in living, adherent cells. Methods. PMID: 26115785. 2016 Feb 1;94:27-32. doi: 10.1016/j.ymeth.2015.06.014. Epub 2015 Jun 24. Review. 3.503
Leonard CM. Finding prefrontal cortex in the rat. Brain Res. PMID: 26867704. 2016 Aug 15;1645:1-3. doi: 10.1016/j.brainres.2016.02.002. Epub 2016 Feb 8. Review.2.561
Rex TS, Kasmala L, Bond WS, de Lucas Cerrillo AM, Wynn K, Lewin AS. Erythropoietin Slows Photoreceptor Cell Death in a Mouse Model of Autosomal Dominant Retinitis Pigmentosa. PLoS One. PMID: 27299810. 2016 Jun 14;11(6):e0157411. doi: 10.1371/journal.pone.0157411. eCollection 2016. 3.057
Ahmed CM, Biswal MR, Li H, Han P, Ildefonso CJ, Lewin AS. Repurposing an orally available drug for the treatment of geographic atrophy. Mol Vis. PMID: 27110092. 2016 Apr 2;22:294-310. eCollection 2016. 2.11
Berkowitz BA, Lewin AS, Biswal MR, Bredell BX, Davis C, Roberts R. MRI of Retinal Free Radical Production With Laminar Resolution In Vivo. Invest Ophthalmol Vis Sci. PMID: 26886890. 2016 Feb;57(2):577-85. doi: 10.1167/iovs.15-18972. 3.427
Ildefonso CJ, Jaime H, Brown EE, Iwata RL, Ahmed CM, Massengill MT, Biswal MR, Boye SE, Hauswirth WW, Ash JD, Li Q, Lewin AS. Targeting the Nrf2 Signaling Pathway in the Retina With a Gene-Delivered Secretable and Cell-Penetrating Peptide. Invest Ophthalmol Vis Sci. PMID: 26842755. 2016 Feb;57(2):372-86. doi: 10.1167/iovs.15-17703.3.427
Beltran WA, Cideciyan AV, Iwabe S, Swider M, Kosyk MS, McDaid K, Martynyuk I, Ying GS, Shaffer J, Deng WT, Boye SL, Lewin AS, Hauswirth WW, Jacobson SG, Aguirre GD. Successful arrest of photoreceptor and vision loss expands the therapeutic window of retinal gene therapy to later stages of disease. Proc Natl Acad Sci U S A. PMID: 26460017. 2015 Oct 27;112(43):E5844-53. doi: 10.1073/pnas.1509914112. Epub 2015 Oct 12. 9.423
Yu H, Koilkonda RD, Chou TH, Porciatti V, Mehta A, Hentall ID, Chiodo VA, Boye SL, Hauswirth WW, Lewin AS, Guy J. Consequences of zygote injection and germline transfer of mutant human mitochondrial DNA in mice. Proc Natl Acad Sci U S A. PMID: 26438859. 2015 Oct 20;112(42):E5689-98. doi: 10.1073/pnas.1506129112. Epub 2015 Oct 5. 9.423
Conley SM, Whalen P, Lewin AS, Naash MI. Characterization of Ribozymes Targeting a Congenital Night Blindness Mutation in Rhodopsin Mutation. Adv Exp Med Biol. PMID: 26427453. 2016;854:509-15. doi: 10.1007/978-3-319-17121-0_68.1.953
Chiang WC, Joseph V, Yasumura D, Matthes MT, Lewin AS, Gorbatyuk MS, Ahern K, LaVail MM, Lin JH. Ablation of Chop Transiently Enhances Photoreceptor Survival but Does Not Prevent Retinal Degeneration in Transgenic Mice Expressing Human P23H Rhodopsin. Adv Exp Med Biol. PMID: 26427410. 2016;854:185-91. doi: 10.1007/978-3-319-17121-0_25. 1.953
Ildefonso CJ, Biswal MR, Ahmed CM, Lewin AS. The NLRP3 Inflammasome and its Role in Age-Related Macular Degeneration. Adv Exp Med Biol. PMID: 26427394. 2016;854:59-65. doi: 10.1007/978-3-319-17121-0_9. Review.1.953
Biswal MR, Ildefonso CJ, Mao H, Seo SJ, Wang Z, Li H, Le YZ, Lewin AS. Conditional Induction of Oxidative Stress in RPE: A Mouse Model of Progressive Retinal Degeneration. Adv Exp Med Biol. PMID: 26427390. 2016;854:31-7. doi: 10.1007/978-3-319-17121-0_5.1.953
Biswal MR, Ahmed CM, Ildefonso CJ, Han P, Li H, Jivanji H, Mao H, Lewin AS. Systemic treatment with a 5HT1a agonist induces anti-oxidant protection and preserves the retina from mitochondrial oxidative stress. Exp Eye Res. PMID: 26315784. 2015 Nov;140:94-105. doi: 10.1016/j.exer.2015.07.022. Epub 2015 Aug 25.2.998
Li Y, Huang S. Chromatin rules. Stem Cell Investig. PMID: 27358896. 2016 Feb 23;3:4. doi: 10.3978/j.issn.2306-9759.2016.02.02. eCollection 2016. No abstract available. 4.1
Zhuang H, Han S, Li Y, Kienhöfer D, Lee P, Shumyak S, Meyerholz R, Rosadzinski K, Rosner D, Chan A, Xu Y, Segal M, Sobel E, Yang LJ, Hoffmann MH, Reeves WH. A novel mechanism for generating the interferon signature in lupus: opsonization of dead cells by complement and IgM. Arthritis Rheumatol. PMID: 27274010. 2016 Jun 6. doi: 10.1002/art.39781. [Epub ahead of print]6.009
Liao D. Profiling technologies for the identification and characterization of small-molecule histone deacetylase inhibitors. Drug Discov Today Technol. PMID: 26723889. 2015 Nov;18:24-8. doi: 10.1016/j.ddtec.2015.10.006. Review.2.67
Mahmud I, Liao D. Microarray gene expression profiling reveals potential mechanisms of tumor suppression by the class I HDAC-selective benzoylhydrazide inhibitors. Genom Data. PMID: 26217556. 2015 Sep 1;5:257-259. 0.52
Han C, Linser P, Park HJ, Kim MJ, White K, Vann JM, Ding D, Prolla TA, Someya S. Sirt1 deficiency protects cochlear cells and delays the early onset of age-related hearing loss in C57BL/6 mice. Neurobiol Aging. PMID: 27255815. 2016 Jul;43:58-71. doi: 10.1016/j.neurobiolaging.2016.03.023. Epub 2016 Mar 30.5.153
Khan E, Farooqi JQ, Barr KL, Prakoso D, Nasir A, Kanji A, Shakoor S, Malik FR, Hasan R, Lednicky JA, Long MT. Flaviviruses as a Cause of Undifferentiated Fever in Sindh Province, Pakistan: A Preliminary Report. Front Public Health. PMID: 26909342. 2016 Feb 16;4:8. doi: 10.3389/fpubh.2016.00008. eCollection 2016. 2.11
Delcambre GH, Liu J, Herrington JM, Vallario K, Long MT. Immunohistochemistry for the detection of neural and inflammatory cells in equine brain tissue. PeerJ. PMID: 26855862. 2016 Jan 25;4:e1601. doi: 10.7717/peerj.1601. eCollection 2016. 2.183
Ekiri AB, Long MT, Hernandez JA. Diagnostic performance and application of a real-time PCR assay for the detection of Salmonella in fecal samples collected from hospitalized horses with or without signs of gastrointestinal tract disease. Vet J. PMID: 26797475. 2016 Feb;208:28-32. doi: 10.1016/j.tvjl.2015.11.011. Epub 2015 Nov 27.1.68
Blancato VS, Pagliai FA, Magni C, Gonzalez CF, Lorca GL. Functional Analysis of the Citrate Activator CitO from Enterococcus faecalis Implicates a Divalent Metal in Ligand Binding. Front Microbiol. PMID: 26903980. 2016 Feb 9;7:101. doi: 10.3389/fmicb.2016.00101. eCollection 2016. 4.165
Johns N, Wrench A, Loto F, Valladares R, Lorca G, Gonzalez CF. The Escherichia coli yjfP Gene Encodes a Carboxylesterase Involved in Sugar Utilization during Diauxie. J Mol Microbiol Biotechnol. PMID: 26820469. 2015;25(6):412-22. doi: 10.1159/000442819. Epub 2016 Jan 29. 1.701
Pagliai FA, Gonzalez CF, Lorca GL. Identification of a Ligand Binding Pocket in LdtR from Liberibacter asiaticus. Front Microbiol. PMID: 26635775. 2015 Nov 25;6:1314. doi: 10.3389/fmicb.2015.01314. eCollection 2015. 4.165
Valladares RB, Graves C, Wright K, Gardner CL, Lorca GL, Gonzalez CF. H2O2 production rate in Lactobacillus johnsonii is modulated via the interplay of a heterodimeric flavin oxidoreductase with a soluble 28 Kd PAS domain containing protein. Front Microbiol. PMID: 26236298. 2015 Jul 14;6:716. doi: 10.3389/fmicb.2015.00716. eCollection 2015. 4.165
Lim S, Smith KR, Lim ST, Tian R, Lu J, Tan M. Regulation of mitochondrial functions by protein phosphorylation and dephosphorylation. Cell Biosci. PMID: 27087918. 2016 Apr 14;6:25. doi: 10.1186/s13578-016-0089-3. eCollection 2016. Review. 2.883
Jin Y, Cai Q, Shenoy AK, Lim S, Zhang Y, Charles S, Tarrash M, Fu X, Kamarajugadda S, Trevino JG, Tan M, Lu J. Src drives the Warburg effect and therapy resistance by inactivating pyruvate dehydrogenase through tyrosine-289 phosphorylation. Oncotarget. PMID: 26848621. 2016 May 3;7(18):25113-24. doi: 10.18632/oncotarget.7159. 5.008
Wu J, Folta KM, Xie Y, Jiang W, Lu J, Zhang Y. Overexpression of Muscadinia rotundifolia CBF2 gene enhances biotic and abiotic stress tolerance in Arabidopsis. Protoplasma. PMID: 26795343. 2016 Jan 21. [Epub ahead of print]2.343
Brant JO, Lopez MC, Baker HV, Barbazuk WB, Maden M. A Comparative Analysis of Gene Expression Profiles during Skin Regeneration in Mus and Acomys. PLoS One. PMID: 26606282. 2015 Nov 25;10(11):e0142931. doi: 10.1371/journal.pone.0142931. eCollection 2015. 3.057
Brant JO, Yoon JH, Polvadore T, Barbazuk WB, Maden M. Cellular events during scar-free skin regeneration in the spiny mouse, Acomys. Wound Repair Regen. PMID: 26606280. 2016 Jan-Feb;24(1):75-88. doi: 10.1111/wrr.12385. Epub 2016 Jan 19.2.628
Pinheiro de Oliveira F, Mendes RH, Dobbler PT, Mai V, Pylro VS, Waugh SG, Vairo F, Refosco LF, Roesch LF, Schwartz IV. Phenylketonuria and Gut Microbiota: A Controlled Study Based on Next-Generation Sequencing. PLoS One. PMID: 27336782. 2016 Jun 23;11(6):e0157513. doi: 10.1371/journal.pone.0157513. eCollection 2016. 3.057
Mai V, Prosperi M, Yaghjyan L. Moving microbiota research toward establishing causal associations that represent viable targets for effective public health interventions. Ann Epidemiol. PMID: 27133768. 2016 May;26(5):306-10. doi: 10.1016/j.annepidem.2016.03.011. Epub 2016 Apr 8. Review.2.335
Mai V, Ukhanova M, Reinhard MK, Li M, Sulakvelidze A. Bacteriophage administration significantly reduces Shigella colonization and shedding by Shigella-challenged mice without deleterious side effects and distortions in the gut microbiota. Bacteriophage. PMID: 26909243. 2015 Aug 28;5(4):e1088124. eCollection 2015 Oct-Dec.1.4
Burns AM, Zitt MA, Rowe CC, Langkamp-Henken B, Mai V, Nieves C Jr, Ukhanova M, Christman MC, Dahl WJ. Diet quality improves for parents and children when almonds are incorporated into their daily diet: a randomized, crossover study. Nutr Res. PMID: 26773784. 2016 Jan;36(1):80-9. doi: 10.1016/j.nutres.2015.11.004. Epub 2015 Nov 10.2.523
Dahl WJ, Ford AL, Coppola JA, Lopez D, Combs W, Rohani A, Ukhanova M, Culpepper T, Tompkins TA, Christman M, Mai V. Calcium phosphate supplementation increases faecal Lactobacillus spp. in a randomised trial of young adults. Benef Microbes. PMID: 26503737. 2015 Oct 27:1-8. [Epub ahead of print]3.301
Garrison AT, Abouelhassan Y, Kallifidas D, Bai F, Ukhanova M, Mai V, Jin S, Luesch H, Huigens RW 3rd. Halogenated Phenazines that Potently Eradicate Biofilms, MRSA Persister Cells in Non-Biofilm Cultures, and Mycobacterium tuberculosis. Angew Chem Int Ed Engl. PMID: 26480852. 2015 Dec 1;54(49):14819-23. doi: 10.1002/anie.201508155. Epub 2015 Oct 20.11.709
Martindale MQ. The onset of regenerative properties in ctenophores. Curr Opin Genet Dev. PMID: 27420173. 2016 Jul 12;40:113-119. doi: 10.1016/j.gde.2016.06.017. [Epub ahead of print] Review.5.784
Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I. The mid-developmental transition and the evolution of animal body plans. Nature. PMID: 26886793. 2016 Mar 31;531(7596):637-41. doi: 10.1038/nature16994. Epub 2016 Feb 17. 38.138
Botman D, Jansson F, Röttinger E, Martindale MQ, de Jong J, Kaandorp JA. Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development. BMC Syst Biol. PMID: 26400098. 2015 Sep 24;9:63. doi: 10.1186/s12918-015-0209-4.2.208
Zhang S, Ross KD, Seidner GA, Gorman MR, Poon TH, Wang X, Keithley EM, Lee PN, Martindale MQ, Joiner WJ, Hamilton BA. Nmf9 Encodes a Highly Conserved Protein Important to Neurological Function in Mice and Flies. PLoS Genet. PMID: 26131556. 2015 Jul 1;11(7):e1005344. doi: 10.1371/journal.pgen.1005344. eCollection 2015 Jul. 6.661
Pai VP, Martyniuk CJ, Echeverri K, Sundelacruz S, Kaplan DL, Levin M. Genome-wide analysis reveals conserved transcriptional responses downstream of resting potential change in Xenopus embryos, axolotl regeneration, and human mesenchymal cell differentiation. Regeneration (Oxf). PMID: 27499876. 2015 Nov 26;3(1):3-25. doi: 10.1002/reg2.48. eCollection 2016 Feb. N/A
Martyniuk CJ, Simmons DB. Spotlight on environmental omics and toxicology: a long way in a short time. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27398986. 2016 Sep;19:97-101. doi: 10.1016/j.cbd.2016.06.010. Epub 2016 Jun 29.2.254
Martyniuk CJ, Doperalski NJ, Prucha MS, Zhang JL, Kroll KJ, Conrow R, Barber DS, Denslow ND. High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27397556. 2016 Sep;19:140-50. doi: 10.1016/j.cbd.2016.06.003. Epub 2016 Jun 20.2.254
Martyniuk CJ, Doperalski NJ, Feswick A, Prucha MS, Kroll KJ, Barber DS, Denslow ND. Transcriptional networks associated with the immune system are disrupted by organochlorine pesticides in largemouth bass (Micropterus salmoides) ovary. Aquat Toxicol. PMID: 27391359. 2016 Aug;177:405-16. doi: 10.1016/j.aquatox.2016.06.009. Epub 2016 Jun 17.3.557
Dreier DA, Loughery JR, Denslow ND, Martyniuk CJ. The influence of breeding strategy, reproductive stage, and tissue type on transcript variability in fish. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27325421. 2016 Sep;19:151-8. doi: 10.1016/j.cbd.2016.05.005. Epub 2016 Jun 4.2.254
Sánchez Garayzar AB, Bahamonde PA, Martyniuk CJ, Betancourt M, Munkittrick KR. Hepatic gene expression profiling in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 27264782. 2016 Sep;19:102-11. doi: 10.1016/j.cbd.2016.04.004. Epub 2016 May 2.2.254
Ahmari N, Schmidt JT, Krane GA, Malphurs W, Cunningham BE, Owen JL, Martyniuk CJ, Zubcevic J. Loss of bone marrow adrenergic beta 1 and 2 receptors modifies transcriptional networks, reduces circulating inflammatory factors, and regulates blood pressure. Physiol Genomics. PMID: 27235450. 2016 Jul 1;48(7):526-36. doi: 10.1152/physiolgenomics.00039.2016. Epub 2016 May 27.2.615
Xing L, Martyniuk CJ, Esau C, Da Fonte DF, Trudeau VL. Proteomic profiling reveals dopaminergic regulation of progenitor cell functions of goldfish radial glial cells in vitro. J Proteomics. PMID: 27185549. 2016 Jul 20;144:123-32. doi: 10.1016/j.jprot.2016.05.003. Epub 2016 May 10.3.867
Mathieu-Denoncourt J, Martyniuk CJ, Loughery JR, Yargeau V, de Solla SR, Langlois VS. Lethal and sublethal effects of phthalate diesters in Silurana tropicalis larvae. Environ Toxicol Chem. PMID: 26924002. 2016 Feb 29. doi: 10.1002/etc.3413. [Epub ahead of print]2.763
Collí-Dulá RC, Martyniuk CJ, Streets S, Denslow ND, Lehr R. Molecular impacts of perfluorinated chemicals (PFASs) in the liver and testis of male largemouth bass (Micropterus salmoides) in Minnesota Lakes. Comp Biochem Physiol Part D Genomics Proteomics. PMID: 26907229. 2016 Sep;19:129-39. doi: 10.1016/j.cbd.2016.02.001. Epub 2016 Feb 6.2.254
Marlatt VL, Sherrard R, Kennedy CJ, Elphick JR, Martyniuk CJ. Application of molecular endpoints in early life stage salmonid environmental biomonitoring. Aquat Toxicol. PMID: 26874677. 2016 Apr;173:178-91. doi: 10.1016/j.aquatox.2016.01.006. Epub 2016 Jan 28.3.557
Bahamonde PA, Feswick A, Isaacs MA, Munkittrick KR, Martyniuk CJ. Defining the role of omics in assessing ecosystem health: Perspectives from the Canadian environmental monitoring program. Environ Toxicol Chem. PMID: 26771350. 2016 Jan;35(1):20-35. doi: 10.1002/etc.3218. Epub 2015 Dec 3. Review.2.763
Lobikin M, Lobo D, Blackiston DJ, Martyniuk CJ, Tkachenko E, Levin M. Serotonergic regulation of melanocyte conversion: A bioelectrically regulated network for stochastic all-or-none hyperpigmentation. Sci Signal. PMID: 26443706. 2015 Oct 6;8(397):ra99. doi: 10.1126/scisignal.aac6609.7.359
Zhang J, Koch I, Gibson LA, Loughery JR, Martyniuk CJ, Button M, Caumette G, Reimer KJ, Cullen WR, Langlois VS. Transcriptomic Responses During Early Development Following Arsenic Exposure in Western Clawed Frogs, Silurana tropicalis. Toxicol Sci. PMID: 26427749. 2015 Dec;148(2):603-17. doi: 10.1093/toxsci/kfv207. Epub 2015 Oct 1.3.88
Ornostay A, Marr J, Loughery JR, Martyniuk CJ. Transcriptional networks associated with 5-alpha-dihydrotestosterone in the fathead minnow (Pimephales promelas) ovary. Gen Comp Endocrinol. PMID: 26344943. 2016 Jan 1;225:23-32. doi: 10.1016/j.ygcen.2015.09.005. Epub 2015 Sep 3.2.667
Wood RK, Crowley E, Martyniuk CJ. Developmental profiles and expression of the DNA methyltransferase genes in the fathead minnow (Pimephales promelas) following exposure to di-2-ethylhexyl phthalate. Fish Physiol Biochem. PMID: 26251286. 2016 Feb;42(1):7-18. doi: 10.1007/s10695-015-0112-3. Epub 2015 Aug 7.1.442
Miller LL, Isaacs MA, Martyniuk CJ, Munkittrick KR. Using molecular biomarkers and traditional morphometric measurements to assess the health of slimy sculpin (Cottus cognatus) from streams with elevated selenium in North-Eastern British Columbia. Environ Toxicol Chem. PMID: 25982233. 2015 Oct;34(10):2335-46. doi: 10.1002/etc.3064. Epub 2015 Sep 11.2.763
Mathews CA, Stern JS. The First World Congress on Tourette Syndrome and Tic Disorders: Controversies and Hot Topics in Etiology and Treatment. Front Neurosci. PMID: 27375411. 2016 Jun 7;10:246. doi: 10.3389/fnins.2016.00246. eCollection 2016. 3.398
Besterman AD, Williams JK, Reus VI, Pato MT, Voglmaier SM, Mathews CA. The Role of Regional Conferences in Research Resident Career Development: The California Psychiatry Research Resident Retreat. Acad Psychiatry. PMID: 27178277. 2016 May 13. [Epub ahead of print]1.217
Mathews CA, Uhm S, Chan J, Gause M, Franklin J, Plumadore J, Stark SJ, Yu W, Vigil O, Salazar M, Delucchi KL, Vega E. Treating Hoarding Disorder in a real-world setting: Results from the Mental Health Association of San Francisco. Psychiatry Res. PMID: 26805562. 2016 Mar 30;237:331-8. doi: 10.1016/j.psychres.2016.01.019. Epub 2016 Jan 21.2.466
Burton CL, Crosbie J, Dupuis A, Mathews CA, Soreni N, Schachar R, Arnold PD. Clinical Correlates of Hoarding With and Without Comorbid Obsessive-Compulsive Symptoms in a Community Pediatric Sample. J Am Acad Child Adolesc Psychiatry. PMID: 26802778. 2016 Feb;55(2):114-21.e2. doi: 10.1016/j.jaac.2015.11.014. Epub 2015 Dec 2.7.182
Fu X, Liu R, Sanchez I, Silva-Sanchez C, Hepowit NL, Cao S, Chen S, Maupin-Furlow J. Ubiquitin-Like Proteasome System Represents a Eukaryotic-Like Pathway for Targeted Proteolysis in Archaea. MBio. PMID: 27190215. 2016 May 17;7(3). pii: e00379-16. doi: 10.1128/mBio.00379-16. Erratum in: MBio. 2016;7(4). pii: e01192-16. doi: 10.1128/mBio.01192-16.6.975
Dantuluri S, Wu Y, Hepowit NL, Chen H, Chen S, Maupin-Furlow JA. Proteome targets of ubiquitin-like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcanii. Proteomics. PMID: 26841191. 2016 Apr;16(7):1100-10. doi: 10.1002/pmic.201500153.4.079
McMillan LJ, Hepowit NL, Maupin-Furlow JA. Archaeal Inorganic Pyrophosphatase Displays Robust Activity under High-Salt Conditions and in Organic Solvents. Appl Environ Microbiol. PMID: 26546423. 2015 Nov 6;82(2):538-48. doi: 10.1128/AEM.03055-15. 3.823
Li C, Shen Y, Meeley R, McCarty DR, Tan BC. Embryo defective 14 encodes a plastid-targeted cGTPase essential for embryogenesis in maize. Plant J. PMID: 26771182. 2015 Nov;84(4):785-99. doi: 10.1111/tpj.13045.5468
Suzuki M, Sato Y, Wu S, Kang BH, McCarty DR. Conserved Functions of the MATE Transporter BIG EMBRYO1 in Regulation of Lateral Organ Size and Initiation Rate. Plant Cell. PMID: 26276834. 2015 Aug;27(8):2288-300. doi: 10.1105/tpc.15.00290. Epub 2015 Aug 14. 8.538
Magdy M, Werner O, McDaniel SF, Goffinet B, Ros RM. Genomic scanning using AFLP to detect loci under selection in the moss Funaria hygrometrica along a climate gradient in the Sierra Nevada Mountains, Spain.Plant Biol (Stuttg). PMID: 26284822. 2016 Mar;18(2):280-8. doi: 10.1111/plb.12381. Epub 2015 Sep 8.2.216
Villa NY, Rahman MM, McFadden G, Cogle CR. Therapeutics for Graft-versus-Host Disease: From Conventional Therapies to Novel Virotherapeutic Strategies. Viruses. PMID: 27011200. 2016 Mar 22;8(3):85. doi: 10.3390/v8030085. Review.3.042
Pisklakova A, McKenzie B, Zemp F, Lun X, Kenchappa RS, Etame AB, Rahman MM, Reilly K, Pilon-Thomas S, McFadden G, Kurz E, Forsyth PA. M011L-deficient oncolytic myxoma virus induces apoptosis in brain tumor-initiating cells and enhances survival in a novel immunocompetent mouse model of glioblastoma. Neuro Oncol. PMID: 26962017. 2016 Mar 8. pii: now006. [Epub ahead of print]5.43
Peng C, Haller SL, Rahman MM, McFadden G, Rothenburg S. Myxoma virus M156 is a specific inhibitor of rabbit PKR but contains a loss-of-function mutation in Australian virus isolates. Proc Natl Acad Sci U S A. PMID: 26903626. 2016 Apr 5;113(14):3855-60. doi: 10.1073/pnas.1515613113. Epub 2016 Feb 22. 9.423
Villa NY, Bais S, Chan WM, Meacham AM, Wise E, Rahman MM, Moreb JS, Rosenau EH, Wingard JR, McFadden G, Cogle CR. Ex vivo virotherapy with myxoma virus does not impair hematopoietic stem and progenitor cells. Cytotherapy. PMID: 26857235. 2016 Mar;18(3):465-80. doi: 10.1016/j.jcyt.2015.12.007.3.625
Bell JC, McFadden G. Editorial overview: Oncolytic viruses--replicating virus therapeutics for the treatment of cancer. Curr Opin Virol. PMID: 26260227. 2015 Aug;13:viii-ix. doi: 10.1016/j.coviro.2015.07.005. Epub 2015 Aug 7. No abstract available.5.313
Fear JM, León-Novelo LG, Morse AM, Gerken AR, Van Lehmann K, Tower J, Nuzhdin SV, McIntyre LM. Buffering of Genetic Regulatory Networks in Drosophila melanogaster. Genetics. PMID: 27194752. 2016 Jul;203(3):1177-90. doi: 10.1534/genetics.116.188797. Epub 2016 May 18.4.644
Akin D, Newman JR, McIntyre LM, Sugrue SP. RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells. Mol Vis. PMID: 26900324. 2016 Jan 16;22:40-60. eCollection 2016.2.11
Fear JM, Arbeitman MN, Salomon MP, Dalton JE, Tower J, Nuzhdin SV, McIntyre LM. The Wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in Drosophila melanogaster. BMC Syst Biol. PMID: 26335107. 2015 Sep 4;9:53. doi: 10.1186/s12918-015-0200-0.2.208
Lin S, Nadeau PE, Mergia A. HIV inhibits endothelial reverse cholesterol transport through impacting subcellular Caveolin-1 trafficking. Retrovirology. PMID: 26169283. 2015 Jul 15;12:62. doi: 10.1186/s12977-015-0188-y. 3.989
Joseph PN, Sasson DA, Allen PE, Somjee U, Miller CW. Adult nutrition, but not inbreeding, affects male primary sexual traits in the leaf-footed cactus bug Narnia femorata (Hemiptera: Coreidae). Ecol Evol. PMID: 27547313. 2016 Jun 16;6(14):4792-9. doi: 10.1002/ece3.2246. eCollection 2016 Jul. 2.537
Sasson DA, Munoz PR, Gezan SA, Miller CW. Resource quality affects weapon and testis size and the ability of these traits to respond to selection in the leaf-footed cactus bug, Narnia femorata. Ecol Evol. PMID: 27066225. 2016 Feb 26;6(7):2098-108. doi: 10.1002/ece3.2017. eCollection 2016 Apr. 2.537
Qiu F, Li H, Lin H, Ding S, Miyamoto MM. Phylogeography of the inshore fish, Bostrychus sinensis, along the Pacific coastline of China. Mol Phylogenet Evol. PMID: 26732489. 2016 Mar;96:112-7. doi: 10.1016/j.ympev.2015.11.020. Epub 2015 Dec 28.3.792
Qiu F, Ding S, Ou H, Wang D, Chen J, Miyamoto MM. Transcriptome Changes during the Life Cycle of the Red Sponge, Mycale phyllophila (Porifera, Demospongiae, Poecilosclerida). Genes (Basel). PMID: 26492274. 2015 Oct 20;6(4):1023-52. doi: 10.3390/genes6041023. 3.242
Shantharaj D, Römer P, Figueiredo JF, Minsavage GV, Krönauer C, Stall RE, Moore GA, Fisher LC, Hu Y, Horvath DM, Lahaye T, Jones JB. An engineered promoter driving expression of a microbial avirulence gene confers recognition of TAL effectors and reduces growth of diverse Xanthomonas strains in citrus. Mol Plant Pathol. PMID: 27362693. 2016 Jun 30. doi: 10.1111/mpp.12454. [Epub ahead of print]4.335
Shi Q, Febres VJ, Jones JB, Moore GA. A survey of FLS2 genes from multiple citrus species identifies candidates for enhancing disease resistance to Xanthomonas citri ssp. citri. Hortic Res. PMID: 27222722. 2016 May 11;3:16022. doi: 10.1038/hortres.2016.22. eCollection 2016. 4.09
Halanych KM, Whelan NV, Kocot KM, Kohn AB, Moroz LL. Miscues misplace sponges. Proc Natl Acad Sci U S A. PMID: 26862177. 2016 Feb 23;113(8):E946-7. doi: 10.1073/pnas.1525332113. Epub 2016 Feb 9. No abstract available. 9.423
Telford MJ, Moroz LL, Halanych KM. Evolution: A sisterly dispute. Nature. PMID: 26791714. 2016 Jan 21;529(7586):286-7. doi: 10.1038/529286a. No abstract available.38.138
Yang Q, Kuzyk P, Antonov I, Bostwick CJ, Kohn AB, Moroz LL, Hawkins RD. Hyperpolarization-activated, cyclic nucleotide-gated cation channels in Aplysia: Contribution to classical conditioning. Proc Natl Acad Sci U S A. PMID: 26668355. 2015 Dec 29;112(52):16030-5. doi: 10.1073/pnas.1501731113. Epub 2015 Dec 14. 9.423
Moroz LL, Kohn AB. Independent origins of neurons and synapses: insights from ctenophores. Philos Trans R Soc Lond B Biol Sci. PMID: 26598724. 2016 Jan 5;371(1685):20150041. doi: 10.1098/rstb.2015.0041. Review. 4.997
Wang C, Zhang X, Mou Z. Comparison of nicotinamide adenine dinucleotide phosphate-induced immune responses against biotrophic and necrotrophic pathogens in Arabidopsis thaliana. Plant Signal Behav. PMID: 27031653. 2016 Jun 2;11(6):e1169358. doi: 10.1080/15592324.2016.1169358.1.47
An C, Ding Y, Zhang X, Wang C, Mou Z. Elongator Plays a Positive Role in Exogenous NAD-Induced Defense Responses in Arabidopsis. Mol Plant Microbe Interact. PMID: 26926998. 2016 May;29(5):396-404. doi: 10.1094/MPMI-01-16-0005-R. Epub 2016 Apr 5.4.145
Ding Y, Dommel M, Mou Z. Abscisic acid promotes proteasome-mediated degradation of the transcription coactivator NPR1 in Arabidopsis thaliana. Plant J. PMID: 26865090. 2016 Apr;86(1):20-34. doi: 10.1111/tpj.13141.5.468
Wang C, Ding Y, Yao J, Zhang Y, Sun Y, Colee J, Mou Z. Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola. Plant J. PMID: 26216741. 2015 Sep;83(6):1019-33. doi: 10.1111/tpj.12946. Epub 2015 Aug 17. 5.468
Wang C, Yao J, Du X, Zhang Y, Sun Y, Rollins JA, Mou Z. The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorum. Plant Physiol. PMID: 26143252. 2015 Sep;169(1):856-72. doi: 10.1104/pp.15.00351. Epub 2015 Jul 4. 6.28
Wang K, McFarland KN, Liu J, Zeng D, Landrian I, Xia G, Hao Y, Jin M, Mulligan CJ, Gu W, Ashizawa T. Spinocerebellar ataxia type 10 in Chinese Han. Neurol Genet. PMID: 27066563. 2015 Oct 8;1(3):e26. doi: 10.1212/NXG.0000000000000026. eCollection 2015 Oct. N/A
Černý V, Čížková M, Poloni ES, Al-Meeri A, Mulligan CJ. Comprehensive view of the population history of Arabia as inferred by mtDNA variation. Am J Phys Anthropol. PMID: 26691891. 2016 Apr;159(4):607-16. doi: 10.1002/ajpa.22920. Epub 2015 Dec 22.2.402
Vyas DN, Kitchen A, Miró-Herrans AT, Pearson LN, Al-Meeri A, Mulligan CJ. Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia. Am J Phys Anthropol. PMID: 26567083. 2016 Mar;159(3):382-93. doi: 10.1002/ajpa.22890. Epub 2015 Nov 14.2.402
Carter TE, Malloy H, Existe A, Memnon G, St Victor Y, Okech BA, Mulligan CJ. Genetic Diversity of Plasmodium falciparum in Haiti: Insights from Microsatellite Markers. PLoS One. PMID: 26462203. 2015 Oct 13;10(10):e0140416. doi: 10.1371/journal.pone.0140416. eCollection 2015. 3.057
Kertes DA, Kamin H, Hughes DA, Rodney N, Bhatt SS, Mulligan CJ. Maternal stress predicts methylation of genes regulating the HPA axis in mothers and newborns in the Democratic Republic of Congo. Psychoneuroendocrinology. PMID: 26383286. 2015 Nov;61:5. doi: 10.1016/j.psyneuen.2015.07.399. Epub 2015 Aug 8. No abstract available.4.704
Méndez-Gómez HR, Galera-Prat A, Meyers C, Chen W, Singh J, Carrión-Vázquez M, Muzyczka N. Transcytosis in the blood-cerebrospinal fluid barrier of the mouse brain with an engineered receptor/ligand system. Mol Ther Methods Clin Dev. PMID: 26491705. 2015 Oct 7;2:15037. doi: 10.1038/mtm.2015.37. eCollection 2015.N/A
Zhou Y, Notterpek L. Promoting peripheral myelin repair. Exp Neurol. PMID: 27079997. 2016 Sep;283(Pt B):573-80. doi: 10.1016/j.expneurol.2016.04.007. Epub 2016 Apr 11. Review.4.44
Hernandez W, Gamazon ER, Smithberger E, O'Brien TJ, Harralson AF, Tuck M, Barbour A, Kittles RA, Cavallari LH, Perera MA. Novel genetic predictors of venous thromboembolism risk in African Americans. Blood. PMID: 26888256. 2016 Apr 14;127(15):1923-9. doi: 10.1182/blood-2015-09-668525. Epub 2016 Feb 17. 11.847
Bae HS, Holmes ME, Chanton JP, Reddy KR, Ogram A. Distribution, activities, and interactions of methanogens and sulfate-reducing prokaryotes in the Florida Everglades. Appl Environ Microbiol. PMID: 26276115. 2015 Nov;81(21):7431-42. doi: 10.1128/AEM.01583-15. Epub 2015 Aug 14. 3.823
Zhang R, Han Z, Degos V, Shen F, Choi EJ, Sun Z, Kang S, Wong M, Zhu W, Zhan L, Arthur HM, Oh SP, Faughnan ME, Su H. Persistent infiltration and pro-inflammatory differentiation of monocytes cause unresolved inflammation in brain arteriovenous malformation. Angiogenesis. PMID: 27325285. 2016 Oct;19(4):451-61. doi: 10.1007/s10456-016-9519-4. Epub 2016 Jun 20.4.301
Sung YH, Baek IJ, Kim YH, Gho YS, Oh SP, Lee YJ, Lee HW. PIERCE1 is critical for specification of left-right asymmetry in mice. Sci Rep. PMID: 27305836. 2016 Jun 16;6:27932. doi: 10.1038/srep27932. 5.228
Gkatzis K, Thalgott J, Dos-Santos-Luis D, Martin S, Lamandé N, Carette MF, Disch F, Snijder RJ, Westermann CJ, Mager JJ, Oh SP, Miquerol L, Arthur HM, Mummery CL, Lebrin F. Interaction Between ALK1 Signaling and Connexin40 in the Development of Arteriovenous Malformations. Arterioscler Thromb Vasc Biol. PMID: 26821948. 2016 Apr;36(4):707-17. doi: 10.1161/ATVBAHA.115.306719. Epub 2016 Jan 28.5.969
Tual-Chalot S, Oh SP, Arthur HM. Mouse models of hereditary hemorrhagic telangiectasia: recent advances and future challenges. Front Genet. PMID: 25741358. 2015 Feb 18;6:25. doi: 10.3389/fgene.2015.00025. eCollection 2015. 3.92
Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS. The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. Front Plant Sci. PMID: 26779209. 2016 Jan 5;6:1144. doi: 10.3389/fpls.2015.01144. eCollection 2015. 4.495
Johnson SA, Sacks PK, Turner SM, Gaynor LS, Ormerod BK, Maurer AP, Bizon JL, Burke SN. Discrimination performance in aging is vulnerable to interference and dissociable from spatial memory. Learn Mem. PMID: 27317194. 2016 Jun 17;23(7):339-48. doi: 10.1101/lm.042069.116. Print 2016 Jul.2.906
Sandhu MS, Ross HH, Lee KZ, Ormerod BK, Reier PJ, Fuller DD. Intraspinal transplantation of subventricular zone-derived neural progenitor cells improves phrenic motor output after high cervical spinal cord injury. Exp Neurol. PMID: 27302679. 2016 Jun 11. pii: S0014-4886(16)30172-8. doi: 10.1016/j.expneurol.2016.06.007. [Epub ahead of print]4.657
Sullivan K, Cramer-Morales K, McElroy DL, Ostrov DA, Haas K, Childers W, Hromas R, Skorski T. Identification of a Small Molecule Inhibitor of RAD52 by Structure-Based Selection. PLoS One. PMID: 26784987. 2016 Jan 19;11(1):e0147230. doi: 10.1371/journal.pone.0147230. eCollection 2016. 3.057
Looney BM, Xia CQ, Concannon P, Ostrov DA, Clare-Salzler MJ. Effects of type 1 diabetes-associated IFIH1 polymorphisms on MDA5 function and expression. Curr Diab Rep. PMID: 26385483. 2015 Nov;15(11):96. doi: 10.1007/s11892-015-0656-8. Review.3.711
Wheatley LM, Plaut M, Schwaninger JM, Banerji A, Castells M, Finkelman FD, Gleich GJ, Guttman-Yassky E, Mallal SA, Naisbitt DJ, Ostrov DA, Phillips EJ, Pichler WJ, Platts-Mills TA, Roujeau JC, Schwartz LB, Trepanier LA. Report from the National Institute of Allergy and Infectious Diseases workshop on drug allergy. J Allergy Clin Immunol. PMID: 26254053. 2015 Aug;136(2):262-71.e2. doi: 10.1016/j.jaci.2015.05.027. 12.485
Michels AW, Ostrov DA. New approaches for predicting T cell-mediated drug reactions: A role for inducible and potentially preventable autoimmunity. J Allergy Clin Immunol. PMID: 26254052. 2015 Aug;136(2):252-7. doi: 10.1016/j.jaci.2015.06.024. Review. 12.485
Pirmohamed M, Ostrov DA, Park BK. New genetic findings lead the way to a better understanding of fundamental mechanisms of drug hypersensitivity. J Allergy Clin Immunol. PMID: 26254050. 2015 Aug;136(2):236-44. doi: 10.1016/j.jaci.2015.06.022. Review. 12.485
Thottakkara P, Ozrazgat-Baslanti T, Hupf BB, Rashidi P, Pardalos P, Momcilovic P, Bihorac A. Application of Machine Learning Techniques to High-Dimensional Clinical Data to Forecast Postoperative Complications. PLoS One. PMID: 27232332. 2016 May 27;11(5):e0155705. doi: 10.1371/journal.pone.0155705. eCollection 2016.3.057
Pappas I, Pardalos P. Identifying Cognitive States Using Regularity Partitions. PLoS One. PMID: 26317983. 2015 Aug 28;10(8):e0137012. doi: 10.1371/journal.pone.0137012. eCollection 2015. 3.057
Korenkevych D, Ozrazgat-Baslanti T, Thottakkara P, Hobson CE, Pardalos P, Momcilovic P, Bihorac A. The Pattern of Longitudinal Change in Serum Creatinine and 90-Day Mortality After Major Surgery. Ann Surg. PMID: 26181482. 2016 Jun;263(6):1219-27. doi: 10.1097/SLA.0000000000001362.8.569
Gökirmak T, Denison FC, Laughner BJ, Paul AL, Ferl RJ. Phosphomimetic mutation of a conserved serine residue in Arabidopsis thaliana 14-3-3ω suggests a regulatory role of phosphorylation in dimerization and target interactions. Plant Physiol Biochem. PMID: 26512969. 2015 Dec;97:296-303. doi: 10.1016/j.plaphy.2015.10.022. Epub 2015 Oct 21.2.928
Boissin E, Hoareau TB, Paulay G, Bruggemann JH. Shallow-water reef ophiuroids (Echinodermata: Ophiuroidea) of Réunion (Mascarene Islands), with biogeographic considerations. Zootaxa. PMID: 27394586. 2016 Apr 6;4098(2):273-97. doi: 10.11646/zootaxa.4098.2.4.0.994
Erpenbeck D, Voigt O, Al-Aidaroos AM, Berumen ML, Büttner G, Catania D, Guirguis AN, Paulay G, Schätzle S, Wörheide G. Molecular biodiversity of Red Sea demosponges. Mar Pollut Bull. PMID: 26776057. 2016 Apr 30;105(2):507-14. doi: 10.1016/j.marpolbul.2015.12.004. Epub 2016 Jan 7.3.099
Abdalla EA, Peñagaricano F, Byrem TM, Weigel KA, Rosa GJ. Genome-wide association mapping and pathway analysis of leukosis incidence in a US Holstein cattle population. Anim Genet. PMID: 27090879. 2016 Aug;47(4):395-407. doi: 10.1111/age.12438. Epub 2016 Apr 19.1.779
Laporta J, Peñagaricano F, Hernandez LL. Transcriptomic Analysis of the Mouse Mammary Gland Reveals New Insights for the Role of Serotonin in Lactation. PLoS One. PMID: 26470019. 2015 Oct 15;10(10):e0140425. doi: 10.1371/journal.pone.0140425. eCollection 2015. 3.057
Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ. Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data. BMC Syst Biol. PMID: 26376630. 2015 Sep 16;9:58. doi: 10.1186/s12918-015-0207-6.2.208
Swamy PS, Hu H, Pattathil S, Maloney VJ, Xiao H, Xue LJ, Chung JD, Johnson VE, Zhu Y, Peter GF, Hahn MG, Mansfield SD, Harding SA, Tsai CJ. Tubulin perturbation leads to unexpected cell wall modifications and affects stomatal behaviour in Populus. J Exp Bot. PMID: 26246616. 2015 Oct;66(20):6507-18. doi: 10.1093/jxb/erv383. Epub 2015 Aug 5.5.677
Liu Y, Pattamatta A, Zu T, Reid T, Bardhi O, Borchelt DR, Yachnis AT, Ranum LP. C9orf72 BAC Mouse Model with Motor Deficits and Neurodegenerative Features of ALS/FTD. Neuron. PMID: 27112499. 2016 May 4;90(3):521-34. doi: 10.1016/j.neuron.2016.04.005. Epub 2016 Apr 21.13.974
Bañez-Coronel M, Ayhan F, Tarabochia AD, Zu T, Perez BA, Tusi SK, Pletnikova O, Borchelt DR, Ross CA, Margolis RL, Yachnis AT, Troncoso JC, Ranum LP. RAN Translation in Huntington Disease. Neuron. PMID: 26590344. 2015 Nov 18;88(4):667-77. doi: 10.1016/j.neuron.2015.10.038.13.974
Anton SD, Woods AJ, Ashizawa T, Barb D, Buford TW, Carter CS, Clark DJ, Cohen RA, Corbett DB, Cruz-Almeida Y, Dotson V, Ebner N, Efron PA, Fillingim RB, Foster TC, Gundermann DM, Joseph AM, Karabetian C, Leeuwenburgh C, Manini TM, Marsiske M, Mankowski RT, Mutchie HL, Perri MG, Ranka S, Rashidi P, Sandesara B, Scarpace PJ, Sibille KT, Solberg LM, Someya S, Uphold C, Wohlgemuth S, Wu SS, Pahor M. Successful aging: Advancing the science of physical independence in older adults. Ageing Res Rev. PMID: 26462882. 2015 Nov;24(Pt B):304-27. doi: 10.1016/j.arr.2015.09.005. Epub 2015 Oct 14. Review.7.526
Goncalves EC, Koh J, Zhu N, Yoo MJ, Chen S, Matsuo T, Johnson JV, Rathinasabapathi B. Nitrogen starvation-induced accumulation of triacylglycerol in the green algae: evidence for a role for ROC40, a transcription factor involved in circadian rhythm. Plant J. PMID: 26920093. 2016 Mar;85(6):743-57. doi: 10.1111/tpj.13144.5.468
Goncalves EC, Wilkie AC, Kirst M, Rathinasabapathi B. Metabolic regulation of triacylglycerol accumulation in the green algae: identification of potential targets for engineering to improve oil yield. Plant Biotechnol J. PMID: 26801206. 2016 Aug;14(8):1649-60. doi: 10.1111/pbi.12523. Epub 2016 Jan 23. Review.6.09
de Oliveira LM, Gress J, De J, Rathinasabapathi B, Marchi G, Chen Y, Ma LQ. Sulfate and chromate increased each other's uptake and translocation in As-hyperaccumulator Pteris vittata. Chemosphere. PMID: 26761595. 2016 Mar;147:36-43. doi: 10.1016/j.chemosphere.2015.12.088. Epub 2016 Jan 4.3.698
Chen Y, Fu JW, Han YH, Rathinasabapathi B, Ma LQ. High As exposure induced substantial arsenite efflux in As-hyperaccumulator Pteris vittata. Chemosphere. PMID: 26595313. 2016 Feb;144:2189-94. doi: 10.1016/j.chemosphere.2015.11.001. Epub 2015 Nov 18.3.698
Han YH, Fu JW, Chen Y, Rathinasabapathi B, Ma LQ. Arsenic uptake, arsenite efflux and plant growth in hyperaccumulator Pteris vittata: Role of arsenic-resistant bacteria. Chemosphere. PMID: 26547029. 2016 Feb;144:1937-42. doi: 10.1016/j.chemosphere.2015.10.096. Epub 2015 Nov 11.3.698
Boyd BM, Allen JM, Koga R, Fukatsu T, Sweet AD, Johnson KP, Reed DL. Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura). Appl Environ Microbiol. PMID: 26994086. 2016 May 16;82(11):3185-97. doi: 10.1128/AEM.00282-16. Print 2016 Jun 1.3.823
Li W, Yan Q, Ding X, Shen C, Hu M, Zhu Y, Qin D, Lu H, Krueger BJ, Renne R, Gao SJ, Lu C. The SH3BGR/STAT3 Pathway Regulates Cell Migration and Angiogenesis Induced by a Gammaherpesvirus MicroRNA. PLoS Pathog. PMID: 27128969. 2016 Apr 29;12(4):e1005605. doi: 10.1371/journal.ppat.1005605. eCollection 2016 Apr. 7.003
Feldman ER, Kara M, Oko LM, Grau KR, Krueger BJ, Zhang J, Feng P, van Dyk LF, Renne R, Tibbetts SA. A Gammaherpesvirus Noncoding RNA Is Essential for Hematogenous Dissemination and Establishment of Peripheral Latency. mSphere. PMID: 27110595. 2016 Apr;1(2). pii: e00105-15. Epub 2016 Mar 2.N/A
Li W, Jia X, Shen C, Zhang M, Xu J, Shang Y, Zhu K, Hu M, Yan Q, Qin D, Lee MS, Zhu J, Lu H, Krueger BJ, Renne R, Gao SJ, Lu C. A KSHV microRNA enhances viral latency and induces angiogenesis by targeting GRK2 to activate the CXCR2/AKT pathway. Oncotarget. PMID: 27058419. 2016 May 31;7(22):32286-305. doi: 10.18632/oncotarget.8591.5.008
Dai L, Qiao J, Nguyen D, Struckhoff AP, Doyle L, Bonstaff K, Del Valle L, Parsons C, Toole BP, Renne R, Qin Z. Role of heme oxygenase-1 in the pathogenesis and tumorigenicity of Kaposi's sarcoma-associated herpesvirus. Oncotarget. PMID: 26859574. 2016 Mar 1;7(9):10459-71. doi: 10.18632/oncotarget.7227. 5.008
Lee MS, Yuan H, Jeon H, Zhu Y, Yoo S, Shi S, Krueger B, Renne R, Lu C, Jung JU, Gao SJ. Human Mesenchymal Stem Cells of Diverse Origins Support Persistent Infection with Kaposi's Sarcoma-Associated Herpesvirus and Manifest Distinct Angiogenic, Invasive, and Transforming Phenotypes. MBio. PMID: 26814175. 2016 Jan 26;7(1):e02109-15. doi: 10.1128/mBio.02109-15. 6.975
Choi HS, Jain V, Krueger B, Marshall V, Kim CH, Shisler JL, Whitby D, Renne R. Kaposi's Sarcoma-Associated Herpesvirus (KSHV) Induces the Oncogenic miR-17-92 Cluster and Down-Regulates TGF-β Signaling. PLoS Pathog. PMID: 26545119. 2015 Nov 6;11(11):e1005255. doi: 10.1371/journal.ppat.1005255. eCollection 2015. 7.003
Hu M, Wang C, Li W, Lu W, Bai Z, Qin D, Yan Q, Zhu J, Krueger BJ, Renne R, Gao SJ, Lu C. A KSHV microRNA Directly Targets G Protein-Coupled Receptor Kinase 2 to Promote the Migration and Invasion of Endothelial Cells by Inducing CXCR2 and Activating AKT Signaling. PLoS Pathog. PMID: 26402907. 2015 Sep 24;11(9):e1005171. doi: 10.1371/journal.ppat.1005171. eCollection 2015 Sep.7.003
Minjarez B, Calderón-González KG, Valero Rustarazo ML, Herrera-Aguirre ME, Labra-Barrios ML,Rincon-Limas DE, Sánchez Del Pino MM, Mena R, Luna-Arias JP. Data set of interactomes and metabolic pathways of proteins differentially expressed in brains with Alzheimer ׳ s disease. Data Brief. PMID: 27257613. 2016 May 6;7:1707-19. doi: 10.1016/j.dib.2016.04.071. eCollection 2016 Jun.1.43
Minjarez B, Calderón-González KG, Rustarazo ML, Herrera-Aguirre ME, Labra-Barrios ML, Rincon-Limas DE, Del Pino MM, Mena R, Luna-Arias JP. Identification of proteins that are differentially expressed in brains with Alzheimer's disease using iTRAQ labeling and tandem mass spectrometry. J Proteomics. PMID: 27012543. 2016 Apr 29;139:103-21. doi: 10.1016/j.jprot.2016.03.022. Epub 2016 Mar 21.3.867
Fernandez-Funez P, Zhang Y, Sanchez-Garcia J, de Mena L, Khare S, Golde TE, Levites Y, Rincon-Limas DE. Anti-Aβ single-chain variable fragment antibodies exert synergistic neuroprotective activities in Drosophila models of Alzheimer's disease. Hum Mol Genet. PMID: 26253732. 2015 Nov 1;24(21):6093-105. doi: 10.1093/hmg/ddv321. Epub 2015 Aug 7.5.985
Vanterpool SF, Been JV, Houben ML, Nikkels PG, De Krijger RR, Zimmermann LJ, Kramer BW, Progulske-Fox A, Reyes L. Porphyromonas gingivalis within Placental Villous Mesenchyme and Umbilical Cord Stroma Is Associated with Adverse Pregnancy Outcome. PLoS One. PMID: 26731111. 2016 Jan 5;11(1):e0146157. doi: 10.1371/journal.pone.0146157. eCollection 2016.3.057
Chernov AV, Reyes L, Peterson S, Strongin AY. Depletion of CG-Specific Methylation in Mycoplasma hyorhinis Genomic DNA after Host Cell Invasion. PLoS One. PMID: 26544880. 2015 Nov 6;10(11):e0142529. doi: 10.1371/journal.pone.0142529. eCollection 2015. 3.057
Doughan B, Rollins JA. Characterization of MAT gene functions in the life cycle of Sclerotinia sclerotiorum reveals a lineage-specific MAT gene functioning in apothecium morphogenesis. Fungal Biol. PMID: 27567717. 2016 Sep;120(9):1105-17. doi: 10.1016/j.funbio.2016.06.007. Epub 2016 Jun 22.2.244
Fan H, Yu G, Liu Y, Zhang X, Liu J, Zhang Y, Rollins JA, Sun F, Pan H. An atypical forkhead-containing transcription factor SsFKH1 is involved in sclerotial formation and is essential for pathogenicity in Sclerotinia sclerotiorum. Mol Plant Pathol. PMID: 27353472. 2016 Jun 29. doi: 10.1111/mpp.12453. [Epub ahead of print]4.335
Liang X, Moomaw EW, Rollins JA. Fungal oxalate decarboxylase activity contributes to Sclerotinia sclerotiorum early infection by affecting both compound appressoria development and function. Mol Plant Pathol. PMID: 25597873. 2015 Oct;16(8):825-36. doi: 10.1111/mpp.12239. Epub 2015 Apr 15.4.335
Vakulskas CA, Leng Y, Abe H, Amaki T, Okayama A, Babitzke P, Suzuki K, Romeo T. Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins. Nucleic Acids Res. PMID: 27235416. 2016 Sep 19;44(16):7896-910. doi: 10.1093/nar/gkw484. Epub 2016 May 27.9.202
Wang Y, Andole Pannuri A, Ni D, Zhou H, Cao X, Lu X, Romeo T, Huang Y. Structural Basis for Translocation of a Biofilm-supporting Exopolysaccharide across the Bacterial Outer Membrane. J Biol Chem. PMID: 26957546. 2016 May 6;291(19):10046-57. doi: 10.1074/jbc.M115.711762. Epub 2016 Mar 8.4.285
Zere TR, Vakulskas CA, Leng Y, Pannuri A, Potts AH, Dias R, Tang D, Kolaczkowski B, Georgellis D, Ahmer BM, Romeo T. Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems. PLoS One. PMID: 26673755. 2015 Dec 16;10(12):e0145035. doi: 10.1371/journal.pone.0145035. eCollection 2015. 3.057
Leng Y, Vakulskas CA, Zere TR, Pickering BS, Watnick PI, Babitzke P, Romeo T. Regulation of CsrB/C sRNA decay by EIIA(Glc) of the phosphoenolpyruvate: carbohydrate phosphotransferase system. Mol Microbiol. PMID: 26507976. 2016 Feb;99(4):627-39. doi: 10.1111/mmi.13259. Epub 2015 Nov 17.3.761
Park H, Yakhnin H, Connolly M, Romeo T, Babitzke P. CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of pnp Transcripts That Have Been Previously Processed by RNase III and PNPase. J Bacteriol. PMID: 26438818. 2015 Dec;197(24):3751-9. doi: 10.1128/JB.00721-15. Epub 2015 Oct 5.3.198
Vakulskas CA, Potts AH, Babitzke P, Ahmer BM, Romeo T. Regulation of bacterial virulence by Csr (Rsm) systems. Microbiol Mol Biol Rev. PMID: 25833324. 2015 Jun;79(2):193-224. doi: 10.1128/MMBR.00052-14. Review.14.167
Babonis LS, Martindale MQ, Ryan JF. Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis. BMC Evol Biol. PMID: 27216622. 2016 May 23;16(1):114. doi: 10.1186/s12862-016-0683-3.3.406
Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML. Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata). Genome Biol Evol. PMID: 27189985. 2016 Jun 3;8(5):1571-89. doi: 10.1093/gbe/evw100.4.098
Long KA, Nossa CW, Sewell MA, Putnam NH, Ryan JF. Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis. Gigascience. PMID: 27175279. 2016 May 10;5:20. doi: 10.1186/s13742-016-0125-6. eCollection 2016. 7.463
Sasson DA, Ryan JF. The sex lives of ctenophores: the influence of light, body size, and self-fertilization on the reproductive output of the sea walnut, Mnemiopsis leidyi. PeerJ. PMID: 27042395. 2016 Mar 24;4:e1846. doi: 10.7717/peerj.1846. eCollection 2016. 2.183
Zwarycz AS, Nossa CW, Putnam NH, Ryan JF. Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida. Genome Biol Evol. PMID: 26659921. 2015 Dec 10;8(1):271-81. doi: 10.1093/gbe/evv243.4.098
Ryan JF, Chiodin M. Where is my mind? How sponges and placozoans may have lost neural cell types. Philos Trans R Soc Lond B Biol Sci. PMID: 26554046. 2015 Dec 19;370(1684). pii: 20150059. doi: 10.1098/rstb.2015.0059. Review.4.997
Dunn CW, Ryan JF. The evolution of animal genomes. Curr Opin Genet Dev. PMID: 26363125. 2015 Dec;35:25-32. doi: 10.1016/j.gde.2015.08.006. Epub 2015 Sep 9. Review.5.784
Church SH, Ryan JF, Dunn CW. Automation and Evaluation of the SOWH Test with SOWHAT. Syst Biol. PMID: 26231182. 2015 Nov;64(6):1048-58. doi: 10.1093/sysbio/syv055. Epub 2015 Jul 30.8.225
Azarian T, Daum RS, Petty LA, Steinbeck JL, Yin Z, Nolan D, Boyle-Vavra S, Hanage WP, Salemi M, David MZ. Intrahost Evolution of Methicillin-Resistant Staphylococcus aureus USA300 Among Individuals With Reoccurring Skin and Soft-Tissue Infections. J Infect Dis. PMID: 27288537. 2016 Sep 15;214(6):895-905. doi: 10.1093/infdis/jiw242. Epub 2016 Jun 10.6.344
Lednicky J, Beau De Rochars VM, El Badry M, Loeb J, Telisma T, Chavannes S, Anilis G, Cella E, Ciccozzi M, Rashid M, Okech B, Salemi M, Morris JG Jr. Zika Virus Outbreak in Haiti in 2014: Molecular and Clinical Data. PLoS Negl Trop Dis. PMID: 27111294. 2016 Apr 25;10(4):e0004687. doi: 10.1371/journal.pntd.0004687. eCollection 2016 Apr. 3.948
Cella E, Gabrielli I, Zehender G, Giovanetti M, Lo Presti A, Lai A, Dicuonzo G, Angeletti S, Salemi M, Ciccozzi M. Phylogeny of Murray Valley encephalitis virus in Australia and Papua New Guinea. Asian Pac J Trop Med. PMID: 27086158. 2016 Apr;9(4):385-9. doi: 10.1016/j.apjtm.2016.03.006. Epub 2016 Mar 9.0.841
Lamers SL, Fogel GB, Liu ES, Salemi M, McGrath MS. On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition. AIDS Res Hum Retroviruses. PMID: 27071630. 2016 Aug;32(8):829-40. doi: 10.1089/AID.2015.0373. Epub 2016 Jun 1.1.949
Jain N, Morgan CE, Rife BD, Salemi M, Tolbert BS. Solution Structure of the HIV-1 Intron Splicing Silencer and Its Interactions with the UP1 Domain of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) A1. J Biol Chem. PMID: 26607354. 2016 Jan 29;291(5):2331-44. doi: 10.1074/jbc.M115.674564. Epub 2015 Nov 24.4.258
Lamers SL, Rose R, Ndhlovu LC, Nolan DJ, Salemi M, Maidji E, Stoddart CA, McGrath MS. The meningeal lymphatic system: a route for HIV brain migration? J Neurovirol. PMID: 26572785. 2016 Jun;22(3):275-81. doi: 10.1007/s13365-015-0399-y. Epub 2015 Nov 16. Review.2.569
Salemi M, Rife B. Phylogenetics and Phyloanatomy of HIV/SIV Intra-Host Compartments and Reservoirs: The Key Role of the Central Nervous System. Curr HIV Res. PMID: 26511341. 2016;14(2):110-20.1.562
Fogel GB, Lamers SL, Liu ES, Salemi M, McGrath MS. Identification of dual-tropic HIV-1 using evolved neural networks. Biosystems. PMID: 26419858. 2015 Nov;137:12-9. doi: 10.1016/j.biosystems.2015.09.007. Epub 2015 Sep 28.1.495
Chan PA, Hogan JW, Huang A, DeLong A, Salemi M, Mayer KH, Kantor R. Phylogenetic Investigation of a Statewide HIV-1 Epidemic Reveals Ongoing and Active Transmission Networks Among Men Who Have Sex With Men. J Acquir Immune Defic Syndr. PMID: 26258569. 2015 Dec 1;70(4):428-35. doi: 10.1097/QAI.0000000000000786.3.806
Santos LA, Gray RR, Monteiro-Cunha JP, Strazza E, Kashima S, Santos Ede S, Araújo TH, Gonçalves Mde S, Salemi M, Alcantara LC. Short communication: phylodynamics analysis of the human immunodeficiency virus type 1 envelope gene in mother and child pairs. AIDS Res Hum Retroviruses. PMID: 26123053. 2015 Sep;31(9):913-20. doi: 10.1089/AID.2014.0352. Epub 2015 Jul 23.1.949
Lamers SL, Nolan DJ, Rife BD, Fogel GB, McGrath MS, Burdo TH, Autissier P, Williams KC, Goodenow MM, Salemi M. Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques. J Virol. PMID: 26041280. 2015 Aug;89(16):8484-96. doi: 10.1128/JVI.01010-15. Epub 2015 Jun 3. 4.606
Azarian T, Cook RL, Johnson JA, Guzman N, McCarter YS, Gomez N, Rathore MH, Morris JG, Salemi M. Whole-genome sequencing for outbreak investigations of methicillin-resistant Staphylococcus aureus in the neonatal intensive care unit: time for routine practice? Infect Control Hosp Epidemiol. PMID: 25998499. 2015 Jul;36(7):777-85. doi: 10.1017/ice.2015.73. Epub 2015 May 8.3.669
Ribeiro ES, Santos JE, Thatcher WW. Role of lipids on elongation of the preimplantation conceptus in ruminants. Reproduction. PMID: 27335133. 2016 Oct;152(4):R115-26. doi: 10.1530/REP-16-0104. Epub 2016 Jun 22. Review.3.184
Wiltbank MC, Baez GM, Garcia-Guerra A, Toledo MZ, Monteiro PL, Melo LF, Ochoa JC, Santos JE, Sartori R. Pivotal periods for pregnancy loss during the first trimester of gestation in lactating dairy cows. Theriogenology. PMID: 27238438. 2016 Jul 1;86(1):239-53. doi: 10.1016/j.theriogenology.2016.04.037. Epub 2016 Apr 22. Review.1.838
Santos JE, Bisinotto RS, Ribeiro ES. Mechanisms underlying reduced fertility in anovular dairy cows. Theriogenology. PMID: 27160451. 2016 Jul 1;86(1):254-62. doi: 10.1016/j.theriogenology.2016.04.038. Epub 2016 Apr 21. Review.1.838
Ribeiro ES, Monteiro AP, Bisinotto RS, Lima FS, Greco LF, Ealy AD, Thatcher WW, Santos JE. Conceptus development and transcriptome at preimplantation stages in lactating dairy cows of distinct genetic groups and estrous cyclic statuses. J Dairy Sci. PMID: 27016828. 2016 Jun;99(6):4761-77. doi: 10.3168/jds.2015-10315. Epub 2016 Mar 24.2.408
Vieira-Neto A, Lima FS, Santos JE, Mingoti RD, Vasconcellos GS, Risco CA, Galvao KN. Vulvovaginal laceration as a risk factor for uterine disease in postpartum dairy cows. J Dairy Sci. PMID: 27016827. 2016 Jun;99(6):4629-37. doi: 10.3168/jds.2016-10872. Epub 2016 Mar 24.2.408
Ribeiro ES, Greco LF, Bisinotto RS, Lima FS, Thatcher WW, Santos JE. Biology of Preimplantation Conceptus at the Onset of Elongation in Dairy Cows. Biol Reprod. PMID: 26935601. 2016 Apr;94(4):97. doi: 10.1095/biolreprod.115.134908. Epub 2016 Mar 2.3.471
Ribeiro ES, Gomes G, Greco LF, Cerri RL, Vieira-Neto A, Monteiro PL Jr, Lima FS, Bisinotto RS, Thatcher WW, Santos JE. Carryover effect of postpartum inflammatory diseases on developmental biology and fertility in lactating dairy cows. J Dairy Sci. PMID: 26723113. 2016 Mar;99(3):2201-20. doi: 10.3168/jds.2015-10337. Epub 2015 Dec 24.2.408
Kelley DE, Ibarbia L, Daetz R, Bittar JH, Risco CA, Santos JE, Ribeiro ES, Galvão KN. Combined use of progesterone inserts, ultrasongraphy, and GnRH to identify and resynchronize nonpregnant cows and heifers 21 days after timed artificial insemination. Theriogenology. PMID: 26522703. 2016 Jan 15;85(2):230-7. doi: 10.1016/j.theriogenology.2015.09.052. Epub 2015 Oct 8.1.838
Lean IJ, Lucy MC, McNamara JP, Bradford BJ, Block E, Thomson JM, Morton JM, Celi P, Rabiee AR,Santos JE, Thatcher WW, LeBlanc SJ. Invited review: Recommendations for reporting intervention studies on reproductive performance in dairy cattle: Improving design, analysis, and interpretation of research on reproduction. J Dairy Sci. PMID: 26387020. 2016 Jan;99(1):1-17. doi: 10.3168/jds.2015-9445. Epub 2015 Sep 18. Review. 2.408
Silva TV, Lima FS, Thatcher WW, Santos JE. Synchronized ovulation for first insemination improves reproductive performance and reduces cost per pregnancy in dairy heifers. J Dairy Sci. PMID: 26298767. 2015 Nov;98(11):7810-22. doi: 10.3168/jds.2015-9704. Epub 2015 Aug 20.2.408
Lima FS, Greco LF, Bisinotto RS, Ribeiro ES, Martinez NM, Thatcher WW, Santos JE, Reinhard MK, Galvão KN. Effects of intrauterine infusion of Trueperella pyogenes on endometrial mRNA expression of proinflammatory cytokines and luteolytic cascade genes and their association with luteal life span in dairy cows. Theriogenology. PMID: 26234463. 2015 Nov;84(8):1263-72. doi: 10.1016/j.theriogenology.2015.07.004. Epub 2015 Jul 13.1.838
Vehik K, Lynch KF, Schatz DA, Akolkar B, Hagopian W, Rewers M, She JX, Simell O, Toppari J, Ziegler AG, Lernmark Å, Bonifacio E, Krischer JP; TEDDY Study Group. Reversion of β-Cell Autoimmunity Changes Risk of Type 1 Diabetes: TEDDY Study. Diabetes Care. PMID: 27311490. 2016 Sep;39(9):1535-42. doi: 10.2337/dc16-0181. Epub 2016 Jun 16.8.934
Törn C, Liu X, Hagopian W, Lernmark Å, Simell O, Rewers M, Ziegler AG, Schatz D, Akolkar B, Onengut-Gumuscu S, Chen WM, Toppari J, Mykkänen J, Ilonen J, Rich SS, She JX, Sharma A, Steck A, Krischer J; TEDDY Study Group. Complement gene variants in relation to autoantibodies to beta cell specific antigens and type 1 diabetes in the TEDDY Study. Sci Rep. PMID: 27306948. 2016 Jun 16;6:27887. doi: 10.1038/srep27887.5.228
Wasserfall C, Montgomery E, Yu L, Michels A, Gianani R, Pugliese A, Nierras C, Kaddis JS, Schatz DA, Bonifacio E, Atkinson MA. Validation of a rapid type 1 diabetes autoantibody screening assay for community-based screening of organ donors to identify subjects at increased risk for the disease. Clin Exp Immunol. PMID: 27029857. 2016 Jul;185(1):33-41. doi: 10.1111/cei.12797. Epub 2016 May 4.3.148
Lehmann-Werman R, Neiman D, Zemmour H, Moss J, Magenheim J, Vaknin-Dembinsky A, Rubertsson S, Nellgård B, Blennow K, Zetterberg H, Spalding K, Haller MJ, Wasserfall CH, Schatz DA, Greenbaum CJ, Dorrell C, Grompe M, Zick A, Hubert A, Maoz M, Fendrich V, Bartsch DK, Golan T, Ben Sasson SA, Zamir G, Razin A, Cedar H, Shapiro AM, Glaser B, Shemer R, Dor Y. Identification of tissue-specific cell death using methylation patterns of circulating DNA. Proc Natl Acad Sci U S A. PMID: 26976580. 2016 Mar 29;113(13):E1826-34. doi: 10.1073/pnas.1519286113. Epub 2016 Mar 14. 9.423
Sherr JL, Ruedy KJ, Foster NC, Piché CA, Dulude H, Rickels MR, Tamborlane WV, Bethin KE, DiMeglio LA, Fox LA, Wadwa RP, Schatz DA, Nathan BM, Marcovina SM, Rampakakis E, Meng L, Beck RW; T1D Exchange Intranasal Glucagon Investigators. Glucagon Nasal Powder: A Promising Alternative to Intramuscular Glucagon in Youth With Type 1 Diabetes. Diabetes Care. PMID: 26884472. 2016 Apr;39(4):555-62. doi: 10.2337/dc15-1606. Epub 2016 Feb 16.8.934
Albanese-O'Neill A, Schatz DA, Bernhardt JM, Elder JH. Educational Needs and Technological Preferences of Fathers of Youth With Type 1 Diabetes. Diabetes Educ. PMID: 26850045. 2016 Apr;42(2):209-19. doi: 10.1177/0145721716628649. Epub 2016 Feb 5.1.595
Nambam B, Bratina N, Schatz D. Immune Intervention in Type 1 Diabetes. Diabetes Technol Ther. PMID: 26836431. 2016 Feb;18 Suppl 1:S69-75. doi: 10.1089/dia.2016.2507. 2.198
Walker A, Schatz D, Johnson C, Silverstein J, Lyles S, Rohrs H. Type 1 diabetes through two lenses: comparing adolescent and parental perspectives with photovoice. Int J Pediatr Endocrinol. PMID: 26793242. 2016;2016:2. doi: 10.1186/s13633-016-0020-z. Epub 2016 Jan 20. 0.23
Fox LA, Mubasher M, Wolfsdorf JI, Buckingham BA, Peters AL, Tamborlane WV, Schatz DA, Maahs DM, Miller KM, Beck RW; T1D Exchange Clinic Network. Characteristics of youth with type 1 diabetes with and without a parent with type 1 diabetes in the T1D exchange clinic registry. J Diabetes. PMID: 26663683. 2015 Dec 12. doi: 10.1111/1753-0407.12363. 2.5
Wood JR, Connor CG, Cheng P, Ruedy KJ, Tamborlane WV, Klingensmith G, Schatz D, Gregg B, Cengiz E, Willi S, Bacha F, Beck RW; Pediatric Diabetes Consortium. Vitamin D status in youth with type 1 and type 2 diabetes enrolled in the Pediatric Diabetes Consortium (PDC) is not worse than in youth without diabetes. Pediatr Diabetes. PMID: 26611890. 2015 Nov 26. doi: 10.1111/pedi.12340. [Epub ahead of print]3.488
Haller MJ, Atkinson MA, Wasserfall CH, Brusko TM, Mathews CE, Hulme M, Cintron M, Shuster J, McGrail K, Posgai A, Schatz D. Mobilization without immune depletion fails to restore immunological tolerance or preserve beta cell function in recent onset type 1 diabetes. Clin Exp Immunol. PMID: 26462724. 2016 Mar;183(3):350-7. doi: 10.1111/cei.12731. Epub 2015 Dec 7.3.148
Bian X, Wallstrom G, Davis A, Wang J, Park J, Throop A, Steel J, Yu X, Wasserfall C, Schatz D, Atkinson M, Qiu J, LaBaer J. Immunoproteomic Profiling of Antiviral Antibodies in New-Onset Type 1 Diabetes Using Protein Arrays. Diabetes. PMID: 26450993. 2016 Jan;65(1):285-96. doi: 10.2337/db15-0179. Epub 2015 Oct 8. 8.784
Wherrett DK, Chiang JL, Delamater AM, DiMeglio LA, Gitelman SE, Gottlieb PA, Herold KC, Lovell DJ, Orchard TJ, Ryan CM, Schatz DA, Wendler DS, Greenbaum CJ; Type 1 Diabetes TrialNet Study Group. Defining pathways for development of disease-modifying therapies in children with type 1 diabetes: a consensus report. Diabetes Care. PMID: 26404927. 2015 Oct;38(10):1975-85. doi: 10.2337/dc15-1429. Review.8.934
Meehan C, Fout B, Ashcraft J, Schatz DA, Haller MJ. Screening for T1D risk to reduce DKA is not economically viable. Pediatr Diabetes. PMID: 26392298. 2015 Dec;16(8):565-72. doi: 10.1111/pedi.12313. Epub 2015 Sep 22.3.488
Maahs DM, Hermann JM, Holman N, Foster NC, Kapellen TM, Allgrove J, Schatz DA, Hofer SE, Campbell F, Steigleder-Schweiger C, Beck RW, Warner JT, Holl RW; National Paediatric Diabetes Audit and the Royal College of Paediatrics and Child Health, the DPV Initiative, and the T1D Exchange Clinic Network. Rates of diabetic ketoacidosis: international comparison with 49,859 pediatric patients with type 1 diabetes from England, Wales, the U.S., Austria, and Germany. Diabetes Care. PMID: 26283737. 2015 Oct;38(10):1876-82. doi: 10.2337/dc15-0780. Epub 2015 Aug 17.8.934
Clements MA, Foster NC, Maahs DM, Schatz DA, Olson BA, Tsalikian E, Lee JM, Burt-Solorzano CM, Tamborlane WV, Chen V, Miller KM, Beck RW; T1D Exchange Clinic Network. Hemoglobin A1c (HbA1c) changes over time among adolescent and young adult participants in the T1D exchange clinic registry. Pediatr Diabetes. PMID: 26153338. 2016 Aug;17(5):327-36. doi: 10.1111/pedi.12295. Epub 2015 Jul 8.3.488
Yang Q, Larose C, Della Porta AC, Schultz GS, Gibson DJ. A surfactant-based wound dressing can reduce bacterial biofilms in a porcine skin explant model. Int Wound J. PMID: 27212453. 2016 May 22. doi: 10.1111/iwj.12619. [Epub ahead of print]2.594
Magin CM, Neale DB, Drinker MC, Willenberg BJ, Reddy ST, La Perle KM, Schultz GS, Brennan AB. Evaluation of a bilayered, micropatterned hydrogel dressing for full-thickness wound healing. Exp Biol Med (Maywood). PMID: 27037279. 2016 May;241(9):986-95. doi: 10.1177/1535370216640943. Epub 2016 Mar 31.1.98
Pi L, Chung PY, Sriram S, Rahman MM, Song WY, Scott EW, Petersen BE, Schultz GS. Connective tissue growth factor differentially binds to members of the cystine knot superfamily and potentiates platelet-derived growth factor-B signaling in rabbit corneal fibroblast cells. World J Biol Chem. PMID: 26629321. 2015 Nov 26;6(4):379-88. doi: 10.4331/wjbc.v6.i4.379.3.43
Martorana GM, Schaefer JL, Levine MA, Lukowski ZL, Min J, Meyers CA, Schultz GS, Sherwood MB. Sequential Therapy with Saratin, Bevacizumab and Ilomastat to Prolong Bleb Function following Glaucoma Filtration Surgery in a Rabbit Model. PLoS One. PMID: 26394037. 2015 Sep 22;10(9):e0138054. doi: 10.1371/journal.pone.0138054. eCollection 2015. 3.057
Kim S, Zingler M, Harrison JK, Scott EW, Cogle CR, Luo D, Raizada MK. Angiotensin II Regulation of Proliferation, Differentiation, and Engraftment of Hematopoietic Stem Cells. Hypertension. PMID: 26781279. 2016 Mar;67(3):574-84. doi: 10.1161/HYPERTENSIONAHA.115.06474. Epub 2016 Jan 18.6.35
Pi L, Chung PY, Sriram S, Rahman MM, Song WY, Scott EW, Petersen BE, Schultz GS. Connective tissue growth factor differentially binds to members of the cystine knot superfamily and potentiates platelet-derived growth factor-B signaling in rabbit corneal fibroblast cells. World J Biol Chem. PMID: 26629321 Free PMC Article. 2015 Nov 26;6(4):379-88. doi: 10.4331/wjbc.v6.i4.379. 3.43
Seaver EC. Annelid models I: Capitella teleta. Curr Opin Genet Dev. PMID: 27318692. 2016 Jun 16;39:35-41. doi: 10.1016/j.gde.2016.05.025. [Epub ahead of print] Review.5.784
de Jong DM, Seaver EC. A Stable Thoracic Hox Code and Epimorphosis Characterize Posterior Regeneration in Capitella teleta. PLoS One. PMID: 26894631. 2016 Feb 19;11(2):e0149724. doi: 10.1371/journal.pone.0149724. eCollection 2016. 3.057
Yamaguchi E, Dannenberg LC, Amiel AR, Seaver EC. Regulative capacity for eye formation by first quartet micromeres of the polychaete Capitella teleta. Dev Biol. PMID: 26702513. 2016 Feb 1;410(1):119-30. doi: 10.1016/j.ydbio.2015.12.009. Epub 2015 Dec 17. 3.155
Meyer NP, Carrillo-Baltodano A, Moore RE, Seaver EC. Nervous system development in lecithotrophic larval and juvenile stages of the annelid Capitella teleta. Front Zool. PMID: 26167198. 2015 Jul 11;12:15. doi: 10.1186/s12983-015-0108-y. eCollection 2015. 3.042
Guadiana SM, Parker AK, Filho GF, Sequeira A, Semple-Rowland S, Shaw G, Mandel RJ, Foster TC, Kumar A, Sarkisian MR. Type 3 Adenylyl Cyclase and Somatostatin Receptor 3 Expression Persists in Aged Rat Neocortical and Hippocampal Neuronal Cilia. Front Aging Neurosci. PMID: 27303293. 2016 May 31;8:127. doi: 10.3389/fnagi.2016.00127. eCollection 2016.4.348
Parker AK, Le MM, Smith TS, Hoang-Minh LB, Atkinson EW, Ugartemendia G, Semple-Rowland S, Coleman JE, Sarkisian MR. Neonatal seizures induced by pentylenetetrazol or kainic acid disrupt primary cilia growth on developing mouse cortical neurons. Exp Neurol. PMID: 27181411. 2016 Aug;282:119-27. doi: 10.1016/j.expneurol.2016.05.015. Epub 2016 May 13.4.657
Hoang-Minh LB, Deleyrolle LP, Siebzehnrubl D, Ugartemendia G, Futch H, Griffith B, Breunig JJ, De Leon G, Mitchell DA, Semple-Rowland S, Reynolds BA, Sarkisian MR. Disruption of KIF3A in patient-derived glioblastoma cells: effects on ciliogenesis, hedgehog sensitivity, and tumorigenesis. Oncotarget. PMID: 26760767. 2016 Feb 9;7(6):7029-43. doi: 10.18632/oncotarget.6854.5.008
Sessa EB, Testo WL, Watkins JE Jr. On the widespread capacity for, and functional significance of, extreme inbreeding in ferns. New Phytol. PMID: 27094807. 2016 Aug;211(3):1108-19. doi: 10.1111/nph.13985. Epub 2016 Apr 20. 7.21
Li Z, Baniaga AE, Sessa EB, Scascitelli M, Graham SW, Rieseberg LH, Barker MS. Early genome duplications in conifers and other seed plants. Sci Adv. PMID: 26702445. 2015 Nov 20;1(10):e1501084. doi: 10.1126/sciadv.1501084. eCollection 2015 Nov.N/A
Gardner AG, Sessa EB, Michener P, Johnson E, Shepherd KA, Howarth DG, Jabaily RS. Utilizing next-generation sequencing to resolve the backbone of the Core Goodeniaceae and inform future taxonomic and floral form studies.Mol Phylogenet Evol. PMID: 26463342. 2016 Jan;94(Pt B):605-17. doi: 10.1016/j.ympev.2015.10.003. Epub 2015 Oct 20.3.792
Hacisalihoglu G, Gustin JL, Louisma J, Armstrong P, Peter GF, Walker AR, Settles AM. J Agric Food Chem. PMID: 26771201. 2016 Feb 10;64(5):1079-86. doi: 10.1021/acs.jafc.5b05508. Epub 2016 Jan 28.2.857
Neuberger EW, Perez I, Le Guiner C, Moser D, Ehlert T, Allais M, Moullier P, Simon P, Snyder RO. Establishment of two quantitative nested qPCR assays targeting the human EPO transgene. Gene Ther. PMID: 26752352. 2016 Apr;23(4):330-9. doi: 10.1038/gt.2016.2. Epub 2016 Jan 11.3.242
D'Costa S, Blouin V, Broucque F, Penaud-Budloo M, François A, Perez IC, Le Bec C, Moullier P,Snyder RO, Ayuso E. Practical utilization of recombinant AAV vector reference standards: focus on vector genomes titration by free ITR qPCR. Mol Ther Methods Clin Dev. PMID: 27069952. 2016 Mar 30;5:16019. doi: 10.1038/mtm.2016.19. eCollection 2016.N/A
Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS. The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century. Appl Plant Sci. PMID: 27347456. 2016 Jun 16;4(6). pii: apps.1600025. doi: 10.3732/apps.1600025. eCollection 2016 Jun.0.911
Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS. A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes. Appl Plant Sci. PMID: 27347455. 2016 Jun 16;4(6). pii: apps.1600024. doi: 10.3732/apps.1600024. eCollection 2016 Jun.0.911
Soltis DE. Floral flexibility: Diversification of the flower. Nat Plants. PMID: 27250754. 2016 Jan 6;2:15211. doi: 10.1038/nplants.2015.211. N/A
Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK, Stewart CN Jr. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. BMC Biotechnol. PMID: 27245738. 2016 May 31;16(1):47. doi: 10.1186/s12896-016-0277-6.2.452
Soltis DE, Visger CJ, Marchant DB, Soltis PS. Am J Bot. PMID: 27234228. 2016 Jul;103(7):1146-66. doi: 10.3732/ajb.1500501. Epub 2016 May 27.2.811
Soltis PS, Soltis DE. Ancient WGD events as drivers of key innovations in angiosperms. Curr Opin Plant Biol. PMID: 27064530. 2016 Apr;30:159-65. doi: 10.1016/j.pbi.2016.03.015. Epub 2016 Apr 8. 6.78
Hodel RG, Cortez MB, Soltis PS, Soltis DE. Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants. Am J Bot. PMID: 27056925. 2016 Apr;103(4):730-9. doi: 10.3732/ajb.1500260. Epub 2016 Apr 7.2.811
Chanderbali AS, Berger BA, Howarth DG, Soltis PS, Soltis DE. Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era. Genetics. PMID: 27053123. 2016 Apr;202(4):1255-65. doi: 10.1534/genetics.115.182964. 4.644
Soltis DE, Misra BB, Shan S, Chen S, Soltis PS. Polyploidy and the proteome. Biochim Biophys Acta. PMID: 26993527. 2016 Aug;1864(8):896-907. doi: 10.1016/j.bbapap.2016.03.010. Epub 2016 Mar 16. 5.34
Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA. Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae). Appl Plant Sci. PMID: 26949579. 2016 Feb 15;4(2). pii: apps.1500115. doi: 10.3732/apps.1500115. eCollection 2016 Feb.0.911
Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS. The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. Front Plant Sci. PMID: 26779209. 2016 Jan 5;6:1144. doi: 10.3389/fpls.2015.01144. eCollection 2015. 4.495
Sun Y, Moore MJ, Zhang S, Soltis PS, Soltis DE, Zhao T, Meng A, Li X, Li J, Wang H. Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution. Mol Phylogenet Evol. PMID: 26724406. 2016 Mar;96:93-101. doi: 10.1016/j.ympev.2015.12.006. Epub 2015 Dec 24.3.792
Matyášek R, Dobešová E, Húska D, Ježková I, Soltis PS, Soltis DE, Kovařík A. Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus. Plant J. PMID: 26711705. 2016 Feb;85(3):362-77. doi: 10.1111/tpj.13110.5.468
Soltis PS, Marchant DB, Van de Peer Y, Soltis DE. Polyploidy and genome evolution in plants. Curr Opin Genet Dev. PMID: 26656231. 2015 Dec;35:119-25. doi: 10.1016/j.gde.2015.11.003. Epub 2015 Dec 2. 5.784
Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA. Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids. PLoS One. PMID: 26646761. 2015 Dec 8;10(12):e0144339. doi: 10.1371/journal.pone.0144339. eCollection 2015. 3.057
Stull GW, Duno de Stefano R, Soltis DE, Soltis PS. Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set. Am J Bot. PMID: 26507112. 2015 Nov;102(11):1794-813. doi: 10.3732/ajb.1500298. Epub 2015 Oct 27.2.811
Nelson G, Sweeney P, Wallace LE, Rabeler RK, Allard D, Brown H, Carter JR, Denslow MW, Ellwood ER, Germain-Aubrey CC, Gilbert E, Gillespie E, Goertzen LR, Legler B, Marchant DB, Marsico TD, Morris AB, Murrell Z, Nazaire M, Neefus C, Oberreiter S, Paul D, Ruhfel BR, Sasek T, Shaw J, Soltis PS, Watson K, Weeks A, Mast AR. Digitization workflows for flat sheets and packets of plants, algae, and fungi. Appl Plant Sci. PMID: 26421256. 2015 Sep 10;3(9). pii: apps.1500065. doi: 10.3732/apps.1500065. eCollection 2015 Sep. 0.911
Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW. Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining. J Proteome Res. PMID: 26399495. 2015 Nov 6;14(11):4851-62. doi: 10.1021/acs.jproteome.5b00681. Epub 2015 Oct 8.4.173
Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD 4th, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proc Natl Acad Sci U S A. PMID: 26385966. 2015 Oct 13;112(41):12764-9. doi: 10.1073/pnas.1423041112. Epub 2015 Sep 18. 9.423
Li HL, Wang W, Mortimer PE, Li RQ, Li DZ, Hyde KD, Xu JC, Soltis DE, Chen ZD. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Sci Rep. PMID: 26354898. 2015 Sep 10;5:14023. doi: 10.1038/srep14023. 5.228
Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP. An Exploration into Fern Genome Space. Genome Biol Evol. PMID: 26311176. 2015 Aug 26;7(9):2533-44. doi: 10.1093/gbe/evv163. 4.098
Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN Jr, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, Chen L, Wei X, Sun X, Korall P, Stevenson DW, Graham SW, Wong GK, Pryer KM. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. Am J Bot. PMID: 26199366. 2015 Jul;102(7):1089-107. doi: 10.3732/ajb.1500089. Epub 2015 Jul 16. 2.811
Matthews A, Emelianova K, Hatimy AA, Chester M, Pellicer J, Ahmad KS, Guignard MS, Rouhan G, Soltis DE, Soltis PS, Leitch IJ, Leitch AR, Mavrodiev EV, Buggs RJ. AoB Plants. PMID: 26187604. 2015 Jul 17;7. pii: plv081. doi: 10.1093/aobpla/plv081. 2.079
Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ. Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. New Phytol. PMID: 26053261. 2015 Jul;207(2):454-67. doi: 10.1111/nph.13491. Epub 2015 Jun 4. 7.21
Chanderbali AS, He F, Soltis PS, Soltis DE. Out of the Water: Origin and Diversification of the LBD Gene Family. Mol Biol Evol. PMID: 25839188. 2015 Aug;32(8):1996-2000. doi: 10.1093/molbev/msv080. Epub 2015 Apr 2. 13.649
Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Mol Biol Evol. PMID: 25837578. 2015 Aug;32(8):2001-14. doi: 10.1093/molbev/msv081. Epub 2015 Apr 2. 13.649
Studneva М, Mandrik M, Song Sh, Tretyak E, Krasnyuk I, Yamada Y, Tukavin A, Ansari A, Kozlov I, Reading C, Ma Y, Krapfenbauer K, Svistunov A, Suchkov S. Strategic aspects of higher education reform to cultivate specialists in diagnostic and biopharma industry as applicable to Predictive, Preventive and Personalized Medicine as the Medicine of the Future. EPMA J. PMID: 26379805. 2015 Sep 15;6(1):18. doi: 10.1186/s13167-015-0040-4. eCollection 2015.0.49
Rosario AM, Cruz PE, Ceballos-Diaz C, Strickland MR, Siemienski Z, Pardo M, Schob KL, Li A, Aslanidi GV, Srivastava A, Golde TE, Chakrabarty P. Microglia-specific targeting by novel capsid-modified AAV6 vectors. Mol Ther Methods Clin Dev. PMID: 27308302. 2016 Apr 13;3:16026. doi: 10.1038/mtm.2016.26. eCollection 2016. N/A
Ling C, Yin Z, Li J, Zhang D, Aslanidi G, Srivastava A. Strategies to generate high-titer, high-potency recombinant AAV3 serotype vectors. Mol Ther Methods Clin Dev. PMID: 27200382. 2016 May 4;3:16029. doi: 10.1038/mtm.2016.29. eCollection 2016. N/A
Vercauteren K, Hoffman BE, Zolotukhin I, Keeler GD, Xiao JW, Basner-Tschakarjan E, High KA, Ertl HC, Rice CM, Srivastava A, de Jong YP, Herzog RW. Superior In vivo Transduction of Human Hepatocytes Using Engineered AAV3 Capsid. Mol Ther. PMID: 27019999. 2016 Jun;24(6):1042-9. doi: 10.1038/mt.2016.61. Epub 2016 Mar 29.6.938
Ling C, Wang Y, Lu Y, Wang L, Jayandharan GR, Aslanidi GV, Li B, Cheng B, Ma W, Lentz T, Ling C, Xiao X, Samulski RJ, Muzyczka N, Srivastava A. The Adeno-Associated Virus Genome Packaging Puzzle. J Mol Genet Med. PMID: 26949410. 2015 Aug;9(3). pii: 175. Epub 2015 Jul 15.0.35
Srivastava A. Adeno-Associated Virus: The Naturally Occurring Virus Versus the Recombinant Vector. Hum Gene Ther. PMID: 26784640. 2016 Jan;27(1):1-6. doi: 10.1089/hum.2015.29017.asr. 4.062
Li B, Ma W, Ling C, Van Vliet K, Huang LY, Agbandje-McKenna M, Srivastava A, Aslanidi GV. Site-Directed Mutagenesis of Surface-Exposed Lysine Residues Leads to Improved Transduction by AAV2, But Not AAV8, Vectors in Murine Hepatocytes In Vivo. Hum Gene Ther Methods. PMID: 26421998. 2015 Dec;26(6):211-20. doi: 10.1089/hgtb.2015.115. Epub 2015 Oct 27.1.986
Li S, Ling C, Zhong L, Li M, Su Q, He R, Tang Q, Greiner DL, Shultz LD, Brehm MA, Flotte TR, Mueller C, Srivastava A, Gao G. Mol Ther. PMID: 26403887. 2015 Dec;23(12):1867-76. doi: 10.1038/mt.2015.174. Epub 2015 Sep 25.6.938
Ling C, Wang Y, Feng YL, Zhang YN, Li J, Hu XR, Wang LN, Zhong MF, Zhai XF, Zolotukhin I, Srivastava A, Ling CQ. Prevalence of neutralizing antibodies against liver-tropic adeno-associated virus serotype vectors in 100 healthy Chinese and its potential relation to body constitutions. J Integr Med. PMID: 26343106. 2015 Sep;13(5):341-6. doi: 10.1016/S2095-4964(15)60200-X.1.234
Wang L, Yin Z, Wang Y, Lu Y, Zhang D, Srivastava A, Ling C, Aslanidi GV, Ling C. Productive life cycle of adeno-associated virus serotype 2 in the complete absence of a conventional polyadenylation signal. J Gen Virol. PMID: 26297494. 2015 Sep;96(9):2780-7. doi: 10.1099/jgv.0.000229. Epub 2015 Jun 30.3.192
Coram RJ, Stillwagon SJ, Guggilam A, Jenkins MW, Swanson MS, Ladd AN. Muscleblind-like 1 is required for normal heart valve development in vivo. BMC Dev Biol. PMID: 26472242. 2015 Oct 15;15:36. doi: 10.1186/s12861-015-0087-4.2.096
Goodwin M, Mohan A, Batra R, Lee KY, Charizanis K, Fernández Gómez FJ, Eddarkaoui S, Sergeant N, Buée L, Kimura T, Clark HB, Dalton J, Takamura K, Weyn-Vanhentenryck SM, Zhang C, Reid T, Ranum LP, Day JW, Swanson MS. MBNL Sequestration by Toxic RNAs and RNA Misprocessing in the Myotonic Dystrophy Brain. Cell Rep. PMID: 26257173. Aug 18;12(7):1159-68. doi: 10.1016/j.celrep.2015.07.029. Epub 2015 Aug 6.7.87
Day JF, Tabachnick WJ, Smartt CT. Factors That Influence the Transmission of West Nile Virus in Florida. J Med Entomol. PMID: 26336216. 2015 Sep;52(5):743-54. doi: 10.1093/jme/tjv076. Epub 2015 Jul 1.1.712
Meyer JL, Rodgers JM, Dillard BA, Paul VJ, Teplitski M. Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome. Front Microbiol. PMID: 27375605. 2016 Jun 7;7:893. doi: 10.3389/fmicb.2016.00893. eCollection 2016.4.165
de Moraes MH, Chapin TK, Ginn A, Wright AC, Parker K, Hoffman C, Pascual DW, Danyluk MD,Teplitski M. Development of an Avirulent Salmonella Surrogate for Modeling Pathogen Behavior in Pre- and Postharvest Environments. Appl Environ Microbiol. PMID: 27129962. 2016 Jun 30;82(14):4100-11. doi: 10.1128/AEM.00898-16. Print 2016 Jul 15.3.823
Marvasi M, Choudhury M, Teplitski M. Laboratory Activity to Teach about the Proliferation of Salmonella in Vegetables. J Microbiol Biol Educ. PMID: 26753031. 2015 Dec 1;16(2):230-6. doi: 10.1128/jmbe.v16i2.948. eCollection 2015 Dec. 0.3
George AS, Salas González I, Lorca GL, Teplitski M. Contribution of the Salmonella enterica KdgR Regulon to Persistence of the Pathogen in Vegetable Soft Rots. Appl Environ Microbiol. PMID: 26682862. 2015 Dec 18;82(4):1353-60. doi: 10.1128/AEM.03355-15.3.823
Cox CE, Wright AC, McClelland M, Teplitski M. Influence of Salmonella enterica Serovar Typhimurium ssrB on Colonization of Eastern Oysters (Crassostrea virginica) as Revealed by a Promoter Probe Screen. Appl Environ Microbiol. PMID: 26497459. 2015 Oct 23;82(1):328-39. doi: 10.1128/AEM.02870-15.3.823
Meyer JL, Dillard BA, Rodgers JM, Ritchie KB, Paul VJ, Teplitski M. Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata. Stand Genomic Sci. PMID: 26451236. 2015 Oct 7;10:75. doi: 10.1186/s40793-015-0069-y. eCollection 2015.1.594
de Moraes MH, Teplitski M. Fast and efficient three-step target-specific curing of a virulence plasmid in Salmonella enterica. AMB Express. PMID: 26272479. 2015 Dec;5(1):139. doi: 10.1186/s13568-015-0139-y. Epub 2015 Aug 14.2.167
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