UFGI Publication round-up week 5/11/20

11 May 2020

Enteral Nutrition Administration Record (ENAR) Prescribing Process Using Computerized Order Entry: A New Paradigm and Opportunities to Improve Outcomes in the Critically Ill.

Kamel AY, Rosenthal MD, Citty SW, Marlowe BL, Garvan CS, Westhoff L, Marker PS, Croft CA, Brakenridge SC, Efron PA, Mohr A, Moore FA.

JPEN J Parenter Enteral Nutr. 2020 May 8. doi: 10.1002/jpen.1870. [Epub ahead of print]

PMID: 32384191

Phenotypic heterogeneity by site of infection in surgical sepsis: a prospective longitudinal study.

Stortz JA, Cox MC, Hawkins RB, Ghita GL, Brumback BA, Mohr AM, Moldawer LL, Efron PA, Brakenridge SC, Moore FA.

Crit Care. 2020 May 7;24(1):203. doi: 10.1186/s13054-020-02917-3.

PMID: 32381107

Obesity and STING1 genotype associate with 23-valent pneumococcal vaccination efficacy.

Sebastian M, Hsiao CJ, Futch HS, Eisinger RS, Dumeny L, Patel S, Gobena M, Katikaneni DS, Cohen J, Carpenter AM, Spiryda L, Heldermon CD, Jin L, Brantly ML.

JCI Insight. 2020 May 7;5(9). pii: 136141. doi: 10.1172/jci.insight.136141.

PMID: 32376795

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.

Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M.

Proc Natl Acad Sci U S A. 2020 May 7. pii: 202007295. doi: 10.1073/pnas.2007295117. [Epub ahead of print] No abstract available.

PMID: 32381734

Associations of reproductive indices with fertility outcomes, milk yield, and survival in Holstein cows.

Pinedo P, Santos JEP, Chebel RC, Galvão KN, Schuenemann GM, Bicalho RC, Gilbert RO, Rodriguez-Zas SL, Seabury CM, Rosa G, Thatcher W.

J Dairy Sci. 2020 Apr 29. pii: S0022-0302(20)30335-0. doi: 10.3168/jds.2019-17867. [Epub ahead of print]

PMID: 32359989

Medical Ethics Issues in Dementia and End of Life.

Allen W.

Curr Psychiatry Rep. 2020 May 9;22(6):31. doi: 10.1007/s11920-020-01150-7. Review.

PMID: 32388736

Whole-genome homozygosity mapping reveals candidate regions affecting bull fertility in US Holstein cattle.

Nani JP, Peñagaricano F.

BMC Genomics. 2020 May 4;21(1):338. doi: 10.1186/s12864-020-6758-y.

PMID: 32366228

Genetic dissection of reproductive performance of dairy cows under heat stress.

Sigdel A, Liu L, Abdollahi-Arpanahi R, Aguilar I, Peñagaricano F.

Anim Genet. 2020 May 3. doi: 10.1111/age.12943. [Epub ahead of print]

PMID: 32363588

Redox and Thiols in Archaea.

Rawat M, Maupin-Furlow JA.

Antioxidants (Basel). 2020 May 5;9(5). pii: E381. doi: 10.3390/antiox9050381. Review.

PMID: 32380716

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.

Proc Natl Acad Sci U S A. 2020 May 7. pii: 202007295. doi: 10.1073/pnas.2007295117. [Epub ahead of print] No abstract available.

PMID: 32381734

Machine learning on genome-wide association studies to predict the risk of radiation-associated contralateral breast cancer in the WECARE Study.

Lee S, Liang X, Woods M, Reiner AS, Concannon P, Bernstein L, Lynch CF, Boice JD, Deasy JO, Bernstein JL, Oh JH.

PLoS One. 2020 Feb 27;15(2):e0226157. doi: 10.1371/journal.pone.0226157. eCollection 2020.

PMID: 32106268

Ceftriaxone and mGlu2/3 interactions in the nucleus accumbens core affect the reinstatement of cocaine-seeking in male and female rats.

Logan CN, Bechard AR, Hamor PU, Wu L, Schwendt M, Knackstedt LA.

Psychopharmacology (Berl). 2020 May 7. doi: 10.1007/s00213-020-05514-y. [Epub ahead of print]

PMID: 32382781

Epigenetic factor siRNA screen during primary KSHV infection identifies novel host restriction factors for the lytic cycle of KSHV.

Naik NG, Nguyen TH, Roberts L, Fischer LT, Glickman K, Golas G, Papp B, Toth Z.

PLoS Pathog. 2020 Jan 10;16(1):e1008268. doi: 10.1371/journal.ppat.1008268. eCollection 2020 Jan.

PMID: 31923286

Genetic relationships and polyploid origins in the Lippia alba complex.

Lopes JML, de Carvalho HH, Zorzatto C, Azevedo ALS, Machado MA, Salimena FRG, Grazul RM, Gitzendanner MA, Soltis DE, Soltis PS, Viccini LF.

Am J Bot. 2020 Mar;107(3):466-476. doi: 10.1002/ajb2.1443. Epub 2020 Mar 1.

PMID: 32115694

Mapping of neuropeptide Y expression in Octopus brains.

Winters GC, Polese G, Di Cosmo A, Moroz LL.

J Morphol. 2020 May 8. doi: 10.1002/jmor.21141. [Epub ahead of print]

PMID: 32384206

Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities.

Dragon JA, Gates C, Sui SH, Hutchinson JN, Karuturi RKM, Kucukural A, Polson S, Riva A, Settles ML, Thimmapuram J, Levine SS.

J Biomol Tech. 2020 Apr 29. pii: jbt.20-3102-005. doi: 10.7171/jbt.20-3102-005. [Epub ahead of print]

PMID: 32382253

Asian Zika Virus Isolate Significantly Changes the Transcriptional Profile and Alternative RNA Splicing Events in a Neuroblastoma Cell Line.

Bonenfant G, Meng R, Shotwell C, Badu P, Payne AF, Ciota AT, Sammons MA, Berglund JA, Pager CT.

Viruses. 2020 May 5;12(5). pii: E510. doi: 10.3390/v12050510.

PMID: 32380717

Recommendations for Clinical Warfarin Sensitivity Genotyping Allele Selection: A Report of the Association for Molecular Pathology and College of American Pathologists.

Pratt VM, Cavallari LH, Del Tredici AL, Hachad H, Ji Y, Kalman LV, Ly RC, Moyer AM, Scott SA, Whirl-Carrillo M, Weck KE.

J Mol Diagn. 2020 May 4. pii: S1525-1578(20)30298-1. doi: 10.1016/j.jmoldx.2020.04.204. [Epub ahead of print] Review.

PMID: 32380173

Calculated initial parenteral treatment of bacterial infections: Pharmacokinetics and pharmacodynamics.

Derendorf H, Heinrichs T, Reimers T, Lebert C, Brinkmann A.

GMS Infect Dis. 2020 Mar 26;8:Doc17. doi: 10.3205/id000061. eCollection 2020.

PMID: 32373442

Delta-like Protein 3 Expression and Targeting in Merkel Cell Carcinoma.

Xie H, Kaye FJ, Isse K, Sun Y, Ramoth J, French DM, Flotte TJ, Luo Y, Saunders LR, Mansfield AS.

Oncologist. 2020 May 5. doi: 10.1634/theoncologist.2019-0877. [Epub ahead of print]

PMID: 32372416

miRNA-1-3p is an early embryonic male sex-determining factor in the Oriental fruit fly Bactrocera dorsalis.

Peng W, Yu S, Handler AM, Tu Z, Saccone G, Xi Z, Zhang H.

Nat Commun. 2020 Feb 18;11(1):932. doi: 10.1038/s41467-020-14622-4.

PMID: 32071305

The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization.

Moreland RT, Nguyen AD, Ryan JF, Baxevanis AD.

Database (Oxford). 2020 Jan 1;2020. pii: baaa029. doi: 10.1093/database/baaa029.

PMID: 32386298

Comparative iTRAQ proteomic profiling of sweet orange fruit on sensitive and tolerant rootstocks infected by ‘Candidatus Liberibacter asiaticus’.

Yao L, Yu Q, Huang M, Song Z, Grosser J, Chen S, Wang Y, Gmitter FG Jr.

PLoS One. 2020 Feb 14;15(2):e0228876. doi: 10.1371/journal.pone.0228876. eCollection 2020.

PMID: 32059041

Alterations in mouse spinal cord and sciatic nerve microRNAs after the chronic constriction injury (CCI) model of neuropathic pain.

Wilkerson JL, Jiang J, Felix JS, Bray JK, da Silva L, Gharaibeh RZ, McMahon LR, Schmittgen TD.

Neurosci Lett. 2020 May 4:135029. doi: 10.1016/j.neulet.2020.135029. [Epub ahead of print]

PMID: 32380144