UFGI Publication Round-up: Week of 7/22/24

Hoorn QA, Rabaglino MB, Amaral TF, Maia TS, Yu F, Cole JB, Hansen PJ.

Biol Reprod. 2024 Jul 12;111(1):54-62. doi: 10.1093/biolre/ioae052.

PMID: 38590174

Xanthomonas as a Model System for Studying Pathogen Emergence and Evolution.

Timilsina S, Kaur A, Sharma A, Ramamoorthy S, Vallad GE, Wang N, White FF, Potnis N, Goss EM, Jones JB.

Phytopathology. 2024 Jul;114(7):1433-1446. doi: 10.1094/PHYTO-03-24-0084-RVW. Epub 2024 Jul 5.

PMID: 38648116

TRANSCRIPTOMIC DIFFERENCES IN PERIPHERAL MONOCYTE POPULATIONS IN SEPTIC PATIENTS BASED ON OUTCOME.

Barrios EL, Rincon JC, Willis M, Polcz VE, Leary JR, Darden DB, Balch JA, Larson SD, Loftus TJ, Mohr AM, Wallet S, Brusko MA, Balzano-Nogueira L, Cai G, Sharma A, Upchurch GR Jr, Kladde MP, Mathews CE, Maile R, Moldawer LL, Bacher R, Efron PA.

Shock. 2024 Aug 1;62(2):208-216. doi: 10.1097/SHK.0000000000002379. Epub 2024 May 2.

PMID: 38713581

tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa.

Sun J, Wu J, Yuan Y, Fan L, Chua WLP, Ling YHS, Balamkundu S, Priya D, Suen HCS, de Crécy-Lagard V, Dziergowska A, Dedon PC.

bioRxiv [Preprint]. 2024 Jul 2:2024.07.01.601603. doi: 10.1101/2024.07.01.601603.

PMID: 39005467

Evaluating the Effect of Estimating Renal Function With the CKD-EPI 2021 Equation on the ABCD-GENE Score for Clopidogrel Response Prediction.

AlSaeed MJ, Thomas CD, Franchi F, Keeley EC, Duarte JD, Gong Y, Rossi JS, Beitelshees AL, Stouffer GA, Lee CR, Angiolillo DJ, Cavallari LH.

Clin Pharmacol Ther. 2024 Jul 19. doi: 10.1002/cpt.3385. Online ahead of print.

PMID: 39031256

Greater aperture counteracts effects of reduced stomatal density on WUE: a case study on sugarcane and meta-analysis.

Lunn D, Kannan B, Germon A, Leverett A, Clemente TE, Altpeter F, Leakey ADB.

J Exp Bot. 2024 Jul 18:erae271. doi: 10.1093/jxb/erae271. Online ahead of print.

PMID: 39021256

Innate Immune Sensing of Adeno-Associated Virus Vectors.

Cao D, Byrne BJ, de Jong YP, Terhorst C, Duan D, Herzog RW, Kumar SRP.

Hum Gene Ther. 2024 Jul;35(13-14):451-463. doi: 10.1089/hum.2024.040. Epub 2024 Jul 5.

PMID: 38887999

Gene expression patterns associated with PFOA exposure in Czech young men and women.

Rudzanova B, Thon V, Vespalcova H, Martyniuk CJ, Piler P, Zvonar M, Klanova J, Blaha L, Adamovsky O.

Environ Int. 2024 Jul 11;190:108879. doi: 10.1016/j.envint.2024.108879. Online ahead of print.

PMID: 39008919

Sirenian (manatees and dugongs) reproductive endocrinology.

Brammer-Robbins E, Cowart JR, Calderon M, Burgess EA, Larkin IV, Martyniuk CJ.

Gen Comp Endocrinol. 2024 Sep 15;356:114575. doi: 10.1016/j.ygcen.2024.114575. Epub 2024 Jun 20.

PMID: 38908455

Environmental presence and toxicological outcomes of the herbicide pendimethalin in teleost fish.

Ivantsova E, Martyniuk CJ.

Ecotoxicology. 2024 Aug;33(6):531-545. doi: 10.1007/s10646-024-02767-7. Epub 2024 Jun 19.

PMID: 38896413 38857774

Neurotoxic and cardiotoxic effects of pyrogallol on catfish (Clarias gariepinus).

Hamed M, Martyniuk CJ, Soliman HAM, Osman AGM, Said REM.

Environ Toxicol Pharmacol. 2024 Aug;109:104481. doi: 10.1016/j.etap.2024.104481. Epub 2024 Jun 8.

PMID: 38857774

Functional analysis of ctenophore Shaker K⁺ channels: N-type inactivation in the animal roots.

Simonson BT, Jegla M, Ryan JF, Jegla T.

Biophys J. 2024 Jul 16;123(14):2038-2049. doi: 10.1016/j.bpj.2024.01.027. Epub 2024 Jan 30.

PMID: 38291751

High-density resolution of the Kaposi’s sarcoma associated herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing.

Shekhar R, O’Grady T, Keil N, Feswick A, Amador DAM, Tibbetts SA, Flemington EK, Renne R.

Nucleic Acids Res. 2024 Jul 22;52(13):7720-7739. doi: 10.1093/nar/gkae540.

PMID: 38922687

Functional metagenomic analysis reveals potential inflammatory triggers associated with genetic risk for autoimmune disease.

Berryman MA, Ilonen J, Triplett EW, Ludvigsson J.

J Autoimmun. 2024 Jul 20;148:103290. doi: 10.1016/j.jaut.2024.103290. Online ahead of print.

PMID: 39033688

Unsupervised Exercise in Interstitial Lung Disease: A Delphi Study to Develop a Consensus Preparticipation Screening Tool for Lymphangioleiomyomatosis.

Child CE, Ho LA, Lachant D, Gupta N, Moss J, Jones A, Krishna R, Holland AE, Han MK, McCarthy C, Ataya A, Baqir M, Dilling D, Swigris J, Swenson ER, Brown MB.

Chest. 2024 Jul 16:S0012-3692(24)04613-0. doi: 10.1016/j.chest.2024.06.3803. Online ahead of print.

PMID: 39025205

Skeletal muscle BMAL1 is necessary for transcriptional adaptation of local and peripheral tissues in response to endurance exercise training.

Viggars MR, Berko HE, Hesketh SJ, Wolff CA, Gutierrez-Monreal MA, Martin RA, Jennings IG, Huo Z, Esser KA.

Mol Metab. 2024 Aug;86:101980. doi: 10.1016/j.molmet.2024.101980. Epub 2024 Jun 29.

PMID: 38950777

DPYD Genotyping Recommendations: A Joint Consensus Recommendation of the Association for Molecular Pathology, American College of Medical Genetics and Genomics, Clinical Pharmacogenetics Implementation Consortium, College of American Pathologists, Dutch Pharmacogenetics Working Group of the Royal Dutch Pharmacists Association, European Society for Pharmacogenomics and Personalized Therapy, Pharmacogenomics Knowledgebase, and Pharmacogene Variation Consortium.

Pratt VM, Cavallari LH, Fulmer ML, Gaedigk A, Hachad H, Ji Y, Kalman LV, Ly RC, Moyer AM, Scott SA, Turner AJ, van Schaik RHN, Whirl-Carrillo M, Weck KE.

J Mol Diagn. 2024 Jul 18:S1525-1578(24)00154-5. doi: 10.1016/j.jmoldx.2024.05.015. Online ahead of print.

PMID: 39032821

De Novo Long-Read Genome Assembly and Annotation of the Luna Moth (Actias luna) Fully Resolves Repeat-Rich Silk Genes.

Markee A, Godfrey RK, Frandsen PB, Weng YM, Triant DA, Kawahara AY.

Genome Biol Evol. 2024 Jul 3;16(7):evae148. doi: 10.1093/gbe/evae148.

PMID: 38957923

The underground world of plant disease: Rhizosphere dysbiosis reduces above-ground plant resistance to bacterial leaf spot and alters plant transcriptome.

Ketehouli T, Pasche J, Buttrós VH, Goss EM, Martins SJ.

Environ Microbiol. 2024 Jul;26(7):e16676. doi: 10.1111/1462-2920.16676.

PMID: 39010309

In silico generation and augmentation of regulatory variants from massively parallel reporter assay using conditional variational autoencoder.

Jin W, Xia Y, Thela SR, Liu Y, Chen L.

bioRxiv [Preprint]. 2024 Jun 29:2024.06.25.600715. doi: 10.1101/2024.06.25.600715.

PMID: 38979263

NSD2 drives t(4;14) myeloma cell dependence on adenylate kinase 2 by diverting one-carbon metabolism to the epigenome.

Sobh A, Encinas E, Patel A, Surapaneni G, Bonilla E, Kaestner C, Poullard J, Clerio M, Vasan K, Freeman T, Lv D, Dupéré-Richer D, Riva A, Barwick BG, Zhou D, Boise LH, Mitsiades CS, Kim B, Bennett RL, Chandel NS, Licht JD.

Blood. 2024 Jul 18;144(3):283-295. doi: 10.1182/blood.2023022859.

PMID: 38598835

In vitro culture alters cell lineage composition and cellular metabolism of bovine blastocyst†.

Ming H, Zhang M, Rajput S, Logsdon D, Zhu L, Schoolcraft WB, Krisher RL, Jiang Z, Yuan Y.

Biol Reprod. 2024 Jul 12;111(1):11-27. doi: 10.1093/biolre/ioae031.

PMID: 38408205

Charting the course for improved outcomes in chronic critical illness: therapeutic strategies for persistent inflammation, immunosuppression, and catabolism syndrome (PICS).

Polcz VE, Barrios EL, Larson SD, Efron PA, Rincon JC.

Br J Anaesth. 2024 Aug;133(2):260-263. doi: 10.1016/j.bja.2024.05.005. Epub 2024 Jun 19.

PMID: 38902117

Current updates in precision and personalized medicine in sepsis and trauma.

Drury SK, Wallet SM, Maile R, Efron PA, Mohr AM, Bible L.

Surgery. 2024 Aug;176(2):541-543. doi: 10.1016/j.surg.2024.03.048. Epub 2024 May 17.

PMID: 38760231

TEMPORAL CHANGES IN INNATE AND ADAPTIVE IMMUNITY DURING SEPSIS AS DETERMINED BY ELISPOT.

Unsinger J, Osborne D, Walton AH, Han E, Sheets L, Mazer MB, Remy KE, Griffith TS, Rao M, Badovinac VP, Brakenridge SC, Turnbull I, Efron PA, Moldawer LL, Caldwell CC, Hotchkiss RS.

Shock. 2024 Aug 1;62(2):255-264. doi: 10.1097/SHK.0000000000002377. Epub 2024 May 3.

PMID: 38754032

Plasma p-tau217 concordance with amyloid PET among ethnically diverse older adults.

Asken BM, DeSimone JC, Wang WE, McFarland KN, Arias F, Levy SA, Fiala J, Velez-Uribe I, Mayrand RP, Sawada LO, Freytes C, Adeyosoye M, Barker WW, Crocco EA, DeKosky ST, Adjouadi M, Rosselli M, Marsiske M, Armstrong MJ, Smith GE, Cid RC, Loewenstein DA, Vaillancourt DE, Duara R.

Alzheimers Dement (Amst). 2024 Jul 17;16(3):e12617. doi: 10.1002/dad2.12617. eCollection 2024 Jul-Sep.

PMID: 39021585