UFGI Publication round-up week 2/5/19

A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways.

Zhao D, Hamilton JP, Bhat WW, Johnson SR, Godden GT, Kinser TJ, Boachon B, Dudareva N, Soltis DE, Soltis PS, Hamberger B, Buell CR.

Gigascience. 2019 Jan 30. doi: 10.1093/gigascience/giz005. [Epub ahead of print]

PMID: 30698701

 

Scaffolding adapter protein Gab1 impairs bFGF-induced bio-activity via affecting PI3K-AKT pathway.

Zhang JC, Li WX, Wu L, Liu X, Zhang L.

J Biol Regul Homeost Agents. 2019 Jan 30;33(1). [Epub ahead of print]

PMID: 30697991

 

Exome re-sequencing reveals evolutionary history, genomic diversity, and targets of selection in the conifers Pinus taeda and Pinus elliottii.

Acosta JJ, Fahrenkrog AM, Neves LG, Resende MFR Jr, Dervinis C, Davis JM, Holliday JA, Kirst M.

Genome Biol Evol. 2019 Jan 28. doi: 10.1093/gbe/evz016. [Epub ahead of print]

PMID: 30689841

 

Rationally designed small molecules to prevent type 1 diabetes.

Ostrov DA, Gottlieb PA, Michels AW.

Curr Opin Endocrinol Diabetes Obes. 2019 Jan 28. doi: 10.1097/MED.0000000000000470. [Epub ahead of print]

PMID: 30694829

Identification of a pathogenic mutation in ATP2A1 via in silico analysis of exome data for cryptic aberrant splice sites.

Bruels CC, Li C, Mendoza T, Khan J, Reddy HM, Estrella EA, Ghosh PS, Darras BT, Lidov HGW, Pacak CA, Kunkel LM, Modave F, Draper I, Kang PB.

Mol Genet Genomic Med. 2019 Jan 28:e552. doi: 10.1002/mgg3.552. [Epub ahead of print]

PMID: 30688039

 

The potential of treating Gulf War Illness with curcumin.

Leibowitz JA, Ormerod BK.

Brain Behav Immun. 2018 May;70:3-4. doi: 10.1016/j.bbi.2018.03.017. Epub 2018 Mar 13.

PMID: 29548999

Arthritis Gene Therapy Approved in Korea.

Evans CH, Ghivizzani SC, Robbins PD.

J Am Acad Orthop Surg. 2018 Jan 15;26(2):e36-e38. doi: 10.5435/JAAOS-D-17-00695. No abstract available.

PMID: 29303924

 

Gene Delivery to Joints by Intra-Articular Injection.

Evans CH, Ghivizzani SC, Robbins PD.

Hum Gene Ther. 2018 Jan;29(1):2-14. doi: 10.1089/hum.2017.181. Review.

PMID: 29160173

Aligning Optical Maps to De Bruijn Graphs.

Mukherjee K, Alipanahi B, Kahveci T, Salmela L, Boucher C.

Bioinformatics. 2019 Jan 30. doi: 10.1093/bioinformatics/btz069. [Epub ahead of print]

PMID: 30698651

 

Development and validation of a dynamic inpatient risk prediction model for clinically significant hypokalemia using electronic health record data.

Zhao M, Chen Y, Wang C, Xiao W, Chen S, Zhang S, Yang L, Li Y.

Front Pharmacol. 2019 Jan 11;9:1448. doi: 10.3389/fphar.2018.01448. eCollection 2018.

PMID: 30687082

 

EyeChrom and CCDBcurator: Visualizing chromosome count data from plants.

Rivero R, Sessa EB, Zenil-Ferguson R.

Appl Plant Sci. 2019 Jan 4;7(1):e01207. doi: 10.1002/aps3.1207. eCollection 2019 Jan.

PMID: 30693153

 

Metagenomic analysis of basal ice from an Alaskan glacier.

Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF.

Microbiome. 2018 Jul 5;6(1):123. doi: 10.1186/s40168-018-0505-5.

PMID: 29976249

 

Co-Delivery of a Short-Hairpin RNA and a shRNA-Resistant Replacement Gene with Adeno-Associated Virus: An Allele-Independent Strategy for Autosomal-Dominant Retinal Disorders.

Massengill MT, Young BM, Lewin AS, Ildefonso CJ.

Methods Mol Biol. 2019;1937:235-258. doi: 10.1007/978-1-4939-9065-8_15.

PMID: 30706401

 

Multidisciplinary Care for Critical Limb Ischemia: Current Gaps and Opportunities for Improvement.

Armstrong EJ, Alam S, Henao S, Lee AC, DeRubertis BG, Montero-Baker M, Mena C, Cua B, Palena LM, Kovach R, Chandra V, AlMahameed A, Walker CM.

J Endovasc Ther. 2019 Feb 1:1526602819826593. doi: 10.1177/1526602819826593. [Epub ahead of print]

PMID: 30706755

 

A model of clinical endometritis in Holstein heifers using pathogenic Escherichia coli and Trueperella pyogenes.

Piersanti RL, Zimpel R, Molinari PCC, Dickson MJ, Ma Z, Jeong KC, Santos JEP, Sheldon IM, Bromfield JJ.

J Dairy Sci. 2019 Jan 25. pii: S0022-0302(19)30089-X. doi: 10.3168/jds.2018-15595. [Epub ahead of print]

PMID: 30692014

A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation.

Sng NJ, Kolaczkowski B, Ferl RJ, Paul AL.

AoB Plants. 2018 Dec 15;11(1):ply075. doi: 10.1093/aobpla/ply075. eCollection 2019 Feb.

PMID: 30705745

 

Prospective Validation of a Transcriptomic Metric in Severe Trauma.

Raymond SL, Hawkins RB, Wang Z, Mira JC, Stortz JA, Han F, Lanz JD, Hennessy LV, Brumback BA, Baker HV, Efron PA, Brakenridge SC, Xiao W, Tompkins RG, Cuschieri J, Moore FA, Maier RV, Moldawer LL.

Ann Surg. 2019 Jan 24. doi: 10.1097/SLA.0000000000003204.

PMID: 30688688

 

A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation.

Sng NJ, Kolaczkowski B, Ferl RJ, Paul AL.

AoB Plants. 2018 Dec 15;11(1):ply075. doi: 10.1093/aobpla/ply075. eCollection 2019 Feb.

PMID: 30705745

 

Systems Pharmacology Dissection of Multi-Scale Mechanisms of Action of Huo-Xiang-Zheng-QiFormula for the Treatment of Gastrointestinal Diseases.

Zhao M, Chen Y, Wang C, Xiao W, Chen S, Zhang S, Yang L, Li Y.

Front Pharmacol. 2019 Jan 11;9:1448. doi: 10.3389/fphar.2018.01448. eCollection 2018.

PMID: 30687082

Prospective Validation of a Transcriptomic Metric in Severe Trauma.

Raymond SL, Hawkins RB, Wang Z, Mira JC, Stortz JA, Han F, Lanz JD, Hennessy LV, Brumback BA, Baker HV, Efron PA, Brakenridge SC, Xiao W, Tompkins RG, Cuschieri J, Moore FA, Maier RV, Moldawer LL.

Ann Surg. 2019 Jan 24. doi: 10.1097/SLA.0000000000003204. [Epub ahead of print]

PMID: 30688688

 

Evidence for Persistent Immune Suppression in Patients Who Develop Chronic Critical Illness After Sepsis.

Stortz JA, Murphy TJ, Raymond SL, Mira JC, Ungaro R, Dirain ML, Nacionales DC, Loftus TJ, Wang Z, Ozrazgat-Baslanti T, Ghita GL, Brumback BA, Mohr AM, Bihorac A, Efron PA, Moldawer LL, Moore FA, Brakenridge SC.

Shock. 2018 Mar;49(3):249-258. doi: 10.1097/SHK.0000000000000981.

PMID: 28885387

 

Kinetic Analysis of Hepatic Metabolism Using Hyperpolarized Dihydroxyacetone.

Kirpich A, Ragavan M, Bankson JA, McIntyre LM, Merritt ME.

J Chem Inf Model. 2019 Jan 28;59(1):605-614. doi: 10.1021/acs.jcim.8b00745. Epub 2019 Jan 15.

PMID: 30602117

Sublethal effects of a vapour-active pyrethroid, transfluthrin, on Aedes aegypti and Ae. albopictus (Diptera: Culicidae) fecundity and oviposition behaviour.

Bibbs CS, Hahn DA, Kaufman PE, Xue RD.

Parasit Vectors. 2018 Aug 29;11(1):486. doi: 10.1186/s13071-018-3065-4.

PMID: 30157907

Characterization of Non-hormone Expressing Endocrine Cells in Fetal and Infant Human Pancreas.

Moin ASM, Montemurro C, Zeng K, Cory M, Nguyen M, Kulkarni S, Fritsch H, Meier JJ, Dhawan S, Rizza RA, Atkinson MA, Butler AE.

Front Endocrinol (Lausanne). 2019 Jan 9;9:791. doi: 10.3389/fendo.2018.00791. eCollection 2018.

PMID: 30687234

Subthalamic nucleus pathology contributes to repetitive behavior expression and is reversed by environmental enrichment.

Lewis MH, Lindenmaier Z, Boswell K, Edington G, King MA, Muehlmann AM.

Genes Brain Behav. 2018 Nov;17(8):e12468. doi: 10.1111/gbb.12468. Epub 2018 Mar 15.

PMID: 29457676

 

Computational in Vitro Toxicology Uncovers Chemical Structures Impairing Mitochondrial Membrane Potential.

Dreier DA, Denslow ND, Martyniuk CJ.

J Chem Inf Model. 2019 Jan 30. doi: 10.1021/acs.jcim.8b00433. [Epub ahead of print]

PMID: 30645939

 

Matching tRNA modifications in humans to their known and predicted enzymes.

de Crécy-Lagard V, Boccaletto P, Mangleburg CG, Sharma P, Lowe TM, Leidel SA, Bujnicki JM.

Nucleic Acids Res. 2019 Jan 30. doi: 10.1093/nar/gkz011. [Epub ahead of print]

PMID: 30698754